jgi.p|Nanoce1779_2|599737, mRNA_7708 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599737
Unique Name	mRNA_7708
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2121
Alignment location	scaffold_21:133594..135714 -

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Properties


Property Name	Value
TranscriptId	599823
Track	FilteredModels2
ProteinId	599737

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:133594..135714 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599737	gene_7708	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599737	mRNA_7708-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7708	CDS_7708	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:133594..135714-
coding sequence from alignment at scaffold_21:133594..135714-

mRNA sequence

>mRNA_7708 ID=mRNA_7708|Name=jgi.p|Nanoce1779_2|599737|organism=Nannochloropsis oceanica|type=mRNA|length=2121bp
AGAAGAACGACCTTGTCACTGAGACACTGCCAGGGCGCGCAACCGTGGGC
AATTTACCCCCTTTCTCAAGTAGCAGCATCAGCAGCAGCGGCCGCCGCAG
CAGTATCACAACGCGCACAAGCACCATGGCGTCGTCGCAACCACGTGTCC
TGAACTATGACATGTTGCCGGAGCATGTCAAACGTTGCGAGTACGCCGTC
CGTGGAGAGCTGTATCGTGCAGCCACGGCTAGGGTGGCCGCGGGCAAGGA
GGTTATCTTTACCAACGTGGGCAATCCCCACGGCTTGGGCCAGAAGCCCC
TGACCTTCATTCGCCAAGTGTTTGCCCTTGTCAGTGCCCCTTTTCTGTTG
GATCACCCCGATGTCCAACGCCTGTTTCCGCGCGACGCCATTGCCCGTGC
CAAGGCATACCTGAAGGCCGCGCCGGGCGGGATAGGCGCCTACAGCGACT
CCAAGGGTCTCCCCATCGTCCGGCAAGAGTTTGCCGACTTTCTGATGCGG
CGTGATGGCTTTGGTGCCAACATTGATAATATATTTCTTACTAACGGGGC
CAGCGAGGGCGTGCGCCTGGGCTTGACTGCGTTGCTCCGCGGGCCGCAAG
ACGGCATCCTGGTGCCCATTCCCCAGTATCCGCTATACTCGGCCGCCATA
CAGCTCTTGAACGGGAGCATGGTCGGCTACTACTTGCGCGAGGAGTCTGG
CTGGTCCCTTGACTTCGACGAGCTGGAGCGGGCGGTACGGGACGCGAAGC
GGCAGGGCGTGCAGGTGCGTGGGATGGTGTTCATCAACCCGGGCAATCCC
ACGGGCCAGTGCCTTAGCCGCAAGGACTTGGAGGGCCTCATCAAGTTCGC
ACACAAGCACAAGCTTGTCCTGATGGCGGACGAAGTTTACCAGGACAATA
TCTATCAGAGCGTGCGGCCCTTCATCTCGGCGCGGCACGTGGCCCTGAGC
ATGGGCGCACCCTTCGCCACGGACGTGGAGATTGCCACCTTCCACACGGC
CTCCAAAGGCGTGTACGGTGAGTGTGGCTTTCGCGGGGGGGTGATGGAGC
TGCTCAACTTTGATCAGCGCGTGTCCGACGAACTGTACAAGCTGGCATCT
ATCAACCTGTCGCCCAACGTTCCCGGCCAGGTTGTGCTGGGGCTGATGAT
CAATGGGCCTCGACCGGGAGACGAGTCGTATGCACAATACGCGCGTGAGA
AGCAGGAGCTGCTTGACTCGCTTCGACGCCGGGCCCGGGCCATCACTGAC
GCCTTCAACAGCTGTGAGGGGATAGTGTGTCAGGAGACGGAGGGTGCCAT
GTACTCCTTTCCAAAGATCACCCTTCCGGCCGGGGCGATGGCGGCGGCTA
AGGCGGCAGGCAAGGCACCCGATGTCTTTTACTGCCTCAAGCTTCTGGAG
CAGACGGGCATTTCTACTGTACCGGGATCGGGCTTCAAGCAACGGGACGG
GACGTTCCACTTCCGCACCACCATCTTGCCGCCCGAGAGCCAGTTCCAAT
CAATCATTCAGCGGTTTCTGGCCTTCCATTCCGCCTTCATGGCCGAGTAC
AAGGGCTCGAGTGGGACAAGTGTCAGTACACGCGCGCGATTGTAGATAGC
GAAAAAAGTGAGATCTGAGAGGGAGAGACGGTGGGGAGAGGAAAAACAAA
GAGGAATGTGTCTAGACAGAATAGAAAGGGAAAGAGGAGATGAGTGGGCC
GGGTATCGTGTCAATTTCTTTGTGGCTATTGACGTAAGCGTCACCGGCAT
ACGTAAGGCATGTCTTGCGCTTCTTTAAAAATCGTGCCTGTGAAAGGATG
ATGCATTTTTGTGTTCTTGGTGTCTGTGTGTGTGCGAAAGCGCGTGTGAG
GGTGTAGCATGCGATTATTAGAGACCTGCGAATCGACACTTCATTACGAT
ATACATACGAGCAGGTAGAGCTGTCCGCGCGTATTAGCTCCGTACAATAG
AGACTCATGGGGCTCTGCAACCGCGAGCATCGTCATCATGTGTGCGTGGA
GGAGATAAAGATGGGAAGCCAAAAGTTTTTTTCTTTTGCAGCAATAGATA
ATATCAAACGATTTAAGTAGGAGAGAAAGAAGAGAATCAAGGGTAAAACA
CCAGCTTTCCCATCCAAAAAA

