jgi.p|Nanoce1779_2|654270, mRNA_7713 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|654270
Unique Name	mRNA_7713
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1631
Alignment location	scaffold_21:146972..149482 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	654356
Track	FilteredModels2
ProteinId	654270

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:146972..149482 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|654270	gene_7713	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|654270	mRNA_7713-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7713	CDS_7713	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:146972..149482+
coding sequence from alignment at scaffold_21:146972..149482+

mRNA sequence

>mRNA_7713 ID=mRNA_7713|Name=jgi.p|Nanoce1779_2|654270|organism=Nannochloropsis oceanica|type=mRNA|length=1631bp
GCTTCAGAGCTTGATAAGGCGATTGTCTGATCGAACTCGGAAACAGCGAG
CCACCCCCCCATCTCCCATCATCTTAGAAAGCTAGACGCCCTTGCCCCTC
CCTCCCTGCTCCTGTCTATGTCTACATGAGGTCTCTGTTGATAACTTCCA
CCTAAATTTTCTCGTGTCGGTGTGGCCAGGTTTGCCGCATACATGGGAAT
GCACGGTCCGCCCAGAGAGGAGCGAGGAAGCTTCTCCTCCATCGCCCGCG
CTCACGACACACACCACCATCATTCGTCCACAACACAACACAGGCACACC
GCGCAGTAATGGCGGACGAGGACGATTGGGGGCCGGCTCCTTTGCCTGAC
TTTAATAGACTCCATTTAGGGGGCCGGGATGCGCCTGCGACGAGTGGCAG
CACAGCAGCGTCGGAAGCGGAAGTGGGCGGGGTGGGTGACGGTTTGTCCT
CGGCGGGCACAGTGGCAGTCACGTCGGCAGAAGACGACGCGGCGATCGAT
CCAGTCCTGACGGGAGCTATGGAGAGCCCTCGGGAACGCGTGAATGTGCT
AAAATACGAGGATGCTATGGTACAGTTCATGAAGGCCGGGACTAAGCAGC
AGTTGCTGGAATTGTCCCCTAGCTCGTCTTACCACCGCCTTCTGCTCTAC
CGCCTCGCCCAGCGCTTTGGCCTGGAGCACGCTTCCGGGGAAGCCGAGGG
TGGTGGCGTAGGGATGGAACCCAGCATGAACCGGACCCTCGTGCTTTTCA
AGGCACCGCAAAGCTTTATGCCCCGCCTTCTACTGATTGACACGTGCGGA
AAGAAAGGCACGAATGATGCAAGTGGGGGGAGGGACGGAGGTGCCAAGGC
CCCCGTGATGAGGCTGATGCGACGGAGTCGGCCGGCCGAGGGCAAGCAGG
GAGGAGGCAGAAACATATTACAATGTAACGGTAATGGTGAGGAAAAATTC
CCATCCACGGCCAATGGATGCAAGAGTATGACAGACAGGGAGAAGGCGTA
CGCCGAGGCACGAGCTCGCATTTTTGGTGCCCCATCTGAGTCTGCATCAT
CCTCGTCCACCTCTACCAGCAGCGCAGTCAGCATCTCCTCCTCCTCCTCG
TGTCCTCTCTCAGGTGGGGGCTTGAAAGGCGGCAAGGGCGTGCAAGCAAC
TGGACCTGATACCTTGGGTGGATTTGGAGCCGGGCGGGGCAAGTTCATGG
CGGCGCTGTCGGGAGACCGTCGGTCGAGCACTCCACCTCAATCCTCCGAG
CAGCGGCAGTGGCTTGAGGATGGGCAGAAAAGAAGCGGCAGGGGTGGAGG
GGGCGAGGGGGACGGGGACGGGGGAGAAGGAGGAGGAGGTGGCGCGAAAG
GGGAATGGAGCGAGAGCAAGGTGCTGTGGCGGAACCGCGAGGCCGAAAAG
AGCGACCCGGATTTTCTCCGGCATCCTCGTCCGCGCGGGTTGCCACCTGG
TGGAGGGATGATGTGCGCGTTCTCAAGAGGGGGAGGAGGGGGAGGAGGGG
GAATGTACGGTACCATGTCTGGTCCTCCTCCAGCCTTCAACAGCTTACCT
CCCCCTCCAGGTGCTCCTCCCGGCGCCTTCTACGTGGACCATTACATGCA
GCAACAGATGAGAATACCAGAAAAATGTTAG

