jgi.p|Nanoce1779_2|599815, mRNA_7727 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599815
Unique NamemRNA_7727
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length767
Alignment locationscaffold_21:186036..187450 +

Link to JBrowse

Properties
Property NameValue
TranscriptId599901
TrackFilteredModels2
ProteinId599815
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:186036..187450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599815gene_7727Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599815mRNA_7727-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7727CDS_7727Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7727 ID=mRNA_7727|Name=jgi.p|Nanoce1779_2|599815|organism=Nannochloropsis oceanica|type=mRNA|length=767bp
CAGGCTTCGGCACGGGACAGCAGGCCCCCACGCTCCACCACACCAAGCCA
CCATTCCCAAAACTTTGTTCTATCCGTGGCAGCCAAACTAGCCATTCCCG
CCCCGCTGCACTCCTCCGTTGCACAGACATCATGTTTTATCTGAAAACCT
TGGAAAAGGACTTCATGCTAGAGCCCAAAGACCTGGGCCCTAACCTCAAG
GAAACCATTAAGCGGCGGCTGACACAAATGATGGAGGGAACACTGGAACC
GGACCTGGGCTTCGTGATTGCCTTGGTAGGCTTAGAGGACCAGCATATTC
GGCCTGGAAAGATCGAGTACGAGACGGGGCAGGTTGAGGTATTGGTTAAA
TTTACGGTAATGCTGTTTCGGCCTTTCCGCAACGAGATTCTGGACGCCCA
AGTAACAACAGTAACGGAAATGGGCTTCTTTGCCGACGCTGGGCCTGTAC
AGGGTATTTATGTGAACAAGCACCAGATGCCCCAAGATTACGGGTTCGAT
GCTCAGGATAATGTATGGCGGACGTCGGATATGGAGGTGGAGATCAGACC
AGGGTGCGGGGTGCGGATGCGGGTGGTGGGCGTGGATATCACACCGGGAC
GGATGAACGTCGTCGGTTCGATCATGGACGATTTTACTGGCCTCATCAGT
GGAGACACTGACTAAATGACGCGAGATGGCGTCGACGACAGCGGGGAATG
GTTATGTACATTAAAGAAAAGGCGAAGGGAGGGTCAGCTCAAAGAATGAA
ATCCTTAGAAACTACAC
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protein sequence of jgi.p|Nanoce1779_2|599815

>mRNA_7727-protein ID=mRNA_7727-protein|Name=jgi.p|Nanoce1779_2|599815|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MFYLKTLEKDFMLEPKDLGPNLKETIKRRLTQMMEGTLEPDLGFVIALVG
LEDQHIRPGKIEYETGQVEVLVKFTVMLFRPFRNEILDAQVTTVTEMGFF
ADAGPVQGIYVNKHQMPQDYGFDAQDNVWRTSDMEVEIRPGCGVRMRVVG
VDITPGRMNVVGSIMDDFTGLISGDTD*