protein sequence of jgi.p|Nanoce1779_2|599737

>mRNA_7708-protein ID=mRNA_7708-protein|Name=jgi.p|Nanoce1779_2|599737|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MASSQPRVLNYDMLPEHVKRCEYAVRGELYRAATARVAAGKEVIFTNVGN
PHGLGQKPLTFIRQVFALVSAPFLLDHPDVQRLFPRDAIARAKAYLKAAP
GGIGAYSDSKGLPIVRQEFADFLMRRDGFGANIDNIFLTNGASEGVRLGL
TALLRGPQDGILVPIPQYPLYSAAIQLLNGSMVGYYLREESGWSLDFDEL
ERAVRDAKRQGVQVRGMVFINPGNPTGQCLSRKDLEGLIKFAHKHKLVLM
ADEVYQDNIYQSVRPFISARHVALSMGAPFATDVEIATFHTASKGVYGEC
GFRGGVMELLNFDQRVSDELYKLASINLSPNVPGQVVLGLMINGPRPGDE
SYAQYAREKQELLDSLRRRARAITDAFNSCEGIVCQETEGAMYSFPKITL
PAGAMAAAKAAGKAPDVFYCLKLLEQTGISTVPGSGFKQRDGTFHFRTTI
LPPESQFQSIIQRFLAFHSAFMAEYKGSSGTSVSTRARL*