protein sequence of jgi.p|Nanoce1779_2|654270

>mRNA_7713-protein ID=mRNA_7713-protein|Name=jgi.p|Nanoce1779_2|654270|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MADEDDWGPAPLPDFNRLHLGGRDAPATSGSTAASEAEVGGVGDGLSSAG
TVAVTSAEDDAAIDPVLTGAMESPRERVNVLKYEDAMVQFMKAGTKQQLL
ELSPSSSYHRLLLYRLAQRFGLEHASGEAEGGGVGMEPSMNRTLVLFKAP
QSFMPRLLLIDTCGKKGTNDASGGRDGGAKAPVMRLMRRSRPAEGKQGGG
RNILQCNGNGEEKFPSTANGCKSMTDREKAYAEARARIFGAPSESASSSS
TSTSSAVSISSSSSCPLSGGGLKGGKGVQATGPDTLGGFGAGRGKFMAAL
SGDRRSSTPPQSSEQRQWLEDGQKRSGRGGGGEGDGDGGEGGGGGAKGEW
SESKVLWRNREAEKSDPDFLRHPRPRGLPPGGGMMCAFSRGGGGGGGGMY
GTMSGPPPAFNSLPPPPGAPPGAFYVDHYMQQQMRIPEKC*

mRNA from alignment at scaffold_21:146972..149482+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7713 ID=mRNA_7713|Name=jgi.p|Nanoce1779_2|654270|organism=Nannochloropsis oceanica|type=mRNA|length=2511bp|location=Sequence derived from alignment at scaffold_21:146972..149482+ (Nannochloropsis oceanica)
GCTTCAGAGCTTGATAAGGCGATTGTCTGATCGAACTCGGAAACAGCGAG
CCACCCCCCCATCTCCCATCATCTTAGAAAGCTAGACGCCCTTGCCCCTC
CCTCCCTGCTCCTGTCTATGTCTACATGAGGTCTCTGTTGATAACTTCCA
CCTAAATTTTCTCGTGTCGGTGTGGCCAGGTTTGCCGCATACATGGGAAT
GCACGGTCCGCCCAGAGAGGAGCGAGGAAGCTTCTCCTCCATCGCCCGCG
CTCACGACACACACCACCATCATTCGTCCACAACACAACACAGGCACACC
GCGCAGTAATGGCGGACGAGGACGATTGGGGGCCGGCTCCTTTGCCTGAC
TTTAATAGACTCCATTTAGGGGGCCGGGTAAGAAGTGGCGAGGGACGGAG
GGATGGAGGAGAGGAGGAGAATGTAGATATGTACGATTCCCAATGCCTCG
AGAAGCGCTACATCCTCGTTCAACTTTATTCACACCACTGTAAAAGGATG
CGCCTGCGACGAGTGGCAGCACAGCAGCGTCGGAAGCGGAAGTGGGCGGG
GTGGGTGACGGTTTGTCCTCGGCGGGCACAGTGGCAGTCACGTCGGCAGA
AGACGACGCGGCGATCGATCCAGTCCTGACGGGAGCTATGGAGAGCCCTC
GGGAACGCGTGAATGTGCTAAAATACGAGGATGCTATGGTACAGTTCATG
AAGGCCGGGACTAAGCAGCAGTTGCTGGAATTGTCCCCTAGCTCGTCTTA
CCACCGCCTTCTGCTCTACCGCCTCGCCCAGCGCTTTGGCCTGGAGCACG
