jgi.p|Nanoce1779_2|632447, mRNA_7716 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|632447
Unique Name	mRNA_7716
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2221
Alignment location	scaffold_21:153000..155297 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	632533
Track	FilteredModels2
ProteinId	632447

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:153000..155297 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632447	gene_7716	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632447	mRNA_7716-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7716	CDS_7716	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:153000..155297+
coding sequence from alignment at scaffold_21:153000..155297+

mRNA sequence

>mRNA_7716 ID=mRNA_7716|Name=jgi.p|Nanoce1779_2|632447|organism=Nannochloropsis oceanica|type=mRNA|length=2221bp
ACAGAGACCTGACAGCATGAAATCCTACTCGACCCTCTTGGGGGCCGCGG
CCTTGCTTGCCCTCCAAGTGATGCCAACCCAAGGGTTCGTGGGGCCCCTG
AAGCCAGCCACCTCAACAACCAAGCTCTCCGTCTCCTTCCTTGGGAATGG
TAGCTCCAAGAAGGGTTCTGCCAGCAAGGGTGTGCTAGTTGTCGGTGCCA
CAGGGAAAACGGGAAAGCGTGTGGTAGAAATTTTGCAAAGGAAGGGAACG
AAGGTGGCCGCCGGGGTACGGGATTTGGCCAAGGGTGAAGAAACCTTGGG
CAGGCCCAGTGGAAAGCTTTCCTTCCTCGAGGTCGATGTCGTCGCGGATT
CGCCTGCGTCCCTGATCGAGAAGGTCGCTGGGTACTCTGCGGTGATATGT
GCGACAGGCTACTCGCCTTCCGGTCCCATTGATATTTTGGGCCCCTACAA
AGTTGACAATAAAGGCACTATCAAGCTTGCCGAGGCGCTCGTTGCCGCAG
GCGTCCCCAAAATGGTGCTTGTCTCGTCTTTGCTTACAAATGGTTGGGAG
GCTGGGCAAGGCTTGAACAAGAACTTCATAATCCTCAATCTCTTCGGAGG
TGTATTGGCTGCGAAGAACAATGCGGAGCGAAAGATAATGAAGTCGACAC
TTGACTACACCATAGTTCGACCTGGTGGGTTAAAGGAAGCTGCTCCAGAA
GGCCAAATCAGATACGGCAAGGCAGATACCATCTTTGGGGGTTCTATTTC
TCGTTATTCGGTTGCAGAAGTGTGCGTGGCCGCTTTGACCTCCAAATCTG
CGTCCAATAAAGTGGTAGAGATTGTTGCGGAACCAGACGCAGCCAAGCTA
AGTATCGAGCAAGGGTTCGCCTCAGTCTAGAGAGTTTCCGCTAGGATTCG
TCGACCAAAAGACCGAAATCAAAATGTGGACAAAGAATAAGTAGAATGAA
AAGAATTGACAAAACCCCTGGCCCTTTTACAATTTCATTTTTTTAACTTG
ACTTTCGAGGGGTTGTTTCAGGGAATGCTGCTAGAAGACGATTCGACATC
TCGAAGGCAAGAATAGCAGTATTTGAATGCAAATTCTATTTAGAAGTAAG
AAACAGCTTTGCGGCGATTATTGTTATGTTGCGTGATGCCGCCTCGACCT
CCTCCACCCCTTCCGCCCCGCCCACTTTGCTTGCCTTTTCCCCTGTCAGC
AGCAACTCCACCCATAAAAGATACAGTCTTGTTACCCTTGCCGTCTGCGG
GGGAAGCGTGCTTGTTAAAGAGTTTGACTTGGACCTTGCCCCACCGCACC
TTCTTGTTGCTACCGGCATTGCCAGCCCCTCCCACCGACGGCATAGCAGC
ACCTCCTCGCTGCACGGAGTCGATGTAATAGCCAACGCCCTGTTGCCCCT
TCTTGAAGGCGTATCCACACTTGCCTCCCGCAAACTTCTTGGACGGGATG
AATACCGGCTCGGCAGCAGGCGTGGAGGACGCAGCAGCCGTAAGGGTTTG
CTTTTTCACATTCTCTGACGATGGTGCTGCTTGCCGTGTAGCAGCCCCAT
TCACCATGACTTTTGTCTTCTTGATCGCCGCCGCTGCCGCCGCTGCCGCA
GTCTTCCGTGTGGTCGCCGTCTTTTCCTTCCTTTCCGCGGGCACCTTCAC
CACAGCATCCTTATGCTTTATCCCTTGCTGTAGACCCCCGGCCGTTTTGG
CTGCACTCATCGTATCTAAGGCCTTCTCCTTCTCGGCGTTGCGCTTGCCG
CTGCTGCTCTTGGTCTCGCTCGGCTGAATGGCTGGAAGAATGACATTTTT
TTTTGTCAGTATCGTCGTATCCTCTTTTCCACCCTTCTTCGAAAGCTTAG
TCTTTTTCTCCGCCTTGTCACCCAGAGCTCCCTTCGCTGGCTTCGACTCA
CTCGACACCGGCGTAAGAGTGGGTGAGGCCATCCGTTTTTCTTCCTTCTT
GGCCTTCTTGACGTCGATTACCACAGCCAGCTTCTCCCCTCCCTTTCGCT
GCTGCTGCTGTTTGAGTGGAACAATCTCTCTCTGGGCCTTGCGCTTCTTG
CTGTCCTTTCCGGGTGCAGCATGAGAATCCTCCTCCTCCTCTTCCTCCTC
CCCAGCCTCTTTTTCTTTATACTCCTCATTTTTGGCCTTACCTTCCTCTT
CCTTACTTCCAGCCTCATCTTTATCTTCATCTTCATCCATCCAATCGTCC
TCCTCCTCCTCCTCCTCCTCC

