jgi.p|Nanoce1779_2|632459, mRNA_7728 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|632459
Unique Name	mRNA_7728
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3312
Alignment location	scaffold_21:187465..190776 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	632545
Track	FilteredModels2
ProteinId	632459

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:187465..190776 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632459	gene_7728	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632459	mRNA_7728-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7728	CDS_7728	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:187465..190776+
coding sequence from alignment at scaffold_21:187465..190776+

mRNA sequence

>mRNA_7728 ID=mRNA_7728|Name=jgi.p|Nanoce1779_2|632459|organism=Nannochloropsis oceanica|type=mRNA|length=3312bp
GCTGCTCGACGCCATTTCTTTGTTCTAGAAAATATATCACTCATGTTTTT
CGCTCACTCTCGCCGCCGCCAAAATACGACCCGGAAGGGCCAAGCTAAGG
GCGGCAGCAGGCGTAACTCACCCCATGTAAGCCACATAGCTCATTCTCCC
TACGTACAGACACTAAATCATAGCATCTTGTCCATGCATCGCTCAGGAAG
TGCGAGGCAGGGCACCTAGGTGAGCATGCCTTCACGAGAATGCCACGACG
GACGAGGCGTCATCATCACCTGGCCTGACAAGCACTGAGAGAATACAACT
AAGACCCCACTCGCCATGTGGCTGCGGGGTGAGGATGCCCCCGCGTGGCG
ACAGTCTCCAACAGGCCTTCCTGCTATCTCAAGCGTCGTTCCAGTCCCTG
TGAGTGAGGGCGCGGAAAAGAGGGCGGAAGAAGAGGTCTTGCTGGCGCTT
CGTATGATGTGCCAATCCGGCTTACGGCACCCGCTTCACGGACATTCCTA
CTCGCGCTATACAGCGCTACGGCCACGCGTGTGCTCTTCGTGCGAGGCAC
CCGTGTTTGGACCCTTCTCCAAGGCCTGCCTTTGTTTGACATGCGGTATC
ATCGTGCACCGGCAGTGCGTCCAACGCATCACCCGAATGCCCTGCGGCAG
CTTCCGCGGCCTTCACGACCCCGAGGGCCTCAACAGCTGCTTTGCCATCC
CTGGGGGAAAAGTGGCTCTGAAAATAAGGAGTAATGCTAAGGCGAGTGTG
GCTGGACCAGAAGTGGTGGCAAGATCAGAAAGGAAGATAGACACGGACGC
ACTACTAGGAGGCCAAATAGCAGAGGCGGAGGAAGAAGAGGTCGCGCTGA
ACACCGGAGTGCGGGTTTTGGACAGCATCCCAGGAAATGGAAACTTGGAA
GAGATAGGCATCCCGGGAAATCCTGGTGCTGCTGATGCAGCATCGTCTCC
