jgi.p|Nanoce1779_2|599802, mRNA_7724 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599802
Unique NamemRNA_7724
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1171
Alignment locationscaffold_21:180155..181325 +

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Properties
Property NameValue
TranscriptId599888
TrackFilteredModels2
ProteinId599802
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:180155..181325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599802gene_7724Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599802mRNA_7724-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7724CDS_7724Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7724 ID=mRNA_7724|Name=jgi.p|Nanoce1779_2|599802|organism=Nannochloropsis oceanica|type=mRNA|length=1171bp
ACAGGCCTTGTTGGAGGCGGACGAAGATGCTGAAGACGTGGATGCCGTGG
GCAGGGAGACGAGCAGCGGGATGGCTCCTGCCGCGGCAGCAAGTGAGGAC
TCCACCGTCCCTATCACAATTACATTTCTTTGGGGCACATCTTCAAAGTC
GTCCTCTCCATGTCCTGTACCGAGACAATCACATCATTGTGACAAACAAG
GTAGCCGGAATACTTTCCCAGCAGGACAGGCAGACTGATGGTGTGGCGAC
GGACCAGCTTAGCATTGTGCGGGCACACATCAAGGACACGACAGGAAAGC
CAGGTAACGCGTATGTGGGCTTGGTGCACCGCCTGGATAGGAATGTCACG
GGATGTATGGTCATCGCATTGCGGAGCAAGGCGGCGGCTCGCCTGTCCTA
CGACTTTAAGAATCGGCTTGTTACCAAAATATATGTTTGCATGGTCGCGG
GCAAGTTGCACGGGGCGGGCATGCTCGCGGACATCCTCGTACATGGCCAA
GAGAATGTGACAAAGGTGGCGGGGGCCGGAGCAAAAAAGAAGAGACAGAG
GGAAAGAGAAGAAGGAGAGAAAGATGCAGAAAAGGCGCTCTTGCATTACA
AATCCCTGGGGAGCTTCCAAGATCCGGGAGGGGAAGCACAAACATTGGTG
CAGATACGCCTCGTCACAGGCAAGAAACATCAGATCCGAACCCAACTTTC
CCACCTGGGACATCCCATTGTCGGAGATATAAAGTACAATTCTCCCACGA
GATTTCGGGATAAATTCATAGCATTGCATTGCTGTACCCTTTCTTTCCGC
CATCCTTCGCTGAGACATCCGGCCTATCTTGTTGGAAATGATAACAAGAT
TTACAAGGATAGAACTCTCGGGGAGCCGACAAAACAGAAGTCACAACGCC
GAAAGATGACTGTGCATGCTCCATTGCCCGAGATGTGGCGGGCCCGGTTT
GGGGACGAGGTAGCTCGGAAAGTGGAAGAGCTGCAAAGAAGCACAGGCGA
GCCGCAGCCACTTCATTCACGACAGTTGCTACTCGGCGAACGGAGCTTTT
CCCGCCTGTTCGAGGCCGCTGCACCCAATTTTACCCACCCAACATCATCG
TCTCCTGCTCAAGTCGACAAGGCCAATGTAAAGAAATAAAACAATCATGA
AAGCAATACACACACACACAC
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protein sequence of jgi.p|Nanoce1779_2|599802

