jgi.p|Nanoce1779_2|599789, mRNA_7722 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599789
Unique Name	mRNA_7722
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1838
Alignment location	scaffold_21:171361..174193 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599875
Track	FilteredModels2
ProteinId	599789

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:171361..174193 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599789	gene_7722	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599789	mRNA_7722-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7722	CDS_7722	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:171361..174193+
coding sequence from alignment at scaffold_21:171361..174193+

mRNA sequence

>mRNA_7722 ID=mRNA_7722|Name=jgi.p|Nanoce1779_2|599789|organism=Nannochloropsis oceanica|type=mRNA|length=1838bp
ACAGACACTCTCTTCTCCGAGTGCGCAAACAACAAATCATGGGTGGACAG
CATCAAGCCGAGCGCCCCTCTGATGCCTCCGACGACCAGCACGATATGGA
CGTGGACGACACGATGATCGGCATTGGGGAGATCCAGAAACTAGGGGTCA
ATGCCGCCGACATCGCTAAGCTCGTGGAGGCTGGCATAAGCACTTGTGGC
ATGGTCACGAAGGTCCCTCTCAAAACCTTGCTTTCGATCAAGGGCTTCTC
GGAGGCCAAGGTCGAGAAGATCCGCTCCAGCGCACGCAAGCTCACGGGTG
GCAATACCAGCACCTTTAAGACGGGCACGGAGGTCCGCGAGCAGCGCAAA
CGGTGCATCAAGATCACCACTGGGGCCAAGGCATTTGATGCCATCCTGGG
CGGGGGGGTAGAGACGGGCTCTATTACCGAGGCCTATGGGGAGTTCCGCA
CGGGCAAGACTCAGCTCTCGCACACCCTGGCCGTGACGTGCCAGCTTGGG
TTCGAGCAGGGAGGGGGCCAGGGGAAGTGCATCTACTTGGACACGGAAGG
TAATTTCCGCCCGGAGCGGATCGAGAAGATTGCAGAGCGGTTCGGACTAG
ACCCAGAGGCGACCTTGGACAACATCATCGTGGCTCGGGCGTATGCCTCT
GGTAGGTGATTGGTCGGCTTGCGAGTGCGGAGGGAGCGCAAGGAGAGAGG
GCGGGAGGTAGGGATTGAGTTGTACTTCCAACGCCTCGCTGGTATTGCTT
CACGATCCTTTTTTTCCTCCTCCCTCCGACAACACGACAAAGCCATCCTA
CCTGCTCTCTCTTGCTTCCTTATGCTCTCTTCCCCTCGTTCCTTCCTGCC
TTCCCCTCCTTCCTTTTCCCAGACCAGCAATGCGAGCTCATAAAGCCCCT
GGCAGCCCTGATTGCGGAGCACGGACCTTTCCGTCTGCTCATCATTGATT
CCATCATTGCACTCTTCCGTGTGGACTACTCCGGTCGCGGAGAGCTGTCC
GAGCGTCAACAGAAGCTGGGCCAGCACCTGTCCGCGCTGACCCGTCTCTG
TGAAGATGCTAACCTGGCCATTCTGCTCGTGAACCAGTGCACTGCGGATC
CGGGTGCCATGTCGCTTTTCGCCCCCGTCGTCAAACCTGTCGGCGGTAAC
GTCCTCGCTCACGCCTCCTGTACGCGCTTGCACCTCAAAAAAGGCCGAGA
CAACGCCCGCGTGGCCAAGCTAGTCGACTCCCCTTCCATGCCAGAGGCGG
AGGCACAGTTTTGCATCACCGATGGTGGATTGGCTGACGTTTAAGATAAC
GTAGCTCATGCGGTTATGTCGAAGGTGTGAAAAGAAGGTCAACAATATAT
ATATATATATTATATATATATACACTCACATATATATATATATAGTGTGT
GTGTGTGTGTATGTGTGTGTGTGTGTGTGTATGTATTTGTGTGTGTGTGT
GTTTTTAGTAGAGAGAGCGAGAATATAAAAAAAATATCGAAGATATTCGC
CGGGTATAGATTGGACTAAATGACTCTTTATGGTGGGGAAGTAGACTAGG
AGACACAATAGAAGCTGTATCAGGCTGTCAAGCAATGCGCCCGTATGCAT
GTAGAGGGGCAAAGTACTTGGCTGACGTTACTTGCCCAACCTTGTTTGTC
TCCTTCCCCACCTTGTCAATTGAATGAATGTTTGATATGTGCATGCATTG
ATTATGTGTGGAAGAGGAAGTGGTAAGAAAAAGAGCGTTCATGCGACTTA
CCGACTGAGAGAGGAAAGAAAAAGATGAGACAACAGTTCCAGTGCGCAGT
GTGAAAAACGAAAGGCACCAGGAAGCGAAATACAGGCG