TTCAGTGAGCAGCAGTCCCAGCGACGACTATAGCGGTAGTCTTACTCTTA
CTACCGGCAGTGGCGCCCGCCGCATGACATACGACGCGCTCGCACGGATT
GGAGCTCTGGTGGGCAGTATGGTGGGTGTTGGTGGAGATGCTAGCGTTGG
GGATGGAAAAGAAGCCGCAGTGATAGCCAGCGGCAGCAGCAGTGTTACCA
GCAGAAGCATTTTTAGCTTGTCGGCGCTTCGCGGAGCGGGAGCTGTGGCT
GATGCTTACACAGGGTACCGACAGCAAGATAGTGACCGACGGCATGGCAG
TATCGGTGGCAGTCACGAGAGAGCGGCCCGAACGTCGCCAGTGGCTATGG
CTTGGTCTCGTCTAGCACAGCGAGCAAGCCGGCCCGAGGGAGGAGGAGGT
GGGGAGGGAGGGGCAGGTGCCTTGTTAGACCTGGCTACGTTTACTCGCAC
CCTAGAGGAGAAGAAAGTAAACAACGACGAATCCATAGGCCCCAGGAGAA
GGTCAGTCGAACCAAGGTGGGACGATTCAAGCGCCCCTTTCATTGGACAG
ATTTTGCGTTCTTCTCGGACGCCCCCAGGCTTTGTGTGGGCAGCCTGTTT
GGATAGTTTCGTGGCGCGGCATGCAGCTTCAGCGGGCGCTGGACGGGCTC
TATCACCAGACATCATAAAGACAAACGAAGAGGAAGAGGGGGAGGACAGG
AAGGAAACGAGAGTGGACGAGGAGGGAGGAGTCCCCGCTGGGTCGTGCTG
TGAAGACGCGGCGTCCATTATTCACGAGGTTGCGTTGGTGTTGATGGAAT
ATGTGCCAGGGCTGTTAGGCTCCTCGTTGGAAGCCTACGAAGAAGCATTT
GAGGCGGTAGAAACTGAAATTATGACGACGCTCTACCCATCTGTGCTTTG
GGAGTGCCAGAATCAGGTGCGGGCCTTGAGCCGCGCTGTCGAGGCTTGGT
ATCGCCAGCAGCCTGCGGAGCAGGAGGAAGAGGAAAAAGGGTTGGAGCGA
GGAGGGGTTGTTAGTGCAGACGCACATTACCACAAGGCGGCTCAGGAGCT
GATAAGAATGAGTAGGGAGGTGACGGGTCGGAAGAAGGTGCAACGTGTTT
TGGGGGCCTGTTTGGCGTTGGGGGAAGGGAATTTGGTAATGACAGCAGAT
GAGCTCTTGCCGGCCCTGGGCCGTGTCGTGCGATTGGCGCGGGTGCCTGC
ATTGCCTGCTCATTTGGCATTTATTGAAGAGACTTGCGATACGGGGACTT
TGTTGGGCGCGGAAGGCTACGCGTTGACGTCTTTGCAGGTTGTGATTAGC
CTTATCATAACGCCACCGGCTCATGACGACAAGGGGGCAGAGGAGGGGGG
GGAATTTTGAGGAGGTACAGGGATAGGAGACGAGTTGAAAGTCTCACGAC
AAAAAGTCGACGTGCATTGATGTCTCACCGTCTGAGAAATGATTGGGGGT
GATGTAGCTTGGGCATCCGCGTCTGCGTGTGTTGGAAGATGGTGGGTGGC
CGGGGGTGAGATGAAAGCCTGTAATAATGCATGTAAATAGCCTGATGTTG
ATTTAAAAACAAATCTGTTGGCGGGAGAGATATGAAAAGAGAAGTCAAGA
AGAAGACACTGCGATAAGAACATTTTGATCTTTGCTTGAGGAGTCAGCCA
CCCGCGCACTAGGGTGTCCTATTTTCTAATCAAAGCAATTGTTAGAAAGG
AGTTGCCCTCTTCGCTTTCCCTTAACCAACGCAATTCAATGAATATAACT
AAAGTGAACGACAAGTCAATTTAAACGAATCGTGTGATGGACAGGCTTTT
TCCGTGCAAAAAAGGAAACCGGTATTTGCTGGAAATGCACGCACGCAACC