protein sequence of jgi.p|Nanoce1779_2|632447

>mRNA_7716-protein ID=mRNA_7716-protein|Name=jgi.p|Nanoce1779_2|632447|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MKSYSTLLGAAALLALQVMPTQGFVGPLKPATSTTKLSVSFLGNGSSKKG
SASKGVLVVGATGKTGKRVVEILQRKGTKVAAGVRDLAKGEETLGRPSGK
LSFLEVDVVADSPASLIEKVAGYSAVICATGYSPSGPIDILGPYKVDNKG
TIKLAEALVAAGVPKMVLVSSLLTNGWEAGQGLNKNFIILNLFGGVLAAK
NNAERKIMKSTLDYTIVRPGGLKEAAPEGQIRYGKADTIFGGSISRYSVA
EVCVAALTSKSASNKVVEIVAEPDAAKLSIEQGFASV*

mRNA from alignment at scaffold_21:153000..155297+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7716 ID=mRNA_7716|Name=jgi.p|Nanoce1779_2|632447|organism=Nannochloropsis oceanica|type=mRNA|length=2298bp|location=Sequence derived from alignment at scaffold_21:153000..155297+ (Nannochloropsis oceanica)
ACAGAGACCTGACAGCATGAAATCCTACTCGACCCTCTTGGGGGCCGCGG
CCTTGCTTGCCCTCCAAGTGATGCCAACCCAAGGGTTCGTGGGGCCCCTG
AAGCCAGCCACCTCAACAACCAAGCTCTCCGTCTCCTTCCTTGGGAATGG
TAGCTCCAAGAAGGGTTCTGCCAGCAAGGGTGTGCTAGTTGTCGGGTACG
TCCACTATCTTTCTCGTCCCCTCCCCTCCCTCCCTTTCTCTAACCCTTGC
CTTCCCTCCTTCCTTTCAACAGTGCCACAGGGAAAACGGGAAAGCGTGTG
GTAGAAATTTTGCAAAGGAAGGGAACGAAGGTGGCCGCCGGGGTACGGGA
TTTGGCCAAGGGTGAAGAAACCTTGGGCAGGCCCAGTGGAAAGCTTTCCT
TCCTCGAGGTCGATGTCGTCGCGGATTCGCCTGCGTCCCTGATCGAGAAG
GTCGCTGGGTACTCTGCGGTGATATGTGCGACAGGCTACTCGCCTTCCGG
TCCCATTGATATTTTGGGCCCCTACAAAGTTGACAATAAAGGCACTATCA
AGCTTGCCGAGGCGCTCGTTGCCGCAGGCGTCCCCAAAATGGTGCTTGTC
TCGTCTTTGCTTACAAATGGTTGGGAGGCTGGGCAAGGCTTGAACAAGAA
CTTCATAATCCTCAATCTCTTCGGAGGTGTATTGGCTGCGAAGAACAATG
CGGAGCGAAAGATAATGAAGTCGACACTTGACTACACCATAGTTCGACCT