protein sequence of jgi.p|Nanoce1779_2|599789

>mRNA_7722-protein ID=mRNA_7722-protein|Name=jgi.p|Nanoce1779_2|599789|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MGGQHQAERPSDASDDQHDMDVDDTMIGIGEIQKLGVNAADIAKLVEAGI
STCGMVTKVPLKTLLSIKGFSEAKVEKIRSSARKLTGGNTSTFKTGTEVR
EQRKRCIKITTGAKAFDAILGGGVETGSITEAYGEFRTGKTQLSHTLAVT
CQLGFEQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDPEATLDNIIVAR
AYASGR*

mRNA from alignment at scaffold_21:171361..174193+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7722 ID=mRNA_7722|Name=jgi.p|Nanoce1779_2|599789|organism=Nannochloropsis oceanica|type=mRNA|length=2833bp|location=Sequence derived from alignment at scaffold_21:171361..174193+ (Nannochloropsis oceanica)
ACAGACACTCTCTTCTCCGAGTGCGCAAACAACAAATCATGGGTGGACAG
CATCAAGCCGAGCGCCCCTCTGATGCCTCCGACGACCAGCACGATATGGA
CGTGGACGACACGATGATCGGCATTGGGGAGATCCAGAAACTAGGGGTCA
ATGCCGCCGGTATGTATTCATTTTCTTTCCTTCTTTACCCCTTTCCTTTT
CCCTCCCTCCCTTTTCCCTCCTTCCCATCCCATCACCTACACGCCCCCAT
CCGTCTGCATCACCACAACCCCGCCACATCATGCATCCGGTATTTAGACC
CCTTTCTCTTATTGCTTTTCACTCCCCCTCCCCCTCCCCTTGTCGCTGTG
CATCACCATGACCCATCGGTGAGTGCCCCTCCCTCCTTTTATGTGTACCC
TCCACCTCCCCCCTCTTTCCCGCCCTATAGCATTCCAATGCCACCTGTGA
TGCGTCATCACATTGCAGTTAGGCATAGGCGGTACCAAAGCAGCTGTTTT
ATGGCGCCTTTTCCCTCCCCTATCTCCTCATCCAACCTTCCAATCCCATC
CCGTCACATAACCCCCCCGTCCTGTCCTACCTGCCTGCACAACTACCCTA
CACTCTCCACGCGCGCATACACCCCTTTTCACTTCCCTCCCCCTCCTTCC
TCTCTACCTCAAAGACATCGCTAAGCTCGTGGAGGCTGGCATAAGCACTT
GTGGCATGGTCACGAAGGTCCCTCTCAAAACCTTGCTTTCGATCAAGGGC
TTCTCGGAGGCCAAGGTCGAGAAGATCCGCTCCAGCGCACGCAAGCTCAC
GGGTGGCAATACCAGCACCTTTAAGACGGGCACGGAGGTCCGCGAGCAGC
GCAAACGGTGCATCAAGATCACCACTGGGGCCAAGGTAGGTTAGGCGGAT
GAAAATGTTTACTCTACCTCCCTCCATCTCTCCCTTCCTCCCTCTCCTCA
CTATGTAACAGGCATTTGATGCCATCCTGGGCGGGGGGGTAGAGACGGGC
TCTATTACCGAGGCCTATGGGGAGTTCCGCACGGGCAAGACTCAGCTCTC
GCACACCCTGGCCGTGACGTGCCAGCTTGGGTTCGAGCAGGGAGGGGGCC