ACCCACCCCTATGGACAACGCGGCAAGCAATCATAATGATCCTTCCAAAA
TGTCTTTTCTTGTTAAATTCTTCAAACGCCTAAGACAAGTCTACGGATGC
GTGCTGCAAAGCTCGGGGCGATAGTGGTGCTCACACGGAGTCTCGACATT
TGCACAGTGCTGCGATGCCCCGTGTTGTGGCTCTTGCCCGCATGCCCGCG
CATCACGTCGCCATTTCGTAGCAAGCGGAAGCGCTTTTTGGCCCCTTGGT
GGCGCTTGGCCCCGTGCTTCCAGCGCACGCACAGCGTCGTGGGACTCAGC
AGCGCTGGTGGCGACGGGAGGATGGAAGGACGGGGTGCAAGCGAAACTAC
TGCTACTATTCTTGTGCGTGCGTCGGACCATGCGCGATGCAGGAGCAACG
AAGTCATGGTACGTGTCCTGCCTGTATGTATGTGTTGGTGTGGGGATTGG
ACGTGTTTGAGATGTCACAGCCTGCTGGCCAAAGGACTTGATGACACAGG
TAGAGGGAGCAT

protein sequence of jgi.p|Nanoce1779_2|632459

>mRNA_7728-protein ID=mRNA_7728-protein|Name=jgi.p|Nanoce1779_2|632459|organism=Nannochloropsis oceanica|type=polypeptide|length=665bp
MWLRGEDAPAWRQSPTGLPAISSVVPVPVSEGAEKRAEEEVLLALRMMCQ
SGLRHPLHGHSYSRYTALRPRVCSSCEAPVFGPFSKACLCLTCGIIVHRQ
CVQRITRMPCGSFRGLHDPEGLNSCFAIPGGKVALKIRSNAKASVAGPEV
VARSERKIDTDALLGGQIAEAEEEEVALNTGVRVLDSIPGNGNLEEIGIP
GNPGAADAASSPSVSSSPSDDYSGSLTLTTGSGARRMTYDALARIGALVG
SMVGVGGDASVGDGKEAAVIASGSSSVTSRSIFSLSALRGAGAVADAYTG
YRQQDSDRRHGSIGGSHERAARTSPVAMAWSRLAQRASRPEGGGGGEGGA
GALLDLATFTRTLEEKKVNNDESIGPRRRSVEPRWDDSSAPFIGQILRSS
RTPPGFVWAACLDSFVARHAASAGAGRALSPDIIKTNEEEEGEDRKETRV
DEEGGVPAGSCCEDAASIIHEVALVLMEYVPGLLGSSLEAYEEAFEAVET
EIMTTLYPSVLWECQNQVRALSRAVEAWYRQQPAEQEEEEKGLERGGVVS
ADAHYHKAAQELIRMSREVTGRKKVQRVLGACLALGEGNLVMTADELLPA
LGRVVRLARVPALPAHLAFIEETCDTGTLLGAEGYALTSLQVVISLIITP
PAHDDKGAEEGGEF*

mRNA from alignment at scaffold_21:187465..190776+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7728 ID=mRNA_7728|Name=jgi.p|Nanoce1779_2|632459|organism=Nannochloropsis oceanica|type=mRNA|length=3312bp|location=Sequence derived from alignment at scaffold_21:187465..190776+ (Nannochloropsis oceanica)
GCTGCTCGACGCCATTTCTTTGTTCTAGAAAATATATCACTCATGTTTTT
CGCTCACTCTCGCCGCCGCCAAAATACGACCCGGAAGGGCCAAGCTAAGG
GCGGCAGCAGGCGTAACTCACCCCATGTAAGCCACATAGCTCATTCTCCC