GGTGGGTTAAAGGAAGCTGCTCCAGAAGGCCAAATCAGATACGGCAAGGC
AGATACCATCTTTGGGGGTTCTATTTCTCGTTATTCGGTTGCAGAAGTGT
GCGTGGCCGCTTTGACCTCCAAATCTGCGTCCAATAAAGTGGTAGAGATT
GTTGCGGAACCAGACGCAGCCAAGCTAAGTATCGAGCAAGGGTTCGCCTC
AGTCTAGAGAGTTTCCGCTAGGATTCGTCGACCAAAAGACCGAAATCAAA
ATGTGGACAAAGAATAAGTAGAATGAAAAGAATTGACAAAACCCCTGGCC
CTTTTACAATTTCATTTTTTTAACTTGACTTTCGAGGGGTTGTTTCAGGG
AATGCTGCTAGAAGACGATTCGACATCTCGAAGGCAAGAATAGCAGTATT
TGAATGCAAATTCTATTTAGAAGTAAGAAACAGCTTTGCGGCGATTATTG
TTATGTTGCGTGATGCCGCCTCGACCTCCTCCACCCCTTCCGCCCCGCCC
ACTTTGCTTGCCTTTTCCCCTGTCAGCAGCAACTCCACCCATAAAAGATA
CAGTCTTGTTACCCTTGCCGTCTGCGGGGGAAGCGTGCTTGTTAAAGAGT
TTGACTTGGACCTTGCCCCACCGCACCTTCTTGTTGCTACCGGCATTGCC
AGCCCCTCCCACCGACGGCATAGCAGCACCTCCTCGCTGCACGGAGTCGA
TGTAATAGCCAACGCCCTGTTGCCCCTTCTTGAAGGCGTATCCACACTTG
CCTCCCGCAAACTTCTTGGACGGGATGAATACCGGCTCGGCAGCAGGCGT
GGAGGACGCAGCAGCCGTAAGGGTTTGCTTTTTCACATTCTCTGACGATG
GTGCTGCTTGCCGTGTAGCAGCCCCATTCACCATGACTTTTGTCTTCTTG
ATCGCCGCCGCTGCCGCCGCTGCCGCAGTCTTCCGTGTGGTCGCCGTCTT
TTCCTTCCTTTCCGCGGGCACCTTCACCACAGCATCCTTATGCTTTATCC
CTTGCTGTAGACCCCCGGCCGTTTTGGCTGCACTCATCGTATCTAAGGCC
TTCTCCTTCTCGGCGTTGCGCTTGCCGCTGCTGCTCTTGGTCTCGCTCGG
CTGAATGGCTGGAAGAATGACATTTTTTTTTGTCAGTATCGTCGTATCCT
CTTTTCCACCCTTCTTCGAAAGCTTAGTCTTTTTCTCCGCCTTGTCACCC
AGAGCTCCCTTCGCTGGCTTCGACTCACTCGACACCGGCGTAAGAGTGGG
TGAGGCCATCCGTTTTTCTTCCTTCTTGGCCTTCTTGACGTCGATTACCA
CAGCCAGCTTCTCCCCTCCCTTTCGCTGCTGCTGCTGTTTGAGTGGAACA
ATCTCTCTCTGGGCCTTGCGCTTCTTGCTGTCCTTTCCGGGTGCAGCATG
AGAATCCTCCTCCTCCTCTTCCTCCTCCCCAGCCTCTTTTTCTTTATACT
CCTCATTTTTGGCCTTACCTTCCTCTTCCTTACTTCCAGCCTCATCTTTA
TCTTCATCTTCATCCATCCAATCGTCCTCCTCCTCCTCCTCCTCCTCC