AGGGGAAGTGCATCTACTTGGACACGGAAGGTAATTTCCGCCCGGAGCGG
ATCGAGAAGATTGCAGAGCGGTTCGGACTAGACCCAGAGGCGACCTTGGA
CAACATCATCGTGGCTCGGGCGTATGCCTCTGGTAGGTGATTGGTCGGCT
TGCGAGTGCGGAGGGAGCGCAAGGAGAGAGGGCGGGAGGTAGGGATTGAG
TTGTACTTCCAACGCCTCGCTGGTATTGCTTCACGATCCTTTTTTTCCTC
CTCCCTCCGACAACACGACAAAGCCATCCTACCTGCTCTCTCTTGCTTCC
TTATGCTCTCTTCCCCTCGTTCCTTCCTGCCTTCCCCTCCTTCCTTTTCC
CAGACCAGCAATGCGAGCTCATAAAGCCCCTGGCAGCCCTGATTGCGGAG
CACGGACCTTTCCGTCTGCTCATCATTGATTCCATCATTGCACTCTTCCG
TGTGGACTACTCCGGTCGCGGAGGTACGTCTTTGATTTTTCTCGTGTCTT
TCCATCTCTCTGTCTTTGTCTCTCTGTCGTAGACTCTCTCTCTCTTCTCC
CCCCCCGCCCCCCCCCTCCCCCCCCTTTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTTACACTCTTTCTCTCTCTTTCTCTCCTCTTTCTCTCCT
CTTTCTCTCTCTTCTCTCTCTCTCTTCTCTCTCTTCTCTCACTCTTTCTC
TCTTCTCTCTCTCTCTCTTCTCTCTTCTCTCTCTTCTCTCTTCTCTCTCT
ACCTCTTTCTCTCACTTCTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTTTCTCTTTCTTTCTCTCTCTATCTCTCTCTCACTCCCACTCCTCAAC
TTTCCTCCCCTACATTCCCTCCGGTCTCCCCCTCCAGAGCTGTCCGAGCG
TCAACAGAAGCTGGGCCAGCACCTGTCCGCGCTGACCCGTCTCTGTGAAG
ATGCTAACCTGGCCATTCTGCTCGTGAACCAGTGCACTGCGGATCCGGGT
GCCATGTCGCTTTTCGCCCCCGTCGTCAAACCTGTCGGCGGTAACGTCCT
CGCTCACGCCTCCTGTACGCGCTTGCACCTCAAAAAAGGCCGAGACAACG
CCCGCGTGGCCAAGCTAGTCGACTCCCCTTCCATGCCAGAGGCGGAGGCA
CAGTTTTGCATCACCGATGGTGGATTGGCTGACGTTTAAGATAACGTAGC
TCATGCGGTTATGTCGAAGGTGTGAAAAGAAGGTCAACAATATATATATA
TATATTATATATATATACACTCACATATATATATATATAGTGTGTGTGTG
TGTGTATGTGTGTGTGTGTGTGTGTATGTATTTGTGTGTGTGTGTGTTTT
TAGTAGAGAGAGCGAGAATATAAAAAAAATATCGAAGATATTCGCCGGGT
ATAGATTGGACTAAATGACTCTTTATGGTGGGGAAGTAGACTAGGAGACA
CAATAGAAGCTGTATCAGGCTGTCAAGCAATGCGCCCGTATGCATGTAGA
GGGGCAAAGTACTTGGCTGACGTTACTTGCCCAACCTTGTTTGTCTCCTT
CCCCACCTTGTCAATTGAATGAATGTTTGATATGTGCATGCATTGATTAT
GTGTGGAAGAGGAAGTGGTAAGAAAAAGAGCGTTCATGCGACTTACCGAC
TGAGAGAGGAAAGAAAAAGATGAGACAACAGTTCCAGTGCGCAGTGTGAA
AAACGAAAGGCACCAGGAAGCGAAATACAGGCG