TACGTACAGACACTAAATCATAGCATCTTGTCCATGCATCGCTCAGGAAG
TGCGAGGCAGGGCACCTAGGTGAGCATGCCTTCACGAGAATGCCACGACG
GACGAGGCGTCATCATCACCTGGCCTGACAAGCACTGAGAGAATACAACT
AAGACCCCACTCGCCATGTGGCTGCGGGGTGAGGATGCCCCCGCGTGGCG
ACAGTCTCCAACAGGCCTTCCTGCTATCTCAAGCGTCGTTCCAGTCCCTG
TGAGTGAGGGCGCGGAAAAGAGGGCGGAAGAAGAGGTCTTGCTGGCGCTT
CGTATGATGTGCCAATCCGGCTTACGGCACCCGCTTCACGGACATTCCTA
CTCGCGCTATACAGCGCTACGGCCACGCGTGTGCTCTTCGTGCGAGGCAC
CCGTGTTTGGACCCTTCTCCAAGGCCTGCCTTTGTTTGACATGCGGTATC
ATCGTGCACCGGCAGTGCGTCCAACGCATCACCCGAATGCCCTGCGGCAG
CTTCCGCGGCCTTCACGACCCCGAGGGCCTCAACAGCTGCTTTGCCATCC
CTGGGGGAAAAGTGGCTCTGAAAATAAGGAGTAATGCTAAGGCGAGTGTG
GCTGGACCAGAAGTGGTGGCAAGATCAGAAAGGAAGATAGACACGGACGC
ACTACTAGGAGGCCAAATAGCAGAGGCGGAGGAAGAAGAGGTCGCGCTGA
ACACCGGAGTGCGGGTTTTGGACAGCATCCCAGGAAATGGAAACTTGGAA
GAGATAGGCATCCCGGGAAATCCTGGTGCTGCTGATGCAGCATCGTCTCC
TTCAGTGAGCAGCAGTCCCAGCGACGACTATAGCGGTAGTCTTACTCTTA
CTACCGGCAGTGGCGCCCGCCGCATGACATACGACGCGCTCGCACGGATT
GGAGCTCTGGTGGGCAGTATGGTGGGTGTTGGTGGAGATGCTAGCGTTGG
GGATGGAAAAGAAGCCGCAGTGATAGCCAGCGGCAGCAGCAGTGTTACCA
GCAGAAGCATTTTTAGCTTGTCGGCGCTTCGCGGAGCGGGAGCTGTGGCT
GATGCTTACACAGGGTACCGACAGCAAGATAGTGACCGACGGCATGGCAG
TATCGGTGGCAGTCACGAGAGAGCGGCCCGAACGTCGCCAGTGGCTATGG
CTTGGTCTCGTCTAGCACAGCGAGCAAGCCGGCCCGAGGGAGGAGGAGGT
GGGGAGGGAGGGGCAGGTGCCTTGTTAGACCTGGCTACGTTTACTCGCAC
CCTAGAGGAGAAGAAAGTAAACAACGACGAATCCATAGGCCCCAGGAGAA
GGTCAGTCGAACCAAGGTGGGACGATTCAAGCGCCCCTTTCATTGGACAG
ATTTTGCGTTCTTCTCGGACGCCCCCAGGCTTTGTGTGGGCAGCCTGTTT
GGATAGTTTCGTGGCGCGGCATGCAGCTTCAGCGGGCGCTGGACGGGCTC
TATCACCAGACATCATAAAGACAAACGAAGAGGAAGAGGGGGAGGACAGG
AAGGAAACGAGAGTGGACGAGGAGGGAGGAGTCCCCGCTGGGTCGTGCTG
TGAAGACGCGGCGTCCATTATTCACGAGGTTGCGTTGGTGTTGATGGAAT
ATGTGCCAGGGCTGTTAGGCTCCTCGTTGGAAGCCTACGAAGAAGCATTT
GAGGCGGTAGAAACTGAAATTATGACGACGCTCTACCCATCTGTGCTTTG
GGAGTGCCAGAATCAGGTGCGGGCCTTGAGCCGCGCTGTCGAGGCTTGGT
ATCGCCAGCAGCCTGCGGAGCAGGAGGAAGAGGAAAAAGGGTTGGAGCGA
