jgi.p|Nanoce1779_2|599761, mRNA_7718 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599761
Unique Name	mRNA_7718
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	917
Alignment location	scaffold_21:156698..158633 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599847
Track	FilteredModels2
ProteinId	599761

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:156698..158633 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599761	gene_7718	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599761	mRNA_7718-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7718	CDS_7718	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:156698..158633+
coding sequence from alignment at scaffold_21:156698..158633+

mRNA sequence

>mRNA_7718 ID=mRNA_7718|Name=jgi.p|Nanoce1779_2|599761|organism=Nannochloropsis oceanica|type=mRNA|length=917bp
ACAGACACAAAGGAGAGGAGCTTCTCCCTCTCAAGGGCGCACCGCACTCG
CCGACCACCATGAAGATGAAAGGCCACGCCACCTCCTGCTTTGTGGCTAT
TCTGAGCGTAATTTTCTTGGTCTCGGCATCGGAGGTCGTCGAGCTCACGG
ATGCCAATTTTGAGCATCTTACTCAGGCCTCCACAGGTGCCACAACTGGC
GATTGGTTTGTTGCTTTCTCCGCTCCGTGGTGTGGACATTGCAAGCAATT
GGTCCCTACCTGGGAGGAGATAGCCGCGGAGCTCAAGGGTGAGGTGAATA
TCGCCAAAGTTGATGCCACTGTCAGCACCAATTTGGCTACGCGCTTCGGC
ATTCGGGCCTTTCCCATGCTGAAGTTTTTTCATCAAGGCAACCTCTACAA
CTACCGAGGACCTCGCGACGTAGAGCATCTGATGGAATTTGCGCTGGGTG
GATACAAGAGTACGCCTTCCGTCCCTGTGCCCATCCCTCCCACGTTCGTG
GAACTGGTCAAGTCACAGATAGCTGAATTGAAAGAAGGTGTAGAGGCTCT
CTTCTATCAAATTGTGAAAGAGGTGGAGGCGGTGTCGAAGGGAGAAAGGC
CTTTGGACGCACCTTTCATCGTCATGATGAGCATGGTTTTCTTATTTTTC
GGTGTCGTCATCCTGACTTTTGCATCTCTCTTCACGGGGCCTGCGGCTTC
CCTGGAAGACAAGGCGGTGATCGATGCCAAGAAGAAGAAGTAAGCTCGCC
CAACATGAGTACATATGTGGGGGGAAGGACTTATAGAGAAGAGGAGCGAT
ATGAAGGAAAGAAAGCGAAAAGAGGACCGACAGAATAGAAGACAAAATAA
TTAAAGAAAGGACCTGGGCGTTTGGAACTACACAGAAGTGAAATAGAAAT
CTAACAAAGCGTATGAT

protein sequence of jgi.p|Nanoce1779_2|599761

>mRNA_7718-protein ID=mRNA_7718-protein|Name=jgi.p|Nanoce1779_2|599761|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MKMKGHATSCFVAILSVIFLVSASEVVELTDANFEHLTQASTGATTGDWF
VAFSAPWCGHCKQLVPTWEEIAAELKGEVNIAKVDATVSTNLATRFGIRA
FPMLKFFHQGNLYNYRGPRDVEHLMEFALGGYKSTPSVPVPIPPTFVELV
KSQIAELKEGVEALFYQIVKEVEAVSKGERPLDAPFIVMMSMVFLFFGVV
ILTFASLFTGPAASLEDKAVIDAKKKK*