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mRNA from alignment at scaffold_21:186036..187450+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7727 ID=mRNA_7727|Name=jgi.p|Nanoce1779_2|599815|organism=Nannochloropsis oceanica|type=mRNA|length=1415bp|location=Sequence derived from alignment at scaffold_21:186036..187450+ (Nannochloropsis oceanica)
CAGGCTTCGGCACGGGACAGCAGGCCCCCACGCTCCACCACACCAAGCCA
CCATTCCCAAAACTTTGTTCTATCCGTGGCAGCCAAACTAGCCATTCCCG
CCCCGCTGCACTCCTCCGTTGCACAGACATCATGTTTTATCTGGTAACTA
TCTACATTGCTTCCCCTCCGTTGCACAGCCATCATGTTTTATCCGGTAAC
TATCTACGTTGCTTTGAAAAGGTCCCTTTAGAAATCACTTCATCAGCCCC
GCAACCTCGTTCCTCAACATACCCACAGAAAACCTTGGAAAAGGACTTCA
TGCTAGAGCCCAAAGACCTGGGCCCTAACCTCAAGGAAACCATTAAGTAT
GTACTGAATATCATCTACATTATCGATACATGAAATGGCGAAGGGAGACG
TCTGTGGGGTGGCTTGTTTGGAGTGTTCGTGAAAGTCCCGGGAAGTGTGG
GGTGACGTGAATGGGGTAGAGCTAGGCGCTATTTGTTTCTGCTTGGCGTG
GTGGAAATCTGAGCGACTGGGACTTGCAAAGCGCGTGTGGGAAGGAGAGT
CTTGGATGCATGTGCCGTCTTTTTGAAACGTCTTACATACAAATAACTCC
TGCCTTCCTTTCCCACTCCATTCCCTCAAGGCGGCGGCTGACACAAATGA
TGGAGGGAACACTGGAACCGGACCTGGGCTTCGTGATTGCCTTGGTAGGC
TTAGAGGACCAGCATATTCGGCCTGGAAAGATCGAGTACGAGACGGGGCA
GGTTGAGGTATTGGTTAAATTTACGGTAATGCTGTTTCGGCCTTTCCGCA
ACGAGATTCTGGACGCCCAAGTAACAACAGTAACGGAAATGGGCTTCTTT
GCCGACGCTGGGCCTGTACAGGGTATTTATGTGAACAAGCACCAGATGCC
CCAAGATTACGGGTTCGATGCTCAGGATAATGTATGGCGGACGTCGGATA
TGGAGGTGGAGATCAGACCAGGGTGCGGGGTGCGGATGCGGGTGGTGGGC
GTGGATATCACACCGGGACGGATGGTACGCACGGTTGAGGCAGGGGTTTG
GAGGGATAAAATGTGCATCAGATAAAGTTCTTTCGGAATCAGCGGATAGA
TCGGCGGGCAGGAATGGAGATGTGTCTGTCTGTAGGAAGAACGGGAGGCC
CCAAACTATTCCTTCTTTAACTCGGAAGCTGCCTTGCACTCCAACAAAAG
CTTCCTCTCACGCGCCATTCACATATTCCTCCCACACCTTACTCCTTCCC
TAGAACGTCGTCGGTTCGATCATGGACGATTTTACTGGCCTCATCAGTGG
AGACACTGACTAAATGACGCGAGATGGCGTCGACGACAGCGGGGAATGGT
TATGTACATTAAAGAAAAGGCGAAGGGAGGGTCAGCTCAAAGAATGAAAT
CCTTAGAAACTACAC
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Coding sequence (CDS) from alignment at scaffold_21:186036..187450+

>mRNA_7727 ID=mRNA_7727|Name=jgi.p|Nanoce1779_2|599815|organism=Nannochloropsis oceanica|type=CDS|length=2136bp|location=Sequence derived from alignment at scaffold_21:186036..187450+ (Nannochloropsis oceanica)
ATGTTTTATCTGAAAACCTTGGAAAAGGACTTCATGCTAGAGCCCAAAGA
CCTGGGCCCTAACCTCAAGGAAACCATTAAGCGGCGGCTGACACAAATGA
TGGAGGGAACACTGGAACCGGACCTGGGCTTCGTGATTGCCTTGGTAGGC
