jgi.p|Nanoce1779_2|599743, mRNA_7712 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599743
Unique Name	mRNA_7712
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2607
Alignment location	scaffold_21:144219..146825 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599829
Track	FilteredModels2
ProteinId	599743

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:144219..146825 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599743	gene_7712	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599743	mRNA_7712-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7712	CDS_7712	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:144219..146825-
coding sequence from alignment at scaffold_21:144219..146825-

mRNA sequence

>mRNA_7712 ID=mRNA_7712|Name=jgi.p|Nanoce1779_2|599743|organism=Nannochloropsis oceanica|type=mRNA|length=2607bp
CCGTCAACATCCCTTCACGCACGGCAACCATGCCGCGCATGCAGCTCCTG
GGACGGCACTACCATATTGCCAGTGACGCCATGACGGTTCCGGCGTTTTG
CATGGCGTTGGGGCGGCTGGTGTGGTCAGCCGTAGTGCTAGGCTTGTTCA
TGCACCTGCAGTACTTGCTGGAGTCATGCTCCCGGCCCGGCGTCGTCGAC
AGCTTTGTCGGAATTTCCATTATACTCTTCTTGGTCATGGTACTGGTGGA
GCTGGCCATCGTGGCGGCCTCACAGCGCGGATCTATCGTTCACACCCAGT
CTCGCAAAGCCGTGGGTCTGCTGGTGGTGGTGCATACGTGCATGGGGGGC
GTACAGTTGATTGTTGCGATGCTGGGCCTGGCCATCCTCTCCGACCCCAA
GCATCTGGTTATGTGTGATTCCATGACCTTGCAGAACCGGGTGGACTTGA
TCGTGGCCCTGATTGCCATTTCGCAATTGGCCGACGTGTCGATGAAGGCC
TGCTGCTGCGCCATGCTGGTTGGGCAGCCGGTGGGCGAGGAGCAGGAGCA
CCCCTTGCGACACTTCGAACACCATGAGTCCCTCGTCTCCTATTCCATCG
CCGAGGATCGATGGCGGGGTCGTTGCAGCTTCCTGTGTACCTGCCTTAGG
TATACGACGTGCCACCTTCTGTCGAGCGGGGCGGCCTCGGGACCAGAAGC
GGGGAACATGGGGGATATGGAGGTGGTGGCGCGGGTCATGGCCGACCTGT
TCCACTCAGAGGGGTTTCTAGACGTCTTGCCGTCGGACATTTTGGCAGGA
TTTGTCCTATTACGGCACGTCCAGAAGGCGCAGGAGCATGAGATGGTCTC
AAGACGTGACTCCGAGCTTTTGGACGCAGAGGAGCGCGTGTTGATGCAGC
AGCTGGAGGAGGGAGGCACAGCTGCAGCTGCTGCTGAAACTGCCACGACG
ACCATGTCCGGAACAGGAGCGTCAGGGACGTCCACCGGCCCGGGGATGAA
CCCACGGATCCGCTTTCAATGCGGCCACTACTTGGTGAAGAATGCCTTGT
CGCGGGAAGACCCTGAAGATCGGAACGTGCTGGAGGAGGGGACGCACTTC
GAGGCCTACGCCCTTGCCTTGTATACCTGGATGATGTACGCCTACGCCAA
GACCCCCTGCTACGCTTTCCCCGCCCTTGGGGCCCGACGGCTATTTCGGA
TGCCGCATGGGACACGATCGAATGTGCACGGGGACATCGGGGCAGTGCTG
GGCGACAACTGGTTTCGCGCCCATGAGGCAGGCCTGTGGGAGTGGCTGAA
GGGTCGGGAAGGCTGTGAGTTGGCTTATGCCACCTTCATCAACACTCTAT
ACGAGCGGCCGTACGCGATTTTTGTTGATCACAAATGGCAGTGTGTGGTG
GTGGCCATCCGTGGGACCTTGTCCTTGGAGGATCTCTTGAACGATGCCCA
CGCCGAGCCCGGGCCGCTGGACGCCATGGGGCAGGCGTGGGGCTTCCCGG
GGGAAGGAGAGCACGGGCACGTAGGTATGGCGAATGCGGCTGATTGCATT
GCCAAAGACTTGTACAAGCACCAGATTCTGCACCGCCTCATCCAACGGGA
CCGATCGGATTCCCCTCCAGCGAGCCCGCACACGCCTTTGACCAAGTCGA
GCAAGGGGTATAGGCTGCGGATCGTGGGCCATTCTCTGGGGGCGGGCGCC
GCCGTCTTCCTTTCGCTTATGCTCCAACGCGATTTTCCTGACCTTCGTTG
CCTTGCTTATTGTACACCTGGCGGACTTTTGTCTCAGCGGTTGGCCGAGT
ATACCAAGCCTTTTACGCTCACCTTCGTCTTGGGTCGTGACTTGGTGCCG
CGTCTGACACTTGATGCTGTCCGCGGACTTCGGGACGACATCCTCCGTCT
CCTTGCCCGTTGCCGGGCCAATAAGAATACGGTGCTGCGGAGCGTGATGG
ATAAGGACTCACGAGCCGCCGTGGAACGATTGCTGTACCCCTCGCAGGAA
GTCCCGCCCTCGGATTTCTTGACGCAGCTGCGAGCGTATGAAGAGCAAAT
GCGACAAGTCGATCGACGGATGGCTCAAGTGAGGATGGTGCCCCCCGGGC
AGATTATCCATTTTGTTAAGTCTCATAAGATGCCACGGGAGGGCTGGATG
TGTGGCGGAGGAGGGACCAAGCAATTCTACACCCCAGTGTGGGCGGTGCC
CGAGGATTTGAGTGAGATCTACGTATCGTCAACGATGGCCTCGGAGCATT
TCCCCCATATTTTGTTGGAGAATATGCAGAATGTCTGTGCGGAGTGGGAG
ATTGCCAGCACCTAGAACCTGCGTATCTCTGACCTGAGCTGGCGACTAAA
GGACGACAGAACAGAGAGTGAGCCTTGTGGAGAGGGAGGGACGGATAGCC
AAGAGGCACACTAGGTCAAGACATTTGATGGCAATTAGCTCTGCATATTG
AGAAGGGAAAATGACGGGATGCCACAAACGGAATCTAAAGAACGCATTGT
GCATATGTGAAGGACCTCAATGAGACATGATGGCTGCAGAAAAATCCAAA
AACGGGCCTCTCACGCCAGCTAACACTGAAGAAACAAGTAATTAAGATAA
GGAAAAG

protein sequence of jgi.p|Nanoce1779_2|599743

>mRNA_7712-protein ID=mRNA_7712-protein|Name=jgi.p|Nanoce1779_2|599743|organism=Nannochloropsis oceanica|type=polypeptide|length=762bp
MPRMQLLGRHYHIASDAMTVPAFCMALGRLVWSAVVLGLFMHLQYLLESC
SRPGVVDSFVGISIILFLVMVLVELAIVAASQRGSIVHTQSRKAVGLLVV
VHTCMGGVQLIVAMLGLAILSDPKHLVMCDSMTLQNRVDLIVALIAISQL
ADVSMKACCCAMLVGQPVGEEQEHPLRHFEHHESLVSYSIAEDRWRGRCS
FLCTCLRYTTCHLLSSGAASGPEAGNMGDMEVVARVMADLFHSEGFLDVL
PSDILAGFVLLRHVQKAQEHEMVSRRDSELLDAEERVLMQQLEEGGTAAA
AAETATTTMSGTGASGTSTGPGMNPRIRFQCGHYLVKNALSREDPEDRNV
LEEGTHFEAYALALYTWMMYAYAKTPCYAFPALGARRLFRMPHGTRSNVH
GDIGAVLGDNWFRAHEAGLWEWLKGREGCELAYATFINTLYERPYAIFVD
HKWQCVVVAIRGTLSLEDLLNDAHAEPGPLDAMGQAWGFPGEGEHGHVGM
ANAADCIAKDLYKHQILHRLIQRDRSDSPPASPHTPLTKSSKGYRLRIVG
HSLGAGAAVFLSLMLQRDFPDLRCLAYCTPGGLLSQRLAEYTKPFTLTFV
LGRDLVPRLTLDAVRGLRDDILRLLARCRANKNTVLRSVMDKDSRAAVER
LLYPSQEVPPSDFLTQLRAYEEQMRQVDRRMAQVRMVPPGQIIHFVKSHK
MPREGWMCGGGGTKQFYTPVWAVPEDLSEIYVSSTMASEHFPHILLENMQ
NVCAEWEIAST*

mRNA from alignment at scaffold_21:144219..146825-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7712 ID=mRNA_7712|Name=jgi.p|Nanoce1779_2|599743|organism=Nannochloropsis oceanica|type=mRNA|length=2607bp|location=Sequence derived from alignment at scaffold_21:144219..146825- (Nannochloropsis oceanica)
CCGTCAACATCCCTTCACGCACGGCAACCATGCCGCGCATGCAGCTCCTG
GGACGGCACTACCATATTGCCAGTGACGCCATGACGGTTCCGGCGTTTTG
CATGGCGTTGGGGCGGCTGGTGTGGTCAGCCGTAGTGCTAGGCTTGTTCA
TGCACCTGCAGTACTTGCTGGAGTCATGCTCCCGGCCCGGCGTCGTCGAC
AGCTTTGTCGGAATTTCCATTATACTCTTCTTGGTCATGGTACTGGTGGA
GCTGGCCATCGTGGCGGCCTCACAGCGCGGATCTATCGTTCACACCCAGT
CTCGCAAAGCCGTGGGTCTGCTGGTGGTGGTGCATACGTGCATGGGGGGC
GTACAGTTGATTGTTGCGATGCTGGGCCTGGCCATCCTCTCCGACCCCAA
GCATCTGGTTATGTGTGATTCCATGACCTTGCAGAACCGGGTGGACTTGA
TCGTGGCCCTGATTGCCATTTCGCAATTGGCCGACGTGTCGATGAAGGCC
TGCTGCTGCGCCATGCTGGTTGGGCAGCCGGTGGGCGAGGAGCAGGAGCA
CCCCTTGCGACACTTCGAACACCATGAGTCCCTCGTCTCCTATTCCATCG
CCGAGGATCGATGGCGGGGTCGTTGCAGCTTCCTGTGTACCTGCCTTAGG
TATACGACGTGCCACCTTCTGTCGAGCGGGGCGGCCTCGGGACCAGAAGC
GGGGAACATGGGGGATATGGAGGTGGTGGCGCGGGTCATGGCCGACCTGT
TCCACTCAGAGGGGTTTCTAGACGTCTTGCCGTCGGACATTTTGGCAGGA
TTTGTCCTATTACGGCACGTCCAGAAGGCGCAGGAGCATGAGATGGTCTC
AAGACGTGACTCCGAGCTTTTGGACGCAGAGGAGCGCGTGTTGATGCAGC
AGCTGGAGGAGGGAGGCACAGCTGCAGCTGCTGCTGAAACTGCCACGACG
ACCATGTCCGGAACAGGAGCGTCAGGGACGTCCACCGGCCCGGGGATGAA
CCCACGGATCCGCTTTCAATGCGGCCACTACTTGGTGAAGAATGCCTTGT
CGCGGGAAGACCCTGAAGATCGGAACGTGCTGGAGGAGGGGACGCACTTC
GAGGCCTACGCCCTTGCCTTGTATACCTGGATGATGTACGCCTACGCCAA
GACCCCCTGCTACGCTTTCCCCGCCCTTGGGGCCCGACGGCTATTTCGGA
TGCCGCATGGGACACGATCGAATGTGCACGGGGACATCGGGGCAGTGCTG
GGCGACAACTGGTTTCGCGCCCATGAGGCAGGCCTGTGGGAGTGGCTGAA
GGGTCGGGAAGGCTGTGAGTTGGCTTATGCCACCTTCATCAACACTCTAT
ACGAGCGGCCGTACGCGATTTTTGTTGATCACAAATGGCAGTGTGTGGTG
GTGGCCATCCGTGGGACCTTGTCCTTGGAGGATCTCTTGAACGATGCCCA
CGCCGAGCCCGGGCCGCTGGACGCCATGGGGCAGGCGTGGGGCTTCCCGG
GGGAAGGAGAGCACGGGCACGTAGGTATGGCGAATGCGGCTGATTGCATT
GCCAAAGACTTGTACAAGCACCAGATTCTGCACCGCCTCATCCAACGGGA
CCGATCGGATTCCCCTCCAGCGAGCCCGCACACGCCTTTGACCAAGTCGA
GCAAGGGGTATAGGCTGCGGATCGTGGGCCATTCTCTGGGGGCGGGCGCC
GCCGTCTTCCTTTCGCTTATGCTCCAACGCGATTTTCCTGACCTTCGTTG
CCTTGCTTATTGTACACCTGGCGGACTTTTGTCTCAGCGGTTGGCCGAGT
ATACCAAGCCTTTTACGCTCACCTTCGTCTTGGGTCGTGACTTGGTGCCG
CGTCTGACACTTGATGCTGTCCGCGGACTTCGGGACGACATCCTCCGTCT
CCTTGCCCGTTGCCGGGCCAATAAGAATACGGTGCTGCGGAGCGTGATGG
ATAAGGACTCACGAGCCGCCGTGGAACGATTGCTGTACCCCTCGCAGGAA
GTCCCGCCCTCGGATTTCTTGACGCAGCTGCGAGCGTATGAAGAGCAAAT
GCGACAAGTCGATCGACGGATGGCTCAAGTGAGGATGGTGCCCCCCGGGC
AGATTATCCATTTTGTTAAGTCTCATAAGATGCCACGGGAGGGCTGGATG
TGTGGCGGAGGAGGGACCAAGCAATTCTACACCCCAGTGTGGGCGGTGCC
CGAGGATTTGAGTGAGATCTACGTATCGTCAACGATGGCCTCGGAGCATT
TCCCCCATATTTTGTTGGAGAATATGCAGAATGTCTGTGCGGAGTGGGAG
ATTGCCAGCACCTAGAACCTGCGTATCTCTGACCTGAGCTGGCGACTAAA
GGACGACAGAACAGAGAGTGAGCCTTGTGGAGAGGGAGGGACGGATAGCC
AAGAGGCACACTAGGTCAAGACATTTGATGGCAATTAGCTCTGCATATTG
AGAAGGGAAAATGACGGGATGCCACAAACGGAATCTAAAGAACGCATTGT
GCATATGTGAAGGACCTCAATGAGACATGATGGCTGCAGAAAAATCCAAA
AACGGGCCTCTCACGCCAGCTAACACTGAAGAAACAAGTAATTAAGATAA
GGAAAAG