mRNA from alignment at scaffold_21:133594..135714-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7708 ID=mRNA_7708|Name=jgi.p|Nanoce1779_2|599737|organism=Nannochloropsis oceanica|type=mRNA|length=2121bp|location=Sequence derived from alignment at scaffold_21:133594..135714- (Nannochloropsis oceanica)
AGAAGAACGACCTTGTCACTGAGACACTGCCAGGGCGCGCAACCGTGGGC
AATTTACCCCCTTTCTCAAGTAGCAGCATCAGCAGCAGCGGCCGCCGCAG
CAGTATCACAACGCGCACAAGCACCATGGCGTCGTCGCAACCACGTGTCC
TGAACTATGACATGTTGCCGGAGCATGTCAAACGTTGCGAGTACGCCGTC
CGTGGAGAGCTGTATCGTGCAGCCACGGCTAGGGTGGCCGCGGGCAAGGA
GGTTATCTTTACCAACGTGGGCAATCCCCACGGCTTGGGCCAGAAGCCCC
TGACCTTCATTCGCCAAGTGTTTGCCCTTGTCAGTGCCCCTTTTCTGTTG
GATCACCCCGATGTCCAACGCCTGTTTCCGCGCGACGCCATTGCCCGTGC
CAAGGCATACCTGAAGGCCGCGCCGGGCGGGATAGGCGCCTACAGCGACT
CCAAGGGTCTCCCCATCGTCCGGCAAGAGTTTGCCGACTTTCTGATGCGG
CGTGATGGCTTTGGTGCCAACATTGATAATATATTTCTTACTAACGGGGC
CAGCGAGGGCGTGCGCCTGGGCTTGACTGCGTTGCTCCGCGGGCCGCAAG
ACGGCATCCTGGTGCCCATTCCCCAGTATCCGCTATACTCGGCCGCCATA
CAGCTCTTGAACGGGAGCATGGTCGGCTACTACTTGCGCGAGGAGTCTGG
CTGGTCCCTTGACTTCGACGAGCTGGAGCGGGCGGTACGGGACGCGAAGC
GGCAGGGCGTGCAGGTGCGTGGGATGGTGTTCATCAACCCGGGCAATCCC
ACGGGCCAGTGCCTTAGCCGCAAGGACTTGGAGGGCCTCATCAAGTTCGC
ACACAAGCACAAGCTTGTCCTGATGGCGGACGAAGTTTACCAGGACAATA
TCTATCAGAGCGTGCGGCCCTTCATCTCGGCGCGGCACGTGGCCCTGAGC
ATGGGCGCACCCTTCGCCACGGACGTGGAGATTGCCACCTTCCACACGGC
CTCCAAAGGCGTGTACGGTGAGTGTGGCTTTCGCGGGGGGGTGATGGAGC
TGCTCAACTTTGATCAGCGCGTGTCCGACGAACTGTACAAGCTGGCATCT
ATCAACCTGTCGCCCAACGTTCCCGGCCAGGTTGTGCTGGGGCTGATGAT
CAATGGGCCTCGACCGGGAGACGAGTCGTATGCACAATACGCGCGTGAGA
AGCAGGAGCTGCTTGACTCGCTTCGACGCCGGGCCCGGGCCATCACTGAC
GCCTTCAACAGCTGTGAGGGGATAGTGTGTCAGGAGACGGAGGGTGCCAT
GTACTCCTTTCCAAAGATCACCCTTCCGGCCGGGGCGATGGCGGCGGCTA
AGGCGGCAGGCAAGGCACCCGATGTCTTTTACTGCCTCAAGCTTCTGGAG
CAGACGGGCATTTCTACTGTACCGGGATCGGGCTTCAAGCAACGGGACGG
GACGTTCCACTTCCGCACCACCATCTTGCCGCCCGAGAGCCAGTTCCAAT
CAATCATTCAGCGGTTTCTGGCCTTCCATTCCGCCTTCATGGCCGAGTAC
AAGGGCTCGAGTGGGACAAGTGTCAGTACACGCGCGCGATTGTAGATAGC
GAAAAAAGTGAGATCTGAGAGGGAGAGACGGTGGGGAGAGGAAAAACAAA
GAGGAATGTGTCTAGACAGAATAGAAAGGGAAAGAGGAGATGAGTGGGCC
GGGTATCGTGTCAATTTCTTTGTGGCTATTGACGTAAGCGTCACCGGCAT
ACGTAAGGCATGTCTTGCGCTTCTTTAAAAATCGTGCCTGTGAAAGGATG
ATGCATTTTTGTGTTCTTGGTGTCTGTGTGTGTGCGAAAGCGCGTGTGAG
GGTGTAGCATGCGATTATTAGAGACCTGCGAATCGACACTTCATTACGAT
ATACATACGAGCAGGTAGAGCTGTCCGCGCGTATTAGCTCCGTACAATAG
AGACTCATGGGGCTCTGCAACCGCGAGCATCGTCATCATGTGTGCGTGGA
GGAGATAAAGATGGGAAGCCAAAAGTTTTTTTCTTTTGCAGCAATAGATA
ATATCAAACGATTTAAGTAGGAGAGAAAGAAGAGAATCAAGGGTAAAACA
CCAGCTTTCCCATCCAAAAAA

