jgi.p|Nanoce1779_2|672956, mRNA_7721 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672956
Unique NamemRNA_7721
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length916
Alignment locationscaffold_21:169413..170567 +

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Properties
Property NameValue
TranscriptId673042
TrackFilteredModels2
ProteinId672956
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:169413..170567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672956gene_7721Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672956mRNA_7721-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7721CDS_7721Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7721 ID=mRNA_7721|Name=jgi.p|Nanoce1779_2|672956|organism=Nannochloropsis oceanica|type=mRNA|length=916bp
CGGCAGGTGAATACAAATGTTGGTGCGTCGCACGGGAGGGGTGGAGAGGT
TGAGATGGCCAGCAGAGACAGACCCTCGCGTCCATTCATTCACTCATTGC
TTGCTTGGCATCTACTACCTTGACATGTAGGCAAATGTGTTGAGTCCATG
GCCCAGCTTATCAAGACGGCCAAGGTGGGTGGTTTGGACTGGAGGATCGG
GTGGAGGGGTCGATAGTGTTGGAAGCTGAGAAAAATATGTCTCAGGCATA
TACTTCCCTCCCTTTTTCAACCCATGAATCCATGATTTTCTCCACCCCAT
GAATACGCATATGATCAGATGAGTTCGGTACGCGAGAATGCATATTTGGA
AGCCAATCGGGTGTCTGTCTTGACGGCCACCATCGTAAGTGGTTGGGTGT
GTGGGGTGTGTTGGGCCTGTTGTTCCTGTTGGCCTGGTTATGACTTTAGT
CTACCGCTTGACAAGCCATCGAATTTGTTTATTCACTCTTATCCGATTCA
AAAAAAGAAGAAGCATTCCGACTTCGCAGTCCAGCAGATGGTCGGCTGCC
GTGCTCACACTCCTCTGGCTCGTTCATTACCTTTCCTCAAGAACATGCGC
TCTTACTCCTCCGAGACATGTCGGCTTGTCACTTGAGCATGACTCTACCT
TGCAAAGCAGTGAGCAACTCATGACTCAGCTGGAGCAGCTGAAGCGCCTG
CACGTGCTACAAGACTTTGATGCCCTCAATATCGAGTTGGATCAAGCCGT
GTGCATCCTAGAAGCTAGTGACACGATTGAATCTGGGTGTTTCATTAGAC
AGGATGCCTTGGGAGAGGAAGTGCTGCAATGGACGGGCGTTGTCAAAGAG
GCGGCAGATAGGCAGCTGGCGAAAATAGTCGATGGCTGCAGGGAAGAAGG
AGGGGAGGTTGTTTAG
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protein sequence of jgi.p|Nanoce1779_2|672956

>mRNA_7721-protein ID=mRNA_7721-protein|Name=jgi.p|Nanoce1779_2|672956|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MTLVYRLTSHRICLFTLIRFKKRRSIPTSQSSRWSAAVLTLLWLVHYLSS
RTCALTPPRHVGLSLEHDSTLQSSEQLMTQLEQLKRLHVLQDFDALNIEL
DQAVCILEASDTIESGCFIRQDALGEEVLQWTGVVKEAADRQLAKIVDGC
REEGGEVV*
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mRNA from alignment at scaffold_21:169413..170567+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7721 ID=mRNA_7721|Name=jgi.p|Nanoce1779_2|672956|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp|location=Sequence derived from alignment at scaffold_21:169413..170567+ (Nannochloropsis oceanica)
CGGCAGGTGAATACAAATGTTGGTGCGTCGCACGGGAGGGGTGGAGAGGT
TGAGATGGCCAGCAGAGACAGACCCTCGCGTCCATTCATTCACTCATTGC
TTGCTTGGCATCTACTACCTTGACATGTAGGCAAATGTGTTGAGTCCATG
GCCCAGCTTATCAAGACGGCCAAGGTGGGTGGTTTGGACTGGAGGATCGG
GTGGAGGGGTCGATAGTGTTGGAAGCTGAGAAAAATATGTCTCAGGCATA
TACTTCCCTCCCTTTTTCAACCCATGAATCCATGATTTTCTCCACCCCAT
GAATACGCATATGATCAGATGAGTTCGGTACGCGAGAATGCATATTTGGA
AGCCAATCGGGTGTCTGTCTTGACGGCCACCATCGTAAGTGGTTGGGTGT
GTGGGGTGTGTTGGGCCTGTTGTTCCTGTTGGCCTGGTTATGACTTTAGT
CTACCGCTTGACAAGCCATCGAATTTGTTTATTCACTCTTATCCGATTCA
AAAAAAGAAGAAGCATTCCGACTTCGCAGTCCAGCAGATGGTCGGCTGCC
GTGCTCACACTCCTCTGGCTCGTTCATTACCTTTCCTCAAGAACATGCGC
TCTTACTCCTCCGAGACATGTCGGCTTGTCACTTGAGCATGACTCTACCG
TTAAGTGCACACCAGCTCAACTCACTTTGAATTCAAATATATTCATGTCA
TTCCGTAACCTCTGACCTGCTCCGACATATGCAGTTGCAAAGCAGTGAGC
AACTCATGACTCAGCTGGAGCAGCTGAAGCGCCTGCACGTGCTACAAGAC
TTTGATGCCCTCAATATCGAGTTGGATCAAGCCGTGTGCATCCTAGAAGC
TAGGTAAGAGAATTTTAGCCGTAGAATTCCCTGGTGTGAGTTTGAGAGGG
TAAAGCAGTGAGGCTTGTATAATGGCGGCGCATGCGACTAGTTTTGGAGG
CGTAAAGGAGAATCGTGCGACTTTTTTTCGATCTTTATAATTGAACACCC
TGCTTAGTGACACGATTGAATCTGGGTGTTTCATTAGACAGGATGCCTTG
GGAGAGGAAGTGCTGCAATGGACGGGCGTTGTCAAAGAGGCGGCAGATAG
GCAGCTGGCGAAAATAGTCGATGGCTGCAGGGAAGAAGGAGGGGAGGTTG
TTTAG
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Coding sequence (CDS) from alignment at scaffold_21:169413..170567+