CTTCCGGGGAAGCCGAGGGTGGTGGCGTAGGGATGGAACCCAGCATGAAC
CGGACCCTCGTGCTTTTCAAGGCACCGCAAAGCTTTATGCCCCGCCTTCT
ACTGATTGACACGTGCGGAAAGAAAGGCACGAATGATGCAAGTGGGGGGA
GGGACGGAGGTGCCAAGGCCCCCGTGATGAGGCTGATGCGACGGAGTCGG
CCGGCCGAGGGCAAGCAGGGAGGAGGCAGAAACATATTACAATGTAACGG
TAATGGTGAGGAAAAATTCCCATCCACGGCCAATGGATGCAAGAGTATGA
CAGACAGGGAGAAGGCGTACGCCGAGGCACGAGCTCGCATTTTTGGTGCC
CCATCTGAGTCTGCATCATCCTCGTCCACCTCTACCAGCAGCGCAGTCAG
CATCTCCTCCTCCTCCTCGTGTCCTCTCTCAGGTGGGGGCTTGAAAGGCG
GCAAGGGCGTGCAAGCAACTGGACCTGATACCTTGGGTGGATTTGGAGCC
GGGCGGGGCAAGTTCATGGCGGCGCTGTCGGGAGACCGTCGGTCGAGCAC
TCCACCTCAATCCTCCGAGCAGCGGCAGTGGCTTGAGGATGGGCAGAAAA
GAAGCGGCAGGGGTGGAGGGGGCGAGGGGGACGGGGACGGGGGAGAAGGA
GGAGGAGGTGGCGCGAAAGGGGAATGGAGCGAGAGCAAGGTGCTGTGGCG
GAACCGCGAGGCCGAAAAGAGCGACCCGGATTTTCTCCGGCATCCTCGTC
CGCGCGGGTTGCCACCTGGTGGAGGGATGATGTGCGCGTTCTCAAGAGGG
GGAGGAGGGGGAGGAGGGGGAATGTACGGTACCATGTCTGGTCCTCCTCC
AGCCTTCAACAGCTTACCTCCCCCTCCAGGTGCTCCTCCCGGCGCCTTCT
ACGTGGACCATTACATGCAGCAACAGGTGATGCAGCAGCATATGGCCGCC
ATATATCACCACCATCACTACCACCATCAGCAACAGCAGCAGTACCACCC
GCACCACCAGCAGGCGCCGTTTCCGTCTTCATCGATTTTTCCGCAAGGTT
ACTACAACGATCCACGGTATGCCTCGTATTCTTACCAAGGAGGGGGAGAA
GGAGATGGGCCAGAAAGAGGTGGAGGAATCGAAGAACGGGGGATGTGGGG
GCGGGGAAGAGGGATGGGAAGAGGTGGAATTTTTGTGGGGAGGCCATTGC
CGTCGTCCCACTCGAGAGGAGGAAGCTCTGGGAACGACACTGACCAGAGA
TGTGTGGAGGAGGACTTTCCGCCGTTAGGTAGATAGGTAGAGCATATGAA
ACAGAGGGTATATGCTCAAAGGAACGAAAAACGAAACACGCAATAACTGA
AGGTTGTCTCTCTTGTTGGCTTGCCGTCGTTCCTTTTCCTCTTGTGTGTT
GACCACGCTCGTTTGTCAATGATGGGTTTTCAGATTGCTCACTCTCCGTT
CTTTTTCCAGTTTTCAACTTGGGCGTTGGGACAATCTCTCTCATATATTC
ACACACACGACAGGTCACTCATGAATGGCAGGAAACACGTCCGATTTAAT
TTCATACGTGTGATGAGAGGTCCCTCAACATAGAATTATGAACAAGGAGA
AGTACAAGGTGTTGGTGCGTCCCTCTCTTGTCAGGAATTGAAATACACCT
TTTCTCACCATCCCACGTCCACTCATTCAACTGATAGATGAGAATACCAG
AAAAATGTTAG