Coding sequence (CDS) from alignment at scaffold_21:171361..174193+

>mRNA_7722 ID=mRNA_7722|Name=jgi.p|Nanoce1779_2|599789|organism=Nannochloropsis oceanica|type=CDS|length=1863bp|location=Sequence derived from alignment at scaffold_21:171361..174193+ (Nannochloropsis oceanica)
ATGGGTGGACAGCATCAAGCCGAGCGCCCCTCTGATGCCTCCGACGACCA
GCACGATATGGACGTGGACGACACGATGATCGGCATTGGGGAGATCCAGA
AACTAGGGGTCAATGCCGCCGACATCGCTAAGCTCGTGGAGGCTGGCATA
AGCACTTGTGGCATGGTCACGAAGGTCCCTCTCAAAACCTTGCTTTCGAT
CAAGGGCTTCTCGGAGGCCAAGGTCGAGAAGATCCGCTCCAGCGCACGCA
AGCTCACGGGTGGCAATACCAGCACCTTTAAGACGGGCACGGAGGTCCGC
GAGCAGCGCAAACGGTGCATCAAGATCACCACTGGGGCCAAGGCATTTGA
TGCCATCCTGGGCGGGGGGGTAGAGACGGGCTCTATTACCGAGGCCTATG
GGGAGTTCCGCACGGGCAAGACTCAGCTCTCGCACACCCTGGCCGTGACG
TGCCAGCTTGGGTTCGAGCAGGGAGGGGGCCAGGGGAAGTGCATCTACTT
GGACACGGAAGGTAATTTCCGCCCGGAGCGGATCGAGAAGATTGCAGAGC
GGTTCGGACTAGACCCAGAGGCGACCTTGGACAACATCATCGTGGCTCGG
GCGTATGCCTCTGGTAGGTGAATGGGTGGACAGCATCAAGCCGAGCGCCC
CTCTGATGCCTCCGACGACCAGCACGATATGGACGTGGACGACACGATGA
TCGGCATTGGGGAGATCCAGAAACTAGGGGTCAATGCCGCCGACATCGCT
AAGCTCGTGGAGGCTGGCATAAGCACTTGTGGCATGGTCACGAAGGTCCC
TCTCAAAACCTTGCTTTCGATCAAGGGCTTCTCGGAGGCCAAGGTCGAGA
AGATCCGCTCCAGCGCACGCAAGCTCACGGGTGGCAATACCAGCACCTTT
AAGACGGGCACGGAGGTCCGCGAGCAGCGCAAACGGTGCATCAAGATCAC
CACTGGGGCCAAGGCATTTGATGCCATCCTGGGCGGGGGGGTAGAGACGG
GCTCTATTACCGAGGCCTATGGGGAGTTCCGCACGGGCAAGACTCAGCTC
TCGCACACCCTGGCCGTGACGTGCCAGCTTGGGTTCGAGCAGGGAGGGGG
CCAGGGGAAGTGCATCTACTTGGACACGGAAGGTAATTTCCGCCCGGAGC
GGATCGAGAAGATTGCAGAGCGGTTCGGACTAGACCCAGAGGCGACCTTG
GACAACATCATCGTGGCTCGGGCGTATGCCTCTGGTAGGTGAATGGGTGG
ACAGCATCAAGCCGAGCGCCCCTCTGATGCCTCCGACGACCAGCACGATA
TGGACGTGGACGACACGATGATCGGCATTGGGGAGATCCAGAAACTAGGG
GTCAATGCCGCCGACATCGCTAAGCTCGTGGAGGCTGGCATAAGCACTTG
TGGCATGGTCACGAAGGTCCCTCTCAAAACCTTGCTTTCGATCAAGGGCT
TCTCGGAGGCCAAGGTCGAGAAGATCCGCTCCAGCGCACGCAAGCTCACG
GGTGGCAATACCAGCACCTTTAAGACGGGCACGGAGGTCCGCGAGCAGCG
CAAACGGTGCATCAAGATCACCACTGGGGCCAAGGCATTTGATGCCATCC
TGGGCGGGGGGGTAGAGACGGGCTCTATTACCGAGGCCTATGGGGAGTTC
CGCACGGGCAAGACTCAGCTCTCGCACACCCTGGCCGTGACGTGCCAGCT
TGGGTTCGAGCAGGGAGGGGGCCAGGGGAAGTGCATCTACTTGGACACGG
AAGGTAATTTCCGCCCGGAGCGGATCGAGAAGATTGCAGAGCGGTTCGGA
CTAGACCCAGAGGCGACCTTGGACAACATCATCGTGGCTCGGGCGTATGC
CTCTGGTAGGTGA

Synonyms

Publications