Coding sequence (CDS) from alignment at scaffold_21:133594..135714-

>mRNA_7708 ID=mRNA_7708|Name=jgi.p|Nanoce1779_2|599737|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_21:133594..135714- (Nannochloropsis oceanica)
ATGGCGTCGTCGCAACCACGTGTCCTGAACTATGACATGTTGCCGGAGCA
TGTCAAACGTTGCGAGTACGCCGTCCGTGGAGAGCTGTATCGTGCAGCCA
CGGCTAGGGTGGCCGCGGGCAAGGAGGTTATCTTTACCAACGTGGGCAAT
CCCCACGGCTTGGGCCAGAAGCCCCTGACCTTCATTCGCCAAGTGTTTGC
CCTTGTCAGTGCCCCTTTTCTGTTGGATCACCCCGATGTCCAACGCCTGT
TTCCGCGCGACGCCATTGCCCGTGCCAAGGCATACCTGAAGGCCGCGCCG
GGCGGGATAGGCGCCTACAGCGACTCCAAGGGTCTCCCCATCGTCCGGCA
AGAGTTTGCCGACTTTCTGATGCGGCGTGATGGCTTTGGTGCCAACATTG
ATAATATATTTCTTACTAACGGGGCCAGCGAGGGCGTGCGCCTGGGCTTG
ACTGCGTTGCTCCGCGGGCCGCAAGACGGCATCCTGGTGCCCATTCCCCA
GTATCCGCTATACTCGGCCGCCATACAGCTCTTGAACGGGAGCATGGTCG
GCTACTACTTGCGCGAGGAGTCTGGCTGGTCCCTTGACTTCGACGAGCTG
GAGCGGGCGGTACGGGACGCGAAGCGGCAGGGCGTGCAGGTGCGTGGGAT
GGTGTTCATCAACCCGGGCAATCCCACGGGCCAGTGCCTTAGCCGCAAGG
ACTTGGAGGGCCTCATCAAGTTCGCACACAAGCACAAGCTTGTCCTGATG
GCGGACGAAGTTTACCAGGACAATATCTATCAGAGCGTGCGGCCCTTCAT
CTCGGCGCGGCACGTGGCCCTGAGCATGGGCGCACCCTTCGCCACGGACG
TGGAGATTGCCACCTTCCACACGGCCTCCAAAGGCGTGTACGGTGAGTGT
GGCTTTCGCGGGGGGGTGATGGAGCTGCTCAACTTTGATCAGCGCGTGTC
CGACGAACTGTACAAGCTGGCATCTATCAACCTGTCGCCCAACGTTCCCG
GCCAGGTTGTGCTGGGGCTGATGATCAATGGGCCTCGACCGGGAGACGAG
TCGTATGCACAATACGCGCGTGAGAAGCAGGAGCTGCTTGACTCGCTTCG
ACGCCGGGCCCGGGCCATCACTGACGCCTTCAACAGCTGTGAGGGGATAG
TGTGTCAGGAGACGGAGGGTGCCATGTACTCCTTTCCAAAGATCACCCTT
CCGGCCGGGGCGATGGCGGCGGCTAAGGCGGCAGGCAAGGCACCCGATGT
CTTTTACTGCCTCAAGCTTCTGGAGCAGACGGGCATTTCTACTGTACCGG
GATCGGGCTTCAAGCAACGGGACGGGACGTTCCACTTCCGCACCACCATC
TTGCCGCCCGAGAGCCAGTTCCAATCAATCATTCAGCGGTTTCTGGCCTT
CCATTCCGCCTTCATGGCCGAGTACAAGGGCTCGAGTGGGACAAGTGTCA
GTACACGCGCGCGATTGTAG

Synonyms

Publications