>mRNA_7721 ID=mRNA_7721|Name=jgi.p|Nanoce1779_2|672956|organism=Nannochloropsis oceanica|type=CDS|length=1431bp|location=Sequence derived from alignment at scaffold_21:169413..170567+ (Nannochloropsis oceanica)
ATGACTTTAGTCTACCGCTTGACAAGCCATCGAATTTGTTTATTCACTCT
TATCCGATTCAAAAAAAGAAGAAGCATTCCGACTTCGCAGTCCAGCAGAT
GGTCGGCTGCCGTGCTCACACTCCTCTGGCTCGTTCATTACCTTTCCTCA
AGAACATGCGCTCTTACTCCTCCGAGACATGTCGGCTTGTCACTTGAGCA
TGACTCTACCTTGCAAAGCAGTGAGCAACTCATGACTCAGCTGGAGCAGC
TGAAGCGCCTGCACGTGCTACAAGACTTTGATGCCCTCAATATCGAGTTG
GATCAAGCCGTGTGCATCCTAGAAGCTAGTGACACGATTGAATCTGGGTG
TTTCATTAGACAGGATGCCTTGGGAGAGGAAGTGCTGCAATGGACGGGCG
TTGTCAAAGAGGCGGCAGATAGGCAGCTGGCGAAAATAGTCGATGGCTGC
AGGGAAGAAGGAGGGGAGGTTGTTTAGATGACTTTAGTCTACCGCTTGAC
AAGCCATCGAATTTGTTTATTCACTCTTATCCGATTCAAAAAAAGAAGAA
GCATTCCGACTTCGCAGTCCAGCAGATGGTCGGCTGCCGTGCTCACACTC
CTCTGGCTCGTTCATTACCTTTCCTCAAGAACATGCGCTCTTACTCCTCC
GAGACATGTCGGCTTGTCACTTGAGCATGACTCTACCTTGCAAAGCAGTG
AGCAACTCATGACTCAGCTGGAGCAGCTGAAGCGCCTGCACGTGCTACAA
GACTTTGATGCCCTCAATATCGAGTTGGATCAAGCCGTGTGCATCCTAGA
AGCTAGTGACACGATTGAATCTGGGTGTTTCATTAGACAGGATGCCTTGG
GAGAGGAAGTGCTGCAATGGACGGGCGTTGTCAAAGAGGCGGCAGATAGG
CAGCTGGCGAAAATAGTCGATGGCTGCAGGGAAGAAGGAGGGGAGGTTGT
TTAGATGACTTTAGTCTACCGCTTGACAAGCCATCGAATTTGTTTATTCA
CTCTTATCCGATTCAAAAAAAGAAGAAGCATTCCGACTTCGCAGTCCAGC
AGATGGTCGGCTGCCGTGCTCACACTCCTCTGGCTCGTTCATTACCTTTC
CTCAAGAACATGCGCTCTTACTCCTCCGAGACATGTCGGCTTGTCACTTG
AGCATGACTCTACCTTGCAAAGCAGTGAGCAACTCATGACTCAGCTGGAG
CAGCTGAAGCGCCTGCACGTGCTACAAGACTTTGATGCCCTCAATATCGA
GTTGGATCAAGCCGTGTGCATCCTAGAAGCTAGTGACACGATTGAATCTG
GGTGTTTCATTAGACAGGATGCCTTGGGAGAGGAAGTGCTGCAATGGACG
GGCGTTGTCAAAGAGGCGGCAGATAGGCAGCTGGCGAAAATAGTCGATGG
CTGCAGGGAAGAAGGAGGGGAGGTTGTTTAG
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Synonyms
Publications