GGAGGGGTTGTTAGTGCAGACGCACATTACCACAAGGCGGCTCAGGAGCT
GATAAGAATGAGTAGGGAGGTGACGGGTCGGAAGAAGGTGCAACGTGTTT
TGGGGGCCTGTTTGGCGTTGGGGGAAGGGAATTTGGTAATGACAGCAGAT
GAGCTCTTGCCGGCCCTGGGCCGTGTCGTGCGATTGGCGCGGGTGCCTGC
ATTGCCTGCTCATTTGGCATTTATTGAAGAGACTTGCGATACGGGGACTT
TGTTGGGCGCGGAAGGCTACGCGTTGACGTCTTTGCAGGTTGTGATTAGC
CTTATCATAACGCCACCGGCTCATGACGACAAGGGGGCAGAGGAGGGGGG
GGAATTTTGAGGAGGTACAGGGATAGGAGACGAGTTGAAAGTCTCACGAC
AAAAAGTCGACGTGCATTGATGTCTCACCGTCTGAGAAATGATTGGGGGT
GATGTAGCTTGGGCATCCGCGTCTGCGTGTGTTGGAAGATGGTGGGTGGC
CGGGGGTGAGATGAAAGCCTGTAATAATGCATGTAAATAGCCTGATGTTG
ATTTAAAAACAAATCTGTTGGCGGGAGAGATATGAAAAGAGAAGTCAAGA
AGAAGACACTGCGATAAGAACATTTTGATCTTTGCTTGAGGAGTCAGCCA
CCCGCGCACTAGGGTGTCCTATTTTCTAATCAAAGCAATTGTTAGAAAGG
AGTTGCCCTCTTCGCTTTCCCTTAACCAACGCAATTCAATGAATATAACT
AAAGTGAACGACAAGTCAATTTAAACGAATCGTGTGATGGACAGGCTTTT
TCCGTGCAAAAAAGGAAACCGGTATTTGCTGGAAATGCACGCACGCAACC
ACCCACCCCTATGGACAACGCGGCAAGCAATCATAATGATCCTTCCAAAA
TGTCTTTTCTTGTTAAATTCTTCAAACGCCTAAGACAAGTCTACGGATGC
GTGCTGCAAAGCTCGGGGCGATAGTGGTGCTCACACGGAGTCTCGACATT
TGCACAGTGCTGCGATGCCCCGTGTTGTGGCTCTTGCCCGCATGCCCGCG
CATCACGTCGCCATTTCGTAGCAAGCGGAAGCGCTTTTTGGCCCCTTGGT
GGCGCTTGGCCCCGTGCTTCCAGCGCACGCACAGCGTCGTGGGACTCAGC
AGCGCTGGTGGCGACGGGAGGATGGAAGGACGGGGTGCAAGCGAAACTAC
TGCTACTATTCTTGTGCGTGCGTCGGACCATGCGCGATGCAGGAGCAACG
AAGTCATGGTACGTGTCCTGCCTGTATGTATGTGTTGGTGTGGGGATTGG
ACGTGTTTGAGATGTCACAGCCTGCTGGCCAAAGGACTTGATGACACAGG
TAGAGGGAGCAT

Coding sequence (CDS) from alignment at scaffold_21:187465..190776+

>mRNA_7728 ID=mRNA_7728|Name=jgi.p|Nanoce1779_2|632459|organism=Nannochloropsis oceanica|type=CDS|length=1995bp|location=Sequence derived from alignment at scaffold_21:187465..190776+ (Nannochloropsis oceanica)
ATGTGGCTGCGGGGTGAGGATGCCCCCGCGTGGCGACAGTCTCCAACAGG
CCTTCCTGCTATCTCAAGCGTCGTTCCAGTCCCTGTGAGTGAGGGCGCGG
AAAAGAGGGCGGAAGAAGAGGTCTTGCTGGCGCTTCGTATGATGTGCCAA
TCCGGCTTACGGCACCCGCTTCACGGACATTCCTACTCGCGCTATACAGC