TTAGAGGACCAGCATATTCGGCCTGGAAAGATCGAGTACGAGACGGGGCA
GGTTGAGGTATTGGTTAAATTTACGGTAATGCTGTTTCGGCCTTTCCGCA
ACGAGATTCTGGACGCCCAAGTAACAACAGTAACGGAAATGGGCTTCTTT
GCCGACGCTGGGCCTGTACAGGGTATTTATGTGAACAAGCACCAGATGCC
CCAAGATTACGGGTTCGATGCTCAGGATAATGTATGGCGGACGTCGGATA
TGGAGGTGGAGATCAGACCAGGGTGCGGGGTGCGGATGCGGGTGGTGGGC
GTGGATATCACACCGGGACGGATGAACGTCGTCGGTTCGATCATGGACGA
TTTTACTGGCCTCATCAGTGGAGACACTGACTAAATGTTTTATCTGAAAA
CCTTGGAAAAGGACTTCATGCTAGAGCCCAAAGACCTGGGCCCTAACCTC
AAGGAAACCATTAAGCGGCGGCTGACACAAATGATGGAGGGAACACTGGA
ACCGGACCTGGGCTTCGTGATTGCCTTGGTAGGCTTAGAGGACCAGCATA
TTCGGCCTGGAAAGATCGAGTACGAGACGGGGCAGGTTGAGGTATTGGTT
AAATTTACGGTAATGCTGTTTCGGCCTTTCCGCAACGAGATTCTGGACGC
CCAAGTAACAACAGTAACGGAAATGGGCTTCTTTGCCGACGCTGGGCCTG
TACAGGGTATTTATGTGAACAAGCACCAGATGCCCCAAGATTACGGGTTC
GATGCTCAGGATAATGTATGGCGGACGTCGGATATGGAGGTGGAGATCAG
ACCAGGGTGCGGGGTGCGGATGCGGGTGGTGGGCGTGGATATCACACCGG
GACGGATGAACGTCGTCGGTTCGATCATGGACGATTTTACTGGCCTCATC
AGTGGAGACACTGACTAAATGTTTTATCTGAAAACCTTGGAAAAGGACTT
CATGCTAGAGCCCAAAGACCTGGGCCCTAACCTCAAGGAAACCATTAAGC
GGCGGCTGACACAAATGATGGAGGGAACACTGGAACCGGACCTGGGCTTC
GTGATTGCCTTGGTAGGCTTAGAGGACCAGCATATTCGGCCTGGAAAGAT
CGAGTACGAGACGGGGCAGGTTGAGGTATTGGTTAAATTTACGGTAATGC
TGTTTCGGCCTTTCCGCAACGAGATTCTGGACGCCCAAGTAACAACAGTA
ACGGAAATGGGCTTCTTTGCCGACGCTGGGCCTGTACAGGGTATTTATGT
GAACAAGCACCAGATGCCCCAAGATTACGGGTTCGATGCTCAGGATAATG
TATGGCGGACGTCGGATATGGAGGTGGAGATCAGACCAGGGTGCGGGGTG
CGGATGCGGGTGGTGGGCGTGGATATCACACCGGGACGGATGAACGTCGT
CGGTTCGATCATGGACGATTTTACTGGCCTCATCAGTGGAGACACTGACT
AAATGTTTTATCTGAAAACCTTGGAAAAGGACTTCATGCTAGAGCCCAAA
GACCTGGGCCCTAACCTCAAGGAAACCATTAAGCGGCGGCTGACACAAAT
GATGGAGGGAACACTGGAACCGGACCTGGGCTTCGTGATTGCCTTGGTAG
GCTTAGAGGACCAGCATATTCGGCCTGGAAAGATCGAGTACGAGACGGGG
CAGGTTGAGGTATTGGTTAAATTTACGGTAATGCTGTTTCGGCCTTTCCG
CAACGAGATTCTGGACGCCCAAGTAACAACAGTAACGGAAATGGGCTTCT
TTGCCGACGCTGGGCCTGTACAGGGTATTTATGTGAACAAGCACCAGATG
CCCCAAGATTACGGGTTCGATGCTCAGGATAATGTATGGCGGACGTCGGA
TATGGAGGTGGAGATCAGACCAGGGTGCGGGGTGCGGATGCGGGTGGTGG
GCGTGGATATCACACCGGGACGGATGAACGTCGTCGGTTCGATCATGGAC
GATTTTACTGGCCTCATCAGTGGAGACACTGACTAA
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Synonyms
Publications