Coding sequence (CDS) from alignment at scaffold_21:146972..149482+

>mRNA_7713 ID=mRNA_7713|Name=jgi.p|Nanoce1779_2|654270|organism=Nannochloropsis oceanica|type=CDS|length=3969bp|location=Sequence derived from alignment at scaffold_21:146972..149482+ (Nannochloropsis oceanica)
ATGGCGGACGAGGACGATTGGGGGCCGGCTCCTTTGCCTGACTTTAATAG
ACTCCATTTAGGGGGCCGGGATGCGCCTGCGACGAGTGGCAGCACAGCAG
CGTCGGAAGCGGAAGTGGGCGGGGTGGGTGACGGTTTGTCCTCGGCGGGC
ACAGTGGCAGTCACGTCGGCAGAAGACGACGCGGCGATCGATCCAGTCCT
GACGGGAGCTATGGAGAGCCCTCGGGAACGCGTGAATGTGCTAAAATACG
AGGATGCTATGGTACAGTTCATGAAGGCCGGGACTAAGCAGCAGTTGCTG
GAATTGTCCCCTAGCTCGTCTTACCACCGCCTTCTGCTCTACCGCCTCGC
CCAGCGCTTTGGCCTGGAGCACGCTTCCGGGGAAGCCGAGGGTGGTGGCG
TAGGGATGGAACCCAGCATGAACCGGACCCTCGTGCTTTTCAAGGCACCG
CAAAGCTTTATGCCCCGCCTTCTACTGATTGACACGTGCGGAAAGAAAGG
CACGAATGATGCAAGTGGGGGGAGGGACGGAGGTGCCAAGGCCCCCGTGA
TGAGGCTGATGCGACGGAGTCGGCCGGCCGAGGGCAAGCAGGGAGGAGGC
AGAAACATATTACAATGTAACGGTAATGGTGAGGAAAAATTCCCATCCAC
GGCCAATGGATGCAAGAGTATGACAGACAGGGAGAAGGCGTACGCCGAGG
CACGAGCTCGCATTTTTGGTGCCCCATCTGAGTCTGCATCATCCTCGTCC
ACCTCTACCAGCAGCGCAGTCAGCATCTCCTCCTCCTCCTCGTGTCCTCT
CTCAGGTGGGGGCTTGAAAGGCGGCAAGGGCGTGCAAGCAACTGGACCTG
ATACCTTGGGTGGATTTGGAGCCGGGCGGGGCAAGTTCATGGCGGCGCTG
TCGGGAGACCGTCGGTCGAGCACTCCACCTCAATCCTCCGAGCAGCGGCA
GTGGCTTGAGGATGGGCAGAAAAGAAGCGGCAGGGGTGGAGGGGGCGAGG
GGGACGGGGACGGGGGAGAAGGAGGAGGAGGTGGCGCGAAAGGGGAATGG
AGCGAGAGCAAGGTGCTGTGGCGGAACCGCGAGGCCGAAAAGAGCGACCC
GGATTTTCTCCGGCATCCTCGTCCGCGCGGGTTGCCACCTGGTGGAGGGA
TGATGTGCGCGTTCTCAAGAGGGGGAGGAGGGGGAGGAGGGGGAATGTAC
GGTACCATGTCTGGTCCTCCTCCAGCCTTCAACAGCTTACCTCCCCCTCC
AGGTGCTCCTCCCGGCGCCTTCTACGTGGACCATTACATGCAGCAACAGA
TGAGAATACCAGAAAAATGTTAGATGGCGGACGAGGACGATTGGGGGCCG
GCTCCTTTGCCTGACTTTAATAGACTCCATTTAGGGGGCCGGGATGCGCC
TGCGACGAGTGGCAGCACAGCAGCGTCGGAAGCGGAAGTGGGCGGGGTGG
GTGACGGTTTGTCCTCGGCGGGCACAGTGGCAGTCACGTCGGCAGAAGAC
GACGCGGCGATCGATCCAGTCCTGACGGGAGCTATGGAGAGCCCTCGGGA
ACGCGTGAATGTGCTAAAATACGAGGATGCTATGGTACAGTTCATGAAGG
CCGGGACTAAGCAGCAGTTGCTGGAATTGTCCCCTAGCTCGTCTTACCAC
CGCCTTCTGCTCTACCGCCTCGCCCAGCGCTTTGGCCTGGAGCACGCTTC
CGGGGAAGCCGAGGGTGGTGGCGTAGGGATGGAACCCAGCATGAACCGGA
CCCTCGTGCTTTTCAAGGCACCGCAAAGCTTTATGCCCCGCCTTCTACTG
ATTGACACGTGCGGAAAGAAAGGCACGAATGATGCAAGTGGGGGGAGGGA