Coding sequence (CDS) from alignment at scaffold_21:153000..155297+

>mRNA_7716 ID=mRNA_7716|Name=jgi.p|Nanoce1779_2|632447|organism=Nannochloropsis oceanica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_21:153000..155297+ (Nannochloropsis oceanica)
ATGAAATCCTACTCGACCCTCTTGGGGGCCGCGGCCTTGCTTGCCCTCCA
AGTGATGCCAACCCAAGGGTTCGTGGGGCCCCTGAAGCCAGCCACCTCAA
CAACCAAGCTCTCCGTCTCCTTCCTTGGGAATGGTAGCTCCAAGAAGGGT
TCTGCCAGCAAGGGTGTGCTAGTTGTCGGTGCCACAGGGAAAACGGGAAA
GCGTGTGGTAGAAATTTTGCAAAGGAAGGGAACGAAGGTGGCCGCCGGGG
TACGGGATTTGGCCAAGGGTGAAGAAACCTTGGGCAGGCCCAGTGGAAAG
CTTTCCTTCCTCGAGGTCGATGTCGTCGCGGATTCGCCTGCGTCCCTGAT
CGAGAAGGTCGCTGGGTACTCTGCGGTGATATGTGCGACAGGCTACTCGC
CTTCCGGTCCCATTGATATTTTGGGCCCCTACAAAGTTGACAATAAAGGC
ACTATCAAGCTTGCCGAGGCGCTCGTTGCCGCAGGCGTCCCCAAAATGGT
GCTTGTCTCGTCTTTGCTTACAAATGGTTGGGAGGCTGGGCAAGGCTTGA
ACAAGAACTTCATAATCCTCAATCTCTTCGGAGGTGTATTGGCTGCGAAG
AACAATGCGGAGCGAAAGATAATGAAGTCGACACTTGACTACACCATAGT
TCGACCTGGTGGGTTAAAGGAAGCTGCTCCAGAAGGCCAAATCAGATACG
GCAAGGCAGATACCATCTTTGGGGGTTCTATTTCTCGTTATTCGGTTGCA
GAAGTGTGCGTGGCCGCTTTGACCTCCAAATCTGCGTCCAATAAAGTGGT
AGAGATTGTTGCGGAACCAGACGCAGCCAAGCTAAGTATCGAGCAAGGGT
TCGCCTCAGTCTAGATGAAATCCTACTCGACCCTCTTGGGGGCCGCGGCC
TTGCTTGCCCTCCAAGTGATGCCAACCCAAGGGTTCGTGGGGCCCCTGAA
GCCAGCCACCTCAACAACCAAGCTCTCCGTCTCCTTCCTTGGGAATGGTA
GCTCCAAGAAGGGTTCTGCCAGCAAGGGTGTGCTAGTTGTCGGTGCCACA
GGGAAAACGGGAAAGCGTGTGGTAGAAATTTTGCAAAGGAAGGGAACGAA
GGTGGCCGCCGGGGTACGGGATTTGGCCAAGGGTGAAGAAACCTTGGGCA
GGCCCAGTGGAAAGCTTTCCTTCCTCGAGGTCGATGTCGTCGCGGATTCG
CCTGCGTCCCTGATCGAGAAGGTCGCTGGGTACTCTGCGGTGATATGTGC
GACAGGCTACTCGCCTTCCGGTCCCATTGATATTTTGGGCCCCTACAAAG
TTGACAATAAAGGCACTATCAAGCTTGCCGAGGCGCTCGTTGCCGCAGGC
GTCCCCAAAATGGTGCTTGTCTCGTCTTTGCTTACAAATGGTTGGGAGGC
TGGGCAAGGCTTGAACAAGAACTTCATAATCCTCAATCTCTTCGGAGGTG
TATTGGCTGCGAAGAACAATGCGGAGCGAAAGATAATGAAGTCGACACTT
GACTACACCATAGTTCGACCTGGTGGGTTAAAGGAAGCTGCTCCAGAAGG
CCAAATCAGATACGGCAAGGCAGATACCATCTTTGGGGGTTCTATTTCTC
GTTATTCGGTTGCAGAAGTGTGCGTGGCCGCTTTGACCTCCAAATCTGCG
TCCAATAAAGTGGTAGAGATTGTTGCGGAACCAGACGCAGCCAAGCTAAG
TATCGAGCAAGGGTTCGCCTCAGTCTAG

Synonyms

Publications