GCTACGGCCACGCGTGTGCTCTTCGTGCGAGGCACCCGTGTTTGGACCCT
TCTCCAAGGCCTGCCTTTGTTTGACATGCGGTATCATCGTGCACCGGCAG
TGCGTCCAACGCATCACCCGAATGCCCTGCGGCAGCTTCCGCGGCCTTCA
CGACCCCGAGGGCCTCAACAGCTGCTTTGCCATCCCTGGGGGAAAAGTGG
CTCTGAAAATAAGGAGTAATGCTAAGGCGAGTGTGGCTGGACCAGAAGTG
GTGGCAAGATCAGAAAGGAAGATAGACACGGACGCACTACTAGGAGGCCA
AATAGCAGAGGCGGAGGAAGAAGAGGTCGCGCTGAACACCGGAGTGCGGG
TTTTGGACAGCATCCCAGGAAATGGAAACTTGGAAGAGATAGGCATCCCG
GGAAATCCTGGTGCTGCTGATGCAGCATCGTCTCCTTCAGTGAGCAGCAG
TCCCAGCGACGACTATAGCGGTAGTCTTACTCTTACTACCGGCAGTGGCG
CCCGCCGCATGACATACGACGCGCTCGCACGGATTGGAGCTCTGGTGGGC
AGTATGGTGGGTGTTGGTGGAGATGCTAGCGTTGGGGATGGAAAAGAAGC
CGCAGTGATAGCCAGCGGCAGCAGCAGTGTTACCAGCAGAAGCATTTTTA
GCTTGTCGGCGCTTCGCGGAGCGGGAGCTGTGGCTGATGCTTACACAGGG
TACCGACAGCAAGATAGTGACCGACGGCATGGCAGTATCGGTGGCAGTCA
CGAGAGAGCGGCCCGAACGTCGCCAGTGGCTATGGCTTGGTCTCGTCTAG
CACAGCGAGCAAGCCGGCCCGAGGGAGGAGGAGGTGGGGAGGGAGGGGCA
GGTGCCTTGTTAGACCTGGCTACGTTTACTCGCACCCTAGAGGAGAAGAA
AGTAAACAACGACGAATCCATAGGCCCCAGGAGAAGGTCAGTCGAACCAA
GGTGGGACGATTCAAGCGCCCCTTTCATTGGACAGATTTTGCGTTCTTCT
CGGACGCCCCCAGGCTTTGTGTGGGCAGCCTGTTTGGATAGTTTCGTGGC
GCGGCATGCAGCTTCAGCGGGCGCTGGACGGGCTCTATCACCAGACATCA
TAAAGACAAACGAAGAGGAAGAGGGGGAGGACAGGAAGGAAACGAGAGTG
GACGAGGAGGGAGGAGTCCCCGCTGGGTCGTGCTGTGAAGACGCGGCGTC
CATTATTCACGAGGTTGCGTTGGTGTTGATGGAATATGTGCCAGGGCTGT
TAGGCTCCTCGTTGGAAGCCTACGAAGAAGCATTTGAGGCGGTAGAAACT
GAAATTATGACGACGCTCTACCCATCTGTGCTTTGGGAGTGCCAGAATCA
GGTGCGGGCCTTGAGCCGCGCTGTCGAGGCTTGGTATCGCCAGCAGCCTG
CGGAGCAGGAGGAAGAGGAAAAAGGGTTGGAGCGAGGAGGGGTTGTTAGT
GCAGACGCACATTACCACAAGGCGGCTCAGGAGCTGATAAGAATGAGTAG
GGAGGTGACGGGTCGGAAGAAGGTGCAACGTGTTTTGGGGGCCTGTTTGG
CGTTGGGGGAAGGGAATTTGGTAATGACAGCAGATGAGCTCTTGCCGGCC
CTGGGCCGTGTCGTGCGATTGGCGCGGGTGCCTGCATTGCCTGCTCATTT
GGCATTTATTGAAGAGACTTGCGATACGGGGACTTTGTTGGGCGCGGAAG
GCTACGCGTTGACGTCTTTGCAGGTTGTGATTAGCCTTATCATAACGCCA
CCGGCTCATGACGACAAGGGGGCAGAGGAGGGGGGGGAATTTTGA

Synonyms

Publications