CGGAGGTGCCAAGGCCCCCGTGATGAGGCTGATGCGACGGAGTCGGCCGG
CCGAGGGCAAGCAGGGAGGAGGCAGAAACATATTACAATGTAACGGTAAT
GGTGAGGAAAAATTCCCATCCACGGCCAATGGATGCAAGAGTATGACAGA
CAGGGAGAAGGCGTACGCCGAGGCACGAGCTCGCATTTTTGGTGCCCCAT
CTGAGTCTGCATCATCCTCGTCCACCTCTACCAGCAGCGCAGTCAGCATC
TCCTCCTCCTCCTCGTGTCCTCTCTCAGGTGGGGGCTTGAAAGGCGGCAA
GGGCGTGCAAGCAACTGGACCTGATACCTTGGGTGGATTTGGAGCCGGGC
GGGGCAAGTTCATGGCGGCGCTGTCGGGAGACCGTCGGTCGAGCACTCCA
CCTCAATCCTCCGAGCAGCGGCAGTGGCTTGAGGATGGGCAGAAAAGAAG
CGGCAGGGGTGGAGGGGGCGAGGGGGACGGGGACGGGGGAGAAGGAGGAG
GAGGTGGCGCGAAAGGGGAATGGAGCGAGAGCAAGGTGCTGTGGCGGAAC
CGCGAGGCCGAAAAGAGCGACCCGGATTTTCTCCGGCATCCTCGTCCGCG
CGGGTTGCCACCTGGTGGAGGGATGATGTGCGCGTTCTCAAGAGGGGGAG
GAGGGGGAGGAGGGGGAATGTACGGTACCATGTCTGGTCCTCCTCCAGCC
TTCAACAGCTTACCTCCCCCTCCAGGTGCTCCTCCCGGCGCCTTCTACGT
GGACCATTACATGCAGCAACAGATGAGAATACCAGAAAAATGTTAGATGG
CGGACGAGGACGATTGGGGGCCGGCTCCTTTGCCTGACTTTAATAGACTC
CATTTAGGGGGCCGGGATGCGCCTGCGACGAGTGGCAGCACAGCAGCGTC
GGAAGCGGAAGTGGGCGGGGTGGGTGACGGTTTGTCCTCGGCGGGCACAG
TGGCAGTCACGTCGGCAGAAGACGACGCGGCGATCGATCCAGTCCTGACG
GGAGCTATGGAGAGCCCTCGGGAACGCGTGAATGTGCTAAAATACGAGGA
TGCTATGGTACAGTTCATGAAGGCCGGGACTAAGCAGCAGTTGCTGGAAT
TGTCCCCTAGCTCGTCTTACCACCGCCTTCTGCTCTACCGCCTCGCCCAG
CGCTTTGGCCTGGAGCACGCTTCCGGGGAAGCCGAGGGTGGTGGCGTAGG
GATGGAACCCAGCATGAACCGGACCCTCGTGCTTTTCAAGGCACCGCAAA
GCTTTATGCCCCGCCTTCTACTGATTGACACGTGCGGAAAGAAAGGCACG
AATGATGCAAGTGGGGGGAGGGACGGAGGTGCCAAGGCCCCCGTGATGAG
GCTGATGCGACGGAGTCGGCCGGCCGAGGGCAAGCAGGGAGGAGGCAGAA
ACATATTACAATGTAACGGTAATGGTGAGGAAAAATTCCCATCCACGGCC
AATGGATGCAAGAGTATGACAGACAGGGAGAAGGCGTACGCCGAGGCACG
AGCTCGCATTTTTGGTGCCCCATCTGAGTCTGCATCATCCTCGTCCACCT
CTACCAGCAGCGCAGTCAGCATCTCCTCCTCCTCCTCGTGTCCTCTCTCA
GGTGGGGGCTTGAAAGGCGGCAAGGGCGTGCAAGCAACTGGACCTGATAC
CTTGGGTGGATTTGGAGCCGGGCGGGGCAAGTTCATGGCGGCGCTGTCGG
GAGACCGTCGGTCGAGCACTCCACCTCAATCCTCCGAGCAGCGGCAGTGG
CTTGAGGATGGGCAGAAAAGAAGCGGCAGGGGTGGAGGGGGCGAGGGGGA
CGGGGACGGGGGAGAAGGAGGAGGAGGTGGCGCGAAAGGGGAATGGAGCG
AGAGCAAGGTGCTGTGGCGGAACCGCGAGGCCGAAAAGAGCGACCCGGAT
TTTCTCCGGCATCCTCGTCCGCGCGGGTTGCCACCTGGTGGAGGGATGAT
GTGCGCGTTCTCAAGAGGGGGAGGAGGGGGAGGAGGGGGAATGTACGGTA
CCATGTCTGGTCCTCCTCCAGCCTTCAACAGCTTACCTCCCCCTCCAGGT
GCTCCTCCCGGCGCCTTCTACGTGGACCATTACATGCAGCAACAGATGAG
AATACCAGAAAAATGTTAG

Synonyms

Publications