jgi.p|Nanoce1779_2|522718, mRNA_772 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|522718
Unique NamemRNA_772
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1011
Alignment locationscaffold_2:398164..399174 -

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Properties
Property NameValue
TranscriptId522804
TrackFilteredModels2
ProteinId522718
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:398164..399174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522718gene_772Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_772CDS_772Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522718mRNA_772-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_772 ID=mRNA_772|Name=jgi.p|Nanoce1779_2|522718|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp
ATGCGTGCCCACAACAAGGAAGAAGGGCCTGGCAACGCCGAAGAGGCAAA
CTTGTACGTCGACCGAAGCTGCACTGGATGCGGGACCTGCCGGAGCCTCT
GCCCTGGAGTGTTCGGTGCCTTGGGCTTACGCACTGTGGTCGAGCGAAAG
CCCTTGGATGAAATCGAAACAAGGGCTGCGTATCGTGCCATGGTTACTTG
TCCTCTAGGAGCTATTCGTCTACGTAAGCCTGACCCGTTGGTCAAAGAGG
TGGTGACGCATGATTTTCCTACTCCTCTCGATCCGGTGGCTTTGCCTGGG
GTGCATTTACTGGGGTATCACAATCGAGAGAGCATGGGGACGACGCCTTA
TTTGATTGTGCGGGAGGGAGGGGCGGGAAACATAATGATTGATGCTCCTA
GATTCAACGGCAGGTTAGCAATGCAGATTGAAGCGCTTGGGGGGATCAGG
TACAATATCGTGACTCATGAAGGCGCGGCTCCACACCATGACTTATGGCA
TGCATTTTTCCCGACGTCGGAAAGGGTGGTTCATCGGATGGATGTGACGA
GGGAAATGAAGGGGCAGGTGGAGGCAATGCTGCAGGGGAAGGGTCCCTGG
TTCATTGATGATGACATCAAGATAGTGGCCTTACCTGGCTATTCTGCTGG
GGCGGTTGGAGTTATTTACTACCCCCCACCATCACAGAGCAGTAGTATCA
GTGGAAGTATCAGCATCATCATCAGCAGCAGCAGGAATAATGGTGGCATC
TTGTTCAGCGGTCGTACCATTGGCTGGTCTCCGCGCTTGAACCGTCTGGA
CGGCTTCGCCCAATTTTCCCGGGGTAGCCTCGGCAAACAAGCAGAGAGCA
TCAAAGCTCTGGCAAAAGAAGACTTCGAATGGATTCTACCTTCTGAAGGA
CTCAAGTACCGGTTGCCAGAAGGAGGGAGGAAGGATGCAAAAGAGCGACT
GTTGACGGAGGCGGCGGATAGGTTTTCGGAGCTAGGGCGGGTGGGCGGGT
TGAGCATGTAG
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protein sequence of jgi.p|Nanoce1779_2|522718