mRNA from alignment at scaffold_21:156698..158633+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7718 ID=mRNA_7718|Name=jgi.p|Nanoce1779_2|599761|organism=Nannochloropsis oceanica|type=mRNA|length=1936bp|location=Sequence derived from alignment at scaffold_21:156698..158633+ (Nannochloropsis oceanica)
ACAGACACAAAGGAGAGGAGCTTCTCCCTCTCAAGGGCGCACCGCACTCG
CCGACCACCATGAAGATGAAAGGCCACGCCACCTCCTGCTTTGTGGTAAG
TGCCTCGACGAACGCTATTCGTCGCAGTATCTCTCTCCTTGCTTTGCTGC
TCGTATAGTTGTCTCCATCACTGCTGCACAAGACGCCAGGAGCATCTTCC
CATTGCTGCAGAATGCTGCGCCCCTCTTTGTCTTGATTGGGAGGGAGAGT
CATTTGGTTCGCTACCAGAGCTTTCCAACGCCGTGGCCTATCGCTTCTGT
CTGCATCTTAAAATTCGGAACCATATGGAAGTTCATTAATGCCCTCCCAA
TTTCTATCGCAGACCTCGAGACGGTGCATTGTCTTGGTGAAGTGGTTTTC
AATTTTCCTCCGCACACAAACCCACGCCGCATCACACCCACACACTCTCT
ACTCATAGGCTATTCTGAGCGTAATTTTCTTGGTCTCGGCATCGGAGGTC
GTCGAGCTCACGGATGCCAATTTTGAGCATCTTACTCAGGCCTCCACAGG
TGCCACAACTGGCGATTGGTTTGTTGCTTTCTCCGCTCCGTGGTGTGGAC
ATTGCAAGCAATTGGTCCCTACCTGGGAGGAGATAGCCGCGGAGCTCAAG
GTACGTCAATGTCTGATTGGAACAAAAGCGATGGGTAGTGTTTGGGGCTT
CGAAGGGGCTGAAGAGCTAGAAGCACATTTTCGAAATTCCGCTTTTGTGG
CCTCAATATGGGCATGGTCCAACAATTTTTCGCGGCACCGCTCACACATT
TTGACTCGCGCATGCCCGATTTTCAAATCAAATATAGGGTGAGGTGAATA
TCGCCAAAGTTGATGCCACTGTCAGCACCAATTTGGCTACGCGCTTCGGC
ATTCGGGTACGTGTGCACGCGCGCACAAGTTGTCTTTTTCGAAAATAGAT
CCACTCTAGCTAGACGTTTTCCCCCTGTACACATAAATATATATATTTAT
GTGTGTGTGTGTGGTATATTTTTCTCCTCTGGTGCCTTCCACTGTCATTT
CGGCCGTCACACTCATTGTTTTCCGATCGTCATCAGTGAAGCAATCTTTC
TTAATCAATCCAATACTTTGCTTCCATTTTTTGCAACTCAATGCAGTTTT
TCATCAACAATTTCGCAGGCCTTTCCCATGCTGAAGTTTTTTCATCAAGG
CAACCTCTACAACTACCGAGGACCTCGCGACGTAGAGCATCTGATGGAAT
TTGCGCTGGTAGGTGTCGGGTTATTTTCTTAATAGCATTGCTTCGCTTTA
CGCCCAGTATATTTGTCCACACTCTCTCCTTGCTCGACCGCTGCTGCTAA
TTTATATTACGCCTTTTCGATAGATATGTTCGCCTGCTCATATGTAGGAC
CTTCTACTACCTCACGTCGTGCTTATCAACCTTCCATGAAACCCATTGTC
TACAAAACCTGATAGGGTGGATACAAGAGTACGCCTTCCGTCCCTGTGCC
CATCCCTCCCACGTTCGTGGAACTGGTCAAGTCACAGATAGCTGAATTGA
AAGAAGGTGTAGAGGCTCTCTTCTATCAAATTGTGAAAGAGGTGGAGGCG
GTGTCGAAGGGAGAAAGGCCTTTGGACGCACCTTTCATCGTCATGATGAG
CATGGTTTTCTTATTTTTCGGTGTCGTCATCCTGACTTTTGCATCTCTCT
TCACGGGGCCTGCGGCTTCCCTGGAAGACAAGGCGGTGATCGATGCCAAG
AAGAAGAAGTAAGCTCGCCCAACATGAGTACATATGTGGGGGGAAGGACT
TATAGAGAAGAGGAGCGATATGAAGGAAAGAAAGCGAAAAGAGGACCGAC
AGAATAGAAGACAAAATAATTAAAGAAAGGACCTGGGCGTTTGGAACTAC
ACAGAAGTGAAATAGAAATCTAACAAAGCGTATGAT

