jgi.p|Nanoce1779_2|166845, mRNA_7706 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|166845
Unique NamemRNA_7706
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length493
Alignment locationscaffold_21:124670..125162 +

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Properties
Property NameValue
TranscriptId166931
TrackFilteredModels2
ProteinId166845
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:124670..125162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|166845gene_7706Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|166845mRNA_7706-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7706CDS_7706Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7706 ID=mRNA_7706|Name=jgi.p|Nanoce1779_2|166845|organism=Nannochloropsis oceanica|type=mRNA|length=493bp
GGCTGTAGCGGACCATACTTCTCTGTGGTGGAGTACATGCGGAAGGGATG
ATTATGAGTGTTGAGAACTGGAACTGGGTAGTGCGTGGGTTAGCATGGGG
GAGGCAGGCTTGCGGGCTGGTCCACAATCGACGCCTGGGTAATGCAGTCT
GCCATTGATCTGCATATCATCATCCTTTCCTTGTTGCTAATATGCCGCGG
TGGTGCTGTATGTAGTCCTTGTGGTGGTGGTGCTGCTGCTGTGTGCCGCT
CATGTCCTTCGCCATCACTTTCCTTCTTTCTCTCCTCCGGTCGTCATGCT
GATGACCGTCCATTCTCCACCGCTTCTTGCCCAGTACAGGGCCCAGTACG
AAACGCACTCTATCCACACAATTCACCTTGTAAGTCATTTCATTGCAGAC
GACAAGGTCATGAGTAAGATGCAGCTCTAGGCAAAGCCTCCTCTTTGTCC
GCCACCTTGGGGTGCGCGGTTGGTGGGAGACGