jgi.p|Nanoce1779_2|599740, mRNA_7710 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599740
Unique NamemRNA_7710
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length3893
Alignment locationscaffold_21:136471..140363 -

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Properties
Property NameValue
TranscriptId599826
TrackFilteredModels2
ProteinId599740
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:136471..140363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599740gene_7710Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599740mRNA_7710-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7710CDS_7710Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7710 ID=mRNA_7710|Name=jgi.p|Nanoce1779_2|599740|organism=Nannochloropsis oceanica|type=mRNA|length=3893bp
ACAGCCATGACGGGTAGGAGAAGTGGTGTACCGGTTTTCCTGGTATATTC
ATGTGCTCCCTTGCTTCTTCTCCTCCTTCTCGCCTCATCCCCAGTCGTAC
ACGCCTTCCGCCCCGTCAGTCGTAATCCAAAGTGCTACCAGCAACGCACC
CGTGCACAAATGGCCATCACGATGGCAACAGACAATACCCTGGAAACAGA
AGTCTTAATTGTTGGCGTGGGTCCTGCGGGAGTATCGCTTGCTGCGGACC
TGGAGCGTCGAGGCATCATCGATTACCTCCTGGTCGAGAAGGCAAGCTCA
CCGCGTGAAGGGGGCACAGCAATAGGCTTTTGGACTAATGCCTGGCGGTG
CTTGGAGAGCTTGGGGGTGGCGGAGGGATTGCGAAAATCTTATTTACAAG
GCGAACGCGTGCGTATTGGAACTGGCCAAGAAGGCAAGGAACTGACGAGC
TTTAGCCTGGAAGAGTGCGATGGAGGGCCACATGAATTCCGGTACATTAT
GCGTAGCGACCTGTTACGCCAACTTTTGAAAATTGTGCCCAAGCAACGAG
TGGCATATAACAAGGCCGTGGTGGGGTTTCGGGAGGATAAGGGAGAAGGA
GTGGTAATAGCCGAGTTGTCTTGCGGGCAAAAGATCCGATGCAAAGCTTT
GGTGGGGGCGGACGGCGTAGGGAGTACGGTGCACAAATTACTTTTTCCCG
GACAAAAGCTGGCCAACTATGCCGGTTATCAGGCCATTCGTGGTGTGGCC
ACGATATCAAAAAGTGGCAGCTTACCCCCCTTCTTCACGTTTGAAAGAGG
GGTGGTAAATCAAGTGTGGGGCGCTGGCGTGCGGCTTGGTACCTTTCGAA
TGACGGAGACGAGCCTGTATTGGTTTGTGACGTACAATGACCAGCAGCGT
GAAGCAGGCCGCGACGATGATGGTGCAGAATTGCTGCAGAAAGTTCGAAG
CCTGCTTGCTGGGTGGGATGCACGGTGGGGCATTGACACAATTCTTAAAA
ATACACCCGCGCAAGACGTGCTTCGCACTAGCATCGGCGACAGATGGCCA
AAGCCTTTGGGTAATTGGGGTCAAGGCCGCGTGACACTGCTAGGGGATGC
TGCCCATCCCATGACGCCCAATCTGGGCCAGGGCGGGGCGGCTGGCATGG
AGGATGCCTTAGTGCTCGGAGAGCTCTTAGTAGCTGCCTTGGACAAGGGC
GACGTGGGGGCGGAGACGGTTCCTCAAGCCTTGCGAGCCTACGAAAAGGA
ACGTGGGCGCCGCATCACATACCTGACGCTCAAATCATTTATCTTTGGGT
TTTTACTCCAAATACCGTACTCGCCCGTCACCTTTGTTAGGGACAATTTG
GCCCTTCCCTTGGTTTTCAAACCGCGGTCGTTCTTATCCCACACAAAATT
CGAGGCACCACCTCTTCCAAGCAAAGTGGAGAAGAAAAAAAGGCGTATGT
TTCCCCTCATGTAAATTAGTAGATGAAGGGATGTGATTATGATTGAAAGA
AATTCAACCCTTGAGACAAGCCACACGTCCCGTTTTCCCAAAGGCCTCTA
GTGCTAGTGATAAAAAAAAAGACTTTTGCCAGATGATTCCATCACACTTG
AAAGCTGGTAATAAAGTTTTATTACCGGTAGCAGCGAAATGACACGGAGG
GCGCGTACACACACGTTTCCACGGCGTGCCCACCCGAGTCACCCACGGAC
TTGGAATTTTCAGAATCGGTGGGTGGCTCGAAATCGGGTTTGTTCCCCTT
CAGAAATACGTGCGTGTCAGACATCCGGCCTCGTGCTTCACTTAAATGTT
ATAAGTAAAAACACGCGTCAAATCGCACCTATCCTCGACGTTTTCGATAA
AGACGGTGCTGGACCTCGTGCTCTTCTTGGGGGAGGGAAACGATCGGAGA
TGCTCCAGGAGTCCCGCTCCGCATACGCCCTCCTCGCTCCATTTTCTCTC
GTCGTGTTTTTATTGTCACCACTGTGTCTTTGATATTGCTCACAGATCTT
GACCGAAGCTATGATCACAAGGTCACAGCTGTCATAGCGTAGAGCCTCAC
GTTCCGTCCTTTCCGTAACACATCCAATACCTTACCAAGGAGAGGCCCCA
AGCCACCAGTGGGCCGTACACGTCACAGTGACGCCTACAATAGGGGACCA
AGCTGCAATGCGAGTGCTGCAGCGGGGAGACGAACTCTACGCCGAGACCG
GCATTTCCTAGAGGATCCGTGGACGCCACCTAGTCTCTTGTGTTCAGTGG
TCAACTCCAAGCGTCATCATCTCCATCAGCAAGGGCCTCGATCCTGTACG
CCGCCACCCATTGTCGTTGCAGCAGGCCAACTCCAAGCATCGTTCCCGAC
GCCTCCACACCAGACCACCTAGCTTGCCTTGATATAAGTCAATATTTGAC
ACGGATATCATGAATGAAGCCGCCAGGCCCTTACTGTCTGGTAAGGCAGT
CACGACTCTCGTTACCCCACCCTTGTCCCCACGCAAGGATCATCAAATTG
GTACCGCAGCATTGGCTGCCTTGATATTCTTCAGCGTTAGTGGTGGGCCC
TTCGGAATGGAAGAATGCGTGTTGGCAGGAGGCCCTCTTCTGAGCATGGT
TGGCCTTGTCGTGCTTCCCGTGCTTTGGTCAGCACCGGAGGCCCTTATTA
CCGCGGAACTCGCCCCTGCCTTCCCTGAAAGCGCAGGGTCAGTGGCGTGG
GTGGAGGCAGCCTTTGGCCCCTTTTGGGGTTGGATGAAAGGCTTTCTTTC
TTGGCTCAGTGGCGTGACGGACAACGCACTGTATCCCGTCCTTATCTGCG
ACTACCTGGTCTCGTTCTTTGAAAAGGAAGCCGAGGTAATTGGCGTCGCC
CACGGGATCCACCGCGTCTTGCTCTTGCTAGGCCTGACGCTGGTGCTCAC
GTACCTCAACTGGCGCGGGTTGGACGTGGTGGGTAATGCGGCTATTTTAT
TGATGGGACTATGTATGCTGCCGTTTGTCGTGATGTGTGTCGCGGGCATC
ATCCAGTACCAGAGCCTTGATTTTACGCGGCTGGGCCAGTTACCCGAAGG
AGGATGGGGGGCCGTGCAATGGTCGAGCATTCTCAACATTTTATTTTGGC
AACTCAACTATTGGGACTCTGTTTCCACCTTTGCAGGCGATGTCAAGGAC
CCCGGCCATGCCTTTCCACGGGCCCTGGCCGTTGCACTGTTTGTGGTGGT
GCTTAGCACCCTCCTCCCGCTAGCCGTCGCCGTGGCGGGCACGACTTTTT
CGTACAGTGATTATACGGACGGGTTCTTCGGGAAGATTGGCACGGCTTTG
GTGGGAAAGTGGCTGGGGGTGATGGTTGCGCTGGCGGCGGCCTTGTCGTC
GGTGGGCATGTTTGAGGCAGAGATGGCAAGCGATGCCTTCTCGCTCATGG
GCATGGCGGAGCGAGGGCATCTCCCTGCACTCTTTGCCCAGCGCTCACGG
CACGGAACGCCTACTGCTGCCATTTTATGTTCCGCTCTCGGTATCGCTTT
CTTGGCGACCATGTCCTTTTTGGAAATACTGGAAGTGCTGAACTTTTTGT
ACATGCTGGCCATGCTGATTGAGTTTGGCGCCTTTGTTCGCCTGCGCGTG
TCGCGGCCTCTAATGCGTCGGCCATACCGTATCCCGCTCGGCACGGCTGG
AGTGAGCGTGATGTTGACGGGGCCCGTGGTCTTGTTGGTCTGCATGATGG
CCATGGCTCCTCTGAAAGCTTGGGCCATCTGCGGGGTGGCTGTGATGGTG
GGATGTGGGTTGTACTTTGCCCTGCACCACCCTGCCACGCGCCGGTGTTG
CGTCTTTTTGCAGGATCCATTTGAAGCTTCGAGTGCCACAGCGGGTGCAT
GGGAGCCCCTAATGGTCGTGCAGGTTTACGGGACAGACGTAGT
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protein sequence of jgi.p|Nanoce1779_2|599740

>mRNA_7710-protein ID=mRNA_7710-protein|Name=jgi.p|Nanoce1779_2|599740|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MTGRRSGVPVFLVYSCAPLLLLLLLASSPVVHAFRPVSRNPKCYQQRTRA
QMAITMATDNTLETEVLIVGVGPAGVSLAADLERRGIIDYLLVEKASSPR
EGGTAIGFWTNAWRCLESLGVAEGLRKSYLQGERVRIGTGQEGKELTSFS
LEECDGGPHEFRYIMRSDLLRQLLKIVPKQRVAYNKAVVGFREDKGEGVV
IAELSCGQKIRCKALVGADGVGSTVHKLLFPGQKLANYAGYQAIRGVATI
SKSGSLPPFFTFERGVVNQVWGAGVRLGTFRMTETSLYWFVTYNDQQREA
GRDDDGAELLQKVRSLLAGWDARWGIDTILKNTPAQDVLRTSIGDRWPKP
LGNWGQGRVTLLGDAAHPMTPNLGQGGAAGMEDALVLGELLVAALDKGDV
GAETVPQALRAYEKERGRRITYLTLKSFIFGFLLQIPYSPVTFVRDNLAL
PLVFKPRSFLSHTKFEAPPLPSKVEKKKRRMFPLM*
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mRNA from alignment at scaffold_21:136471..140363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7710 ID=mRNA_7710|Name=jgi.p|Nanoce1779_2|599740|organism=Nannochloropsis oceanica|type=mRNA|length=3893bp|location=Sequence derived from alignment at scaffold_21:136471..140363- (Nannochloropsis oceanica)
ACAGCCATGACGGGTAGGAGAAGTGGTGTACCGGTTTTCCTGGTATATTC ATGTGCTCCCTTGCTTCTTCTCCTCCTTCTCGCCTCATCCCCAGTCGTAC ACGCCTTCCGCCCCGTCAGTCGTAATCCAAAGTGCTACCAGCAACGCACC CGTGCACAAATGGCCATCACGATGGCAACAGACAATACCCTGGAAACAGA AGTCTTAATTGTTGGCGTGGGTCCTGCGGGAGTATCGCTTGCTGCGGACC TGGAGCGTCGAGGCATCATCGATTACCTCCTGGTCGAGAAGGCAAGCTCA CCGCGTGAAGGGGGCACAGCAATAGGCTTTTGGACTAATGCCTGGCGGTG CTTGGAGAGCTTGGGGGTGGCGGAGGGATTGCGAAAATCTTATTTACAAG GCGAACGCGTGCGTATTGGAACTGGCCAAGAAGGCAAGGAACTGACGAGC TTTAGCCTGGAAGAGTGCGATGGAGGGCCACATGAATTCCGGTACATTAT GCGTAGCGACCTGTTACGCCAACTTTTGAAAATTGTGCCCAAGCAACGAG TGGCATATAACAAGGCCGTGGTGGGGTTTCGGGAGGATAAGGGAGAAGGA GTGGTAATAGCCGAGTTGTCTTGCGGGCAAAAGATCCGATGCAAAGCTTT GGTGGGGGCGGACGGCGTAGGGAGTACGGTGCACAAATTACTTTTTCCCG GACAAAAGCTGGCCAACTATGCCGGTTATCAGGCCATTCGTGGTGTGGCC ACGATATCAAAAAGTGGCAGCTTACCCCCCTTCTTCACGTTTGAAAGAGG GGTGGTAAATCAAGTGTGGGGCGCTGGCGTGCGGCTTGGTACCTTTCGAA TGACGGAGACGAGCCTGTATTGGTTTGTGACGTACAATGACCAGCAGCGT GAAGCAGGCCGCGACGATGATGGTGCAGAATTGCTGCAGAAAGTTCGAAG CCTGCTTGCTGGGTGGGATGCACGGTGGGGCATTGACACAATTCTTAAAA ATACACCCGCGCAAGACGTGCTTCGCACTAGCATCGGCGACAGATGGCCA AAGCCTTTGGGTAATTGGGGTCAAGGCCGCGTGACACTGCTAGGGGATGC TGCCCATCCCATGACGCCCAATCTGGGCCAGGGCGGGGCGGCTGGCATGG AGGATGCCTTAGTGCTCGGAGAGCTCTTAGTAGCTGCCTTGGACAAGGGC GACGTGGGGGCGGAGACGGTTCCTCAAGCCTTGCGAGCCTACGAAAAGGA ACGTGGGCGCCGCATCACATACCTGACGCTCAAATCATTTATCTTTGGGT TTTTACTCCAAATACCGTACTCGCCCGTCACCTTTGTTAGGGACAATTTG GCCCTTCCCTTGGTTTTCAAACCGCGGTCGTTCTTATCCCACACAAAATT CGAGGCACCACCTCTTCCAAGCAAAGTGGAGAAGAAAAAAAGGCGTATGT TTCCCCTCATGTAAATTAGTAGATGAAGGGATGTGATTATGATTGAAAGA AATTCAACCCTTGAGACAAGCCACACGTCCCGTTTTCCCAAAGGCCTCTA GTGCTAGTGATAAAAAAAAAGACTTTTGCCAGATGATTCCATCACACTTG AAAGCTGGTAATAAAGTTTTATTACCGGTAGCAGCGAAATGACACGGAGG GCGCGTACACACACGTTTCCACGGCGTGCCCACCCGAGTCACCCACGGAC TTGGAATTTTCAGAATCGGTGGGTGGCTCGAAATCGGGTTTGTTCCCCTT CAGAAATACGTGCGTGTCAGACATCCGGCCTCGTGCTTCACTTAAATGTT ATAAGTAAAAACACGCGTCAAATCGCACCTATCCTCGACGTTTTCGATAA AGACGGTGCTGGACCTCGTGCTCTTCTTGGGGGAGGGAAACGATCGGAGA TGCTCCAGGAGTCCCGCTCCGCATACGCCCTCCTCGCTCCATTTTCTCTC GTCGTGTTTTTATTGTCACCACTGTGTCTTTGATATTGCTCACAGATCTT GACCGAAGCTATGATCACAAGGTCACAGCTGTCATAGCGTAGAGCCTCAC GTTCCGTCCTTTCCGTAACACATCCAATACCTTACCAAGGAGAGGCCCCA AGCCACCAGTGGGCCGTACACGTCACAGTGACGCCTACAATAGGGGACCA AGCTGCAATGCGAGTGCTGCAGCGGGGAGACGAACTCTACGCCGAGACCG GCATTTCCTAGAGGATCCGTGGACGCCACCTAGTCTCTTGTGTTCAGTGG TCAACTCCAAGCGTCATCATCTCCATCAGCAAGGGCCTCGATCCTGTACG CCGCCACCCATTGTCGTTGCAGCAGGCCAACTCCAAGCATCGTTCCCGAC GCCTCCACACCAGACCACCTAGCTTGCCTTGATATAAGTCAATATTTGAC ACGGATATCATGAATGAAGCCGCCAGGCCCTTACTGTCTGGTAAGGCAGT CACGACTCTCGTTACCCCACCCTTGTCCCCACGCAAGGATCATCAAATTG GTACCGCAGCATTGGCTGCCTTGATATTCTTCAGCGTTAGTGGTGGGCCC TTCGGAATGGAAGAATGCGTGTTGGCAGGAGGCCCTCTTCTGAGCATGGT TGGCCTTGTCGTGCTTCCCGTGCTTTGGTCAGCACCGGAGGCCCTTATTA CCGCGGAACTCGCCCCTGCCTTCCCTGAAAGCGCAGGGTCAGTGGCGTGG GTGGAGGCAGCCTTTGGCCCCTTTTGGGGTTGGATGAAAGGCTTTCTTTC TTGGCTCAGTGGCGTGACGGACAACGCACTGTATCCCGTCCTTATCTGCG ACTACCTGGTCTCGTTCTTTGAAAAGGAAGCCGAGGTAATTGGCGTCGCC CACGGGATCCACCGCGTCTTGCTCTTGCTAGGCCTGACGCTGGTGCTCAC GTACCTCAACTGGCGCGGGTTGGACGTGGTGGGTAATGCGGCTATTTTAT TGATGGGACTATGTATGCTGCCGTTTGTCGTGATGTGTGTCGCGGGCATC ATCCAGTACCAGAGCCTTGATTTTACGCGGCTGGGCCAGTTACCCGAAGG AGGATGGGGGGCCGTGCAATGGTCGAGCATTCTCAACATTTTATTTTGGC AACTCAACTATTGGGACTCTGTTTCCACCTTTGCAGGCGATGTCAAGGAC CCCGGCCATGCCTTTCCACGGGCCCTGGCCGTTGCACTGTTTGTGGTGGT GCTTAGCACCCTCCTCCCGCTAGCCGTCGCCGTGGCGGGCACGACTTTTT CGTACAGTGATTATACGGACGGGTTCTTCGGGAAGATTGGCACGGCTTTG GTGGGAAAGTGGCTGGGGGTGATGGTTGCGCTGGCGGCGGCCTTGTCGTC GGTGGGCATGTTTGAGGCAGAGATGGCAAGCGATGCCTTCTCGCTCATGG GCATGGCGGAGCGAGGGCATCTCCCTGCACTCTTTGCCCAGCGCTCACGG CACGGAACGCCTACTGCTGCCATTTTATGTTCCGCTCTCGGTATCGCTTT CTTGGCGACCATGTCCTTTTTGGAAATACTGGAAGTGCTGAACTTTTTGT ACATGCTGGCCATGCTGATTGAGTTTGGCGCCTTTGTTCGCCTGCGCGTG TCGCGGCCTCTAATGCGTCGGCCATACCGTATCCCGCTCGGCACGGCTGG AGTGAGCGTGATGTTGACGGGGCCCGTGGTCTTGTTGGTCTGCATGATGG CCATGGCTCCTCTGAAAGCTTGGGCCATCTGCGGGGTGGCTGTGATGGTG GGATGTGGGTTGTACTTTGCCCTGCACCACCCTGCCACGCGCCGGTGTTG CGTCTTTTTGCAGGATCCATTTGAAGCTTCGAGTGCCACAGCGGGTGCAT GGGAGCCCCTAATGGTCGTGCAGGTTTACGGGACAGACGTAGT
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Coding sequence (CDS) from alignment at scaffold_21:136471..140363-

>mRNA_7710 ID=mRNA_7710|Name=jgi.p|Nanoce1779_2|599740|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at scaffold_21:136471..140363- (Nannochloropsis oceanica)
ATGACGGGTAGGAGAAGTGGTGTACCGGTTTTCCTGGTATATTCATGTGC
TCCCTTGCTTCTTCTCCTCCTTCTCGCCTCATCCCCAGTCGTACACGCCT
TCCGCCCCGTCAGTCGTAATCCAAAGTGCTACCAGCAACGCACCCGTGCA
CAAATGGCCATCACGATGGCAACAGACAATACCCTGGAAACAGAAGTCTT
AATTGTTGGCGTGGGTCCTGCGGGAGTATCGCTTGCTGCGGACCTGGAGC
GTCGAGGCATCATCGATTACCTCCTGGTCGAGAAGGCAAGCTCACCGCGT
GAAGGGGGCACAGCAATAGGCTTTTGGACTAATGCCTGGCGGTGCTTGGA
GAGCTTGGGGGTGGCGGAGGGATTGCGAAAATCTTATTTACAAGGCGAAC
GCGTGCGTATTGGAACTGGCCAAGAAGGCAAGGAACTGACGAGCTTTAGC
CTGGAAGAGTGCGATGGAGGGCCACATGAATTCCGGTACATTATGCGTAG
CGACCTGTTACGCCAACTTTTGAAAATTGTGCCCAAGCAACGAGTGGCAT
ATAACAAGGCCGTGGTGGGGTTTCGGGAGGATAAGGGAGAAGGAGTGGTA
ATAGCCGAGTTGTCTTGCGGGCAAAAGATCCGATGCAAAGCTTTGGTGGG
GGCGGACGGCGTAGGGAGTACGGTGCACAAATTACTTTTTCCCGGACAAA
AGCTGGCCAACTATGCCGGTTATCAGGCCATTCGTGGTGTGGCCACGATA
TCAAAAAGTGGCAGCTTACCCCCCTTCTTCACGTTTGAAAGAGGGGTGGT
AAATCAAGTGTGGGGCGCTGGCGTGCGGCTTGGTACCTTTCGAATGACGG
AGACGAGCCTGTATTGGTTTGTGACGTACAATGACCAGCAGCGTGAAGCA
GGCCGCGACGATGATGGTGCAGAATTGCTGCAGAAAGTTCGAAGCCTGCT
TGCTGGGTGGGATGCACGGTGGGGCATTGACACAATTCTTAAAAATACAC
CCGCGCAAGACGTGCTTCGCACTAGCATCGGCGACAGATGGCCAAAGCCT
TTGGGTAATTGGGGTCAAGGCCGCGTGACACTGCTAGGGGATGCTGCCCA
TCCCATGACGCCCAATCTGGGCCAGGGCGGGGCGGCTGGCATGGAGGATG
CCTTAGTGCTCGGAGAGCTCTTAGTAGCTGCCTTGGACAAGGGCGACGTG
GGGGCGGAGACGGTTCCTCAAGCCTTGCGAGCCTACGAAAAGGAACGTGG
GCGCCGCATCACATACCTGACGCTCAAATCATTTATCTTTGGGTTTTTAC
TCCAAATACCGTACTCGCCCGTCACCTTTGTTAGGGACAATTTGGCCCTT
CCCTTGGTTTTCAAACCGCGGTCGTTCTTATCCCACACAAAATTCGAGGC
ACCACCTCTTCCAAGCAAAGTGGAGAAGAAAAAAAGGCGTATGTTTCCCC
TCATGTAA
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Synonyms
Publications