Coding sequence (CDS) from alignment at scaffold_21:156698..158633+

>mRNA_7718 ID=mRNA_7718|Name=jgi.p|Nanoce1779_2|599761|organism=Nannochloropsis oceanica|type=CDS|length=3420bp|location=Sequence derived from alignment at scaffold_21:156698..158633+ (Nannochloropsis oceanica)
ATGAAGATGAAAGGCCACGCCACCTCCTGCTTTGTGGCTATTCTGAGCGT
AATTTTCTTGGTCTCGGCATCGGAGGTCGTCGAGCTCACGGATGCCAATT
TTGAGCATCTTACTCAGGCCTCCACAGGTGCCACAACTGGCGATTGGTTT
GTTGCTTTCTCCGCTCCGTGGTGTGGACATTGCAAGCAATTGGTCCCTAC
CTGGGAGGAGATAGCCGCGGAGCTCAAGGGTGAGGTGAATATCGCCAAAG
TTGATGCCACTGTCAGCACCAATTTGGCTACGCGCTTCGGCATTCGGGCC
TTTCCCATGCTGAAGTTTTTTCATCAAGGCAACCTCTACAACTACCGAGG
ACCTCGCGACGTAGAGCATCTGATGGAATTTGCGCTGGGTGGATACAAGA
GTACGCCTTCCGTCCCTGTGCCCATCCCTCCCACGTTCGTGGAACTGGTC
AAGTCACAGATAGCTGAATTGAAAGAAGGTGTAGAGGCTCTCTTCTATCA
AATTGTGAAAGAGGTGGAGGCGGTGTCGAAGGGAGAAAGGCCTTTGGACG
CACCTTTCATCGTCATGATGAGCATGGTTTTCTTATTTTTCGGTGTCGTC
ATCCTGACTTTTGCATCTCTCTTCACGGGGCCTGCGGCTTCCCTGGAAGA
CAAGGCGGTGATCGATGCCAAGAAGAAGAAGTAAATGAAGATGAAAGGCC
ACGCCACCTCCTGCTTTGTGGCTATTCTGAGCGTAATTTTCTTGGTCTCG
GCATCGGAGGTCGTCGAGCTCACGGATGCCAATTTTGAGCATCTTACTCA
GGCCTCCACAGGTGCCACAACTGGCGATTGGTTTGTTGCTTTCTCCGCTC
CGTGGTGTGGACATTGCAAGCAATTGGTCCCTACCTGGGAGGAGATAGCC
GCGGAGCTCAAGGGTGAGGTGAATATCGCCAAAGTTGATGCCACTGTCAG
CACCAATTTGGCTACGCGCTTCGGCATTCGGGCCTTTCCCATGCTGAAGT
TTTTTCATCAAGGCAACCTCTACAACTACCGAGGACCTCGCGACGTAGAG
CATCTGATGGAATTTGCGCTGGGTGGATACAAGAGTACGCCTTCCGTCCC
TGTGCCCATCCCTCCCACGTTCGTGGAACTGGTCAAGTCACAGATAGCTG
AATTGAAAGAAGGTGTAGAGGCTCTCTTCTATCAAATTGTGAAAGAGGTG
GAGGCGGTGTCGAAGGGAGAAAGGCCTTTGGACGCACCTTTCATCGTCAT
GATGAGCATGGTTTTCTTATTTTTCGGTGTCGTCATCCTGACTTTTGCAT
CTCTCTTCACGGGGCCTGCGGCTTCCCTGGAAGACAAGGCGGTGATCGAT
GCCAAGAAGAAGAAGTAAATGAAGATGAAAGGCCACGCCACCTCCTGCTT
TGTGGCTATTCTGAGCGTAATTTTCTTGGTCTCGGCATCGGAGGTCGTCG
AGCTCACGGATGCCAATTTTGAGCATCTTACTCAGGCCTCCACAGGTGCC
ACAACTGGCGATTGGTTTGTTGCTTTCTCCGCTCCGTGGTGTGGACATTG
CAAGCAATTGGTCCCTACCTGGGAGGAGATAGCCGCGGAGCTCAAGGGTG