Coding sequence (CDS) from alignment at scaffold_21:144219..146825-

>mRNA_7712 ID=mRNA_7712|Name=jgi.p|Nanoce1779_2|599743|organism=Nannochloropsis oceanica|type=CDS|length=2286bp|location=Sequence derived from alignment at scaffold_21:144219..146825- (Nannochloropsis oceanica)
ATGCCGCGCATGCAGCTCCTGGGACGGCACTACCATATTGCCAGTGACGC
CATGACGGTTCCGGCGTTTTGCATGGCGTTGGGGCGGCTGGTGTGGTCAG
CCGTAGTGCTAGGCTTGTTCATGCACCTGCAGTACTTGCTGGAGTCATGC
TCCCGGCCCGGCGTCGTCGACAGCTTTGTCGGAATTTCCATTATACTCTT
CTTGGTCATGGTACTGGTGGAGCTGGCCATCGTGGCGGCCTCACAGCGCG
GATCTATCGTTCACACCCAGTCTCGCAAAGCCGTGGGTCTGCTGGTGGTG
GTGCATACGTGCATGGGGGGCGTACAGTTGATTGTTGCGATGCTGGGCCT
GGCCATCCTCTCCGACCCCAAGCATCTGGTTATGTGTGATTCCATGACCT
TGCAGAACCGGGTGGACTTGATCGTGGCCCTGATTGCCATTTCGCAATTG
GCCGACGTGTCGATGAAGGCCTGCTGCTGCGCCATGCTGGTTGGGCAGCC
GGTGGGCGAGGAGCAGGAGCACCCCTTGCGACACTTCGAACACCATGAGT
CCCTCGTCTCCTATTCCATCGCCGAGGATCGATGGCGGGGTCGTTGCAGC
TTCCTGTGTACCTGCCTTAGGTATACGACGTGCCACCTTCTGTCGAGCGG
GGCGGCCTCGGGACCAGAAGCGGGGAACATGGGGGATATGGAGGTGGTGG
CGCGGGTCATGGCCGACCTGTTCCACTCAGAGGGGTTTCTAGACGTCTTG
CCGTCGGACATTTTGGCAGGATTTGTCCTATTACGGCACGTCCAGAAGGC
GCAGGAGCATGAGATGGTCTCAAGACGTGACTCCGAGCTTTTGGACGCAG
AGGAGCGCGTGTTGATGCAGCAGCTGGAGGAGGGAGGCACAGCTGCAGCT
GCTGCTGAAACTGCCACGACGACCATGTCCGGAACAGGAGCGTCAGGGAC
GTCCACCGGCCCGGGGATGAACCCACGGATCCGCTTTCAATGCGGCCACT
ACTTGGTGAAGAATGCCTTGTCGCGGGAAGACCCTGAAGATCGGAACGTG
CTGGAGGAGGGGACGCACTTCGAGGCCTACGCCCTTGCCTTGTATACCTG
GATGATGTACGCCTACGCCAAGACCCCCTGCTACGCTTTCCCCGCCCTTG
GGGCCCGACGGCTATTTCGGATGCCGCATGGGACACGATCGAATGTGCAC
GGGGACATCGGGGCAGTGCTGGGCGACAACTGGTTTCGCGCCCATGAGGC
AGGCCTGTGGGAGTGGCTGAAGGGTCGGGAAGGCTGTGAGTTGGCTTATG
CCACCTTCATCAACACTCTATACGAGCGGCCGTACGCGATTTTTGTTGAT
CACAAATGGCAGTGTGTGGTGGTGGCCATCCGTGGGACCTTGTCCTTGGA
GGATCTCTTGAACGATGCCCACGCCGAGCCCGGGCCGCTGGACGCCATGG
GGCAGGCGTGGGGCTTCCCGGGGGAAGGAGAGCACGGGCACGTAGGTATG
GCGAATGCGGCTGATTGCATTGCCAAAGACTTGTACAAGCACCAGATTCT
GCACCGCCTCATCCAACGGGACCGATCGGATTCCCCTCCAGCGAGCCCGC
ACACGCCTTTGACCAAGTCGAGCAAGGGGTATAGGCTGCGGATCGTGGGC
CATTCTCTGGGGGCGGGCGCCGCCGTCTTCCTTTCGCTTATGCTCCAACG
CGATTTTCCTGACCTTCGTTGCCTTGCTTATTGTACACCTGGCGGACTTT
TGTCTCAGCGGTTGGCCGAGTATACCAAGCCTTTTACGCTCACCTTCGTC
TTGGGTCGTGACTTGGTGCCGCGTCTGACACTTGATGCTGTCCGCGGACT
TCGGGACGACATCCTCCGTCTCCTTGCCCGTTGCCGGGCCAATAAGAATA
CGGTGCTGCGGAGCGTGATGGATAAGGACTCACGAGCCGCCGTGGAACGA
TTGCTGTACCCCTCGCAGGAAGTCCCGCCCTCGGATTTCTTGACGCAGCT
GCGAGCGTATGAAGAGCAAATGCGACAAGTCGATCGACGGATGGCTCAAG
TGAGGATGGTGCCCCCCGGGCAGATTATCCATTTTGTTAAGTCTCATAAG
ATGCCACGGGAGGGCTGGATGTGTGGCGGAGGAGGGACCAAGCAATTCTA
CACCCCAGTGTGGGCGGTGCCCGAGGATTTGAGTGAGATCTACGTATCGT
CAACGATGGCCTCGGAGCATTTCCCCCATATTTTGTTGGAGAATATGCAG
AATGTCTGTGCGGAGTGGGAGATTGCCAGCACCTAG

Synonyms

Publications