>mRNA_7724-protein ID=mRNA_7724-protein|Name=jgi.p|Nanoce1779_2|599802|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MLKTWMPWAGRRAAGWLLPRQQVRTPPSLSQLHFFGAHLQSRPLHVLYRD
NHIIVTNKVAGILSQQDRQTDGVATDQLSIVRAHIKDTTGKPGNAYVGLV
HRLDRNVTGCMVIALRSKAAARLSYDFKNRLVTKIYVCMVAGKLHGAGML
ADILVHGQENVTKVAGAGAKKKRQREREEGEKDAEKALLHYKSLGSFQDP
GGEAQTLVQIRLVTGKKHQIRTQLSHLGHPIVGDIKYNSPTRFRDKFIAL
HCCTLSFRHPSLRHPAYLVGNDNKIYKDRTLGEPTKQKSQRRKMTVHAPL
PEMWRARFGDEVARKVEELQRSTGEPQPLHSRQLLLGERSFSRLFEAAAP
NFTHPTSSSPAQVDKANVKK*
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mRNA from alignment at scaffold_21:180155..181325+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7724 ID=mRNA_7724|Name=jgi.p|Nanoce1779_2|599802|organism=Nannochloropsis oceanica|type=mRNA|length=1171bp|location=Sequence derived from alignment at scaffold_21:180155..181325+ (Nannochloropsis oceanica)
ACAGGCCTTGTTGGAGGCGGACGAAGATGCTGAAGACGTGGATGCCGTGG
GCAGGGAGACGAGCAGCGGGATGGCTCCTGCCGCGGCAGCAAGTGAGGAC
TCCACCGTCCCTATCACAATTACATTTCTTTGGGGCACATCTTCAAAGTC
GTCCTCTCCATGTCCTGTACCGAGACAATCACATCATTGTGACAAACAAG
GTAGCCGGAATACTTTCCCAGCAGGACAGGCAGACTGATGGTGTGGCGAC
GGACCAGCTTAGCATTGTGCGGGCACACATCAAGGACACGACAGGAAAGC
CAGGTAACGCGTATGTGGGCTTGGTGCACCGCCTGGATAGGAATGTCACG
GGATGTATGGTCATCGCATTGCGGAGCAAGGCGGCGGCTCGCCTGTCCTA
CGACTTTAAGAATCGGCTTGTTACCAAAATATATGTTTGCATGGTCGCGG
GCAAGTTGCACGGGGCGGGCATGCTCGCGGACATCCTCGTACATGGCCAA
GAGAATGTGACAAAGGTGGCGGGGGCCGGAGCAAAAAAGAAGAGACAGAG
GGAAAGAGAAGAAGGAGAGAAAGATGCAGAAAAGGCGCTCTTGCATTACA
AATCCCTGGGGAGCTTCCAAGATCCGGGAGGGGAAGCACAAACATTGGTG
CAGATACGCCTCGTCACAGGCAAGAAACATCAGATCCGAACCCAACTTTC
CCACCTGGGACATCCCATTGTCGGAGATATAAAGTACAATTCTCCCACGA
GATTTCGGGATAAATTCATAGCATTGCATTGCTGTACCCTTTCTTTCCGC
CATCCTTCGCTGAGACATCCGGCCTATCTTGTTGGAAATGATAACAAGAT
TTACAAGGATAGAACTCTCGGGGAGCCGACAAAACAGAAGTCACAACGCC
GAAAGATGACTGTGCATGCTCCATTGCCCGAGATGTGGCGGGCCCGGTTT
GGGGACGAGGTAGCTCGGAAAGTGGAAGAGCTGCAAAGAAGCACAGGCGA
GCCGCAGCCACTTCATTCACGACAGTTGCTACTCGGCGAACGGAGCTTTT
CCCGCCTGTTCGAGGCCGCTGCACCCAATTTTACCCACCCAACATCATCG
TCTCCTGCTCAAGTCGACAAGGCCAATGTAAAGAAATAAAACAATCATGA
AAGCAATACACACACACACAC
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Coding sequence (CDS) from alignment at scaffold_21:180155..181325+

>mRNA_7724 ID=mRNA_7724|Name=jgi.p|Nanoce1779_2|599802|organism=Nannochloropsis oceanica|type=CDS|length=1113bp|location=Sequence derived from alignment at scaffold_21:180155..181325+ (Nannochloropsis oceanica)
ATGCTGAAGACGTGGATGCCGTGGGCAGGGAGACGAGCAGCGGGATGGCT
CCTGCCGCGGCAGCAAGTGAGGACTCCACCGTCCCTATCACAATTACATT
TCTTTGGGGCACATCTTCAAAGTCGTCCTCTCCATGTCCTGTACCGAGAC
AATCACATCATTGTGACAAACAAGGTAGCCGGAATACTTTCCCAGCAGGA
CAGGCAGACTGATGGTGTGGCGACGGACCAGCTTAGCATTGTGCGGGCAC
ACATCAAGGACACGACAGGAAAGCCAGGTAACGCGTATGTGGGCTTGGTG
CACCGCCTGGATAGGAATGTCACGGGATGTATGGTCATCGCATTGCGGAG
CAAGGCGGCGGCTCGCCTGTCCTACGACTTTAAGAATCGGCTTGTTACCA
AAATATATGTTTGCATGGTCGCGGGCAAGTTGCACGGGGCGGGCATGCTC
GCGGACATCCTCGTACATGGCCAAGAGAATGTGACAAAGGTGGCGGGGGC
CGGAGCAAAAAAGAAGAGACAGAGGGAAAGAGAAGAAGGAGAGAAAGATG
CAGAAAAGGCGCTCTTGCATTACAAATCCCTGGGGAGCTTCCAAGATCCG
GGAGGGGAAGCACAAACATTGGTGCAGATACGCCTCGTCACAGGCAAGAA
ACATCAGATCCGAACCCAACTTTCCCACCTGGGACATCCCATTGTCGGAG
ATATAAAGTACAATTCTCCCACGAGATTTCGGGATAAATTCATAGCATTG
CATTGCTGTACCCTTTCTTTCCGCCATCCTTCGCTGAGACATCCGGCCTA
TCTTGTTGGAAATGATAACAAGATTTACAAGGATAGAACTCTCGGGGAGC
CGACAAAACAGAAGTCACAACGCCGAAAGATGACTGTGCATGCTCCATTG
CCCGAGATGTGGCGGGCCCGGTTTGGGGACGAGGTAGCTCGGAAAGTGGA
AGAGCTGCAAAGAAGCACAGGCGAGCCGCAGCCACTTCATTCACGACAGT
TGCTACTCGGCGAACGGAGCTTTTCCCGCCTGTTCGAGGCCGCTGCACCC
AATTTTACCCACCCAACATCATCGTCTCCTGCTCAAGTCGACAAGGCCAA
TGTAAAGAAATAA
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Synonyms
Publications