AGGTGAATATCGCCAAAGTTGATGCCACTGTCAGCACCAATTTGGCTACG
CGCTTCGGCATTCGGGCCTTTCCCATGCTGAAGTTTTTTCATCAAGGCAA
CCTCTACAACTACCGAGGACCTCGCGACGTAGAGCATCTGATGGAATTTG
CGCTGGGTGGATACAAGAGTACGCCTTCCGTCCCTGTGCCCATCCCTCCC
ACGTTCGTGGAACTGGTCAAGTCACAGATAGCTGAATTGAAAGAAGGTGT
AGAGGCTCTCTTCTATCAAATTGTGAAAGAGGTGGAGGCGGTGTCGAAGG
GAGAAAGGCCTTTGGACGCACCTTTCATCGTCATGATGAGCATGGTTTTC
TTATTTTTCGGTGTCGTCATCCTGACTTTTGCATCTCTCTTCACGGGGCC
TGCGGCTTCCCTGGAAGACAAGGCGGTGATCGATGCCAAGAAGAAGAAGT
AAATGAAGATGAAAGGCCACGCCACCTCCTGCTTTGTGGCTATTCTGAGC
GTAATTTTCTTGGTCTCGGCATCGGAGGTCGTCGAGCTCACGGATGCCAA
TTTTGAGCATCTTACTCAGGCCTCCACAGGTGCCACAACTGGCGATTGGT
TTGTTGCTTTCTCCGCTCCGTGGTGTGGACATTGCAAGCAATTGGTCCCT
ACCTGGGAGGAGATAGCCGCGGAGCTCAAGGGTGAGGTGAATATCGCCAA
AGTTGATGCCACTGTCAGCACCAATTTGGCTACGCGCTTCGGCATTCGGG
CCTTTCCCATGCTGAAGTTTTTTCATCAAGGCAACCTCTACAACTACCGA
GGACCTCGCGACGTAGAGCATCTGATGGAATTTGCGCTGGGTGGATACAA
GAGTACGCCTTCCGTCCCTGTGCCCATCCCTCCCACGTTCGTGGAACTGG
TCAAGTCACAGATAGCTGAATTGAAAGAAGGTGTAGAGGCTCTCTTCTAT
CAAATTGTGAAAGAGGTGGAGGCGGTGTCGAAGGGAGAAAGGCCTTTGGA
CGCACCTTTCATCGTCATGATGAGCATGGTTTTCTTATTTTTCGGTGTCG
TCATCCTGACTTTTGCATCTCTCTTCACGGGGCCTGCGGCTTCCCTGGAA
GACAAGGCGGTGATCGATGCCAAGAAGAAGAAGTAAATGAAGATGAAAGG
CCACGCCACCTCCTGCTTTGTGGCTATTCTGAGCGTAATTTTCTTGGTCT
CGGCATCGGAGGTCGTCGAGCTCACGGATGCCAATTTTGAGCATCTTACT
CAGGCCTCCACAGGTGCCACAACTGGCGATTGGTTTGTTGCTTTCTCCGC
TCCGTGGTGTGGACATTGCAAGCAATTGGTCCCTACCTGGGAGGAGATAG
CCGCGGAGCTCAAGGGTGAGGTGAATATCGCCAAAGTTGATGCCACTGTC
AGCACCAATTTGGCTACGCGCTTCGGCATTCGGGCCTTTCCCATGCTGAA
GTTTTTTCATCAAGGCAACCTCTACAACTACCGAGGACCTCGCGACGTAG
AGCATCTGATGGAATTTGCGCTGGGTGGATACAAGAGTACGCCTTCCGTC
CCTGTGCCCATCCCTCCCACGTTCGTGGAACTGGTCAAGTCACAGATAGC
TGAATTGAAAGAAGGTGTAGAGGCTCTCTTCTATCAAATTGTGAAAGAGG
TGGAGGCGGTGTCGAAGGGAGAAAGGCCTTTGGACGCACCTTTCATCGTC
ATGATGAGCATGGTTTTCTTATTTTTCGGTGTCGTCATCCTGACTTTTGC
ATCTCTCTTCACGGGGCCTGCGGCTTCCCTGGAAGACAAGGCGGTGATCG
ATGCCAAGAAGAAGAAGTAA

Synonyms

Publications