>mRNA_772-protein ID=mRNA_772-protein|Name=jgi.p|Nanoce1779_2|522718|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MRAHNKEEGPGNAEEANLYVDRSCTGCGTCRSLCPGVFGALGLRTVVERK
PLDEIETRAAYRAMVTCPLGAIRLRKPDPLVKEVVTHDFPTPLDPVALPG
VHLLGYHNRESMGTTPYLIVREGGAGNIMIDAPRFNGRLAMQIEALGGIR
YNIVTHEGAAPHHDLWHAFFPTSERVVHRMDVTREMKGQVEAMLQGKGPW
FIDDDIKIVALPGYSAGAVGVIYYPPPSQSSSISGSISIIISSSRNNGGI
LFSGRTIGWSPRLNRLDGFAQFSRGSLGKQAESIKALAKEDFEWILPSEG
LKYRLPEGGRKDAKERLLTEAADRFSELGRVGGLSM*
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mRNA from alignment at scaffold_2:398164..399174-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_772 ID=mRNA_772|Name=jgi.p|Nanoce1779_2|522718|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp|location=Sequence derived from alignment at scaffold_2:398164..399174- (Nannochloropsis oceanica)
ATGCGTGCCCACAACAAGGAAGAAGGGCCTGGCAACGCCGAAGAGGCAAA
CTTGTACGTCGACCGAAGCTGCACTGGATGCGGGACCTGCCGGAGCCTCT
GCCCTGGAGTGTTCGGTGCCTTGGGCTTACGCACTGTGGTCGAGCGAAAG
CCCTTGGATGAAATCGAAACAAGGGCTGCGTATCGTGCCATGGTTACTTG
TCCTCTAGGAGCTATTCGTCTACGTAAGCCTGACCCGTTGGTCAAAGAGG
TGGTGACGCATGATTTTCCTACTCCTCTCGATCCGGTGGCTTTGCCTGGG
GTGCATTTACTGGGGTATCACAATCGAGAGAGCATGGGGACGACGCCTTA
TTTGATTGTGCGGGAGGGAGGGGCGGGAAACATAATGATTGATGCTCCTA
GATTCAACGGCAGGTTAGCAATGCAGATTGAAGCGCTTGGGGGGATCAGG
TACAATATCGTGACTCATGAAGGCGCGGCTCCACACCATGACTTATGGCA
TGCATTTTTCCCGACGTCGGAAAGGGTGGTTCATCGGATGGATGTGACGA
GGGAAATGAAGGGGCAGGTGGAGGCAATGCTGCAGGGGAAGGGTCCCTGG
TTCATTGATGATGACATCAAGATAGTGGCCTTACCTGGCTATTCTGCTGG
GGCGGTTGGAGTTATTTACTACCCCCCACCATCACAGAGCAGTAGTATCA
GTGGAAGTATCAGCATCATCATCAGCAGCAGCAGGAATAATGGTGGCATC
TTGTTCAGCGGTCGTACCATTGGCTGGTCTCCGCGCTTGAACCGTCTGGA
CGGCTTCGCCCAATTTTCCCGGGGTAGCCTCGGCAAACAAGCAGAGAGCA
TCAAAGCTCTGGCAAAAGAAGACTTCGAATGGATTCTACCTTCTGAAGGA
CTCAAGTACCGGTTGCCAGAAGGAGGGAGGAAGGATGCAAAAGAGCGACT
GTTGACGGAGGCGGCGGATAGGTTTTCGGAGCTAGGGCGGGTGGGCGGGT
TGAGCATGTAG
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Coding sequence (CDS) from alignment at scaffold_2:398164..399174-

>mRNA_772 ID=mRNA_772|Name=jgi.p|Nanoce1779_2|522718|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at scaffold_2:398164..399174- (Nannochloropsis oceanica)
ATGCGTGCCCACAACAAGGAAGAAGGGCCTGGCAACGCCGAAGAGGCAAA
CTTGTACGTCGACCGAAGCTGCACTGGATGCGGGACCTGCCGGAGCCTCT
GCCCTGGAGTGTTCGGTGCCTTGGGCTTACGCACTGTGGTCGAGCGAAAG
CCCTTGGATGAAATCGAAACAAGGGCTGCGTATCGTGCCATGGTTACTTG
TCCTCTAGGAGCTATTCGTCTACGTAAGCCTGACCCGTTGGTCAAAGAGG
TGGTGACGCATGATTTTCCTACTCCTCTCGATCCGGTGGCTTTGCCTGGG
GTGCATTTACTGGGGTATCACAATCGAGAGAGCATGGGGACGACGCCTTA
TTTGATTGTGCGGGAGGGAGGGGCGGGAAACATAATGATTGATGCTCCTA
GATTCAACGGCAGGTTAGCAATGCAGATTGAAGCGCTTGGGGGGATCAGG
TACAATATCGTGACTCATGAAGGCGCGGCTCCACACCATGACTTATGGCA
TGCATTTTTCCCGACGTCGGAAAGGGTGGTTCATCGGATGGATGTGACGA
GGGAAATGAAGGGGCAGGTGGAGGCAATGCTGCAGGGGAAGGGTCCCTGG
TTCATTGATGATGACATCAAGATAGTGGCCTTACCTGGCTATTCTGCTGG
GGCGGTTGGAGTTATTTACTACCCCCCACCATCACAGAGCAGTAGTATCA
GTGGAAGTATCAGCATCATCATCAGCAGCAGCAGGAATAATGGTGGCATC
TTGTTCAGCGGTCGTACCATTGGCTGGTCTCCGCGCTTGAACCGTCTGGA
CGGCTTCGCCCAATTTTCCCGGGGTAGCCTCGGCAAACAAGCAGAGAGCA
TCAAAGCTCTGGCAAAAGAAGACTTCGAATGGATTCTACCTTCTGAAGGA
CTCAAGTACCGGTTGCCAGAAGGAGGGAGGAAGGATGCAAAAGAGCGACT
GTTGACGGAGGCGGCGGATAGGTTTTCGGAGCTAGGGCGGGTGGGCGGGT
TGAGCATGTAG
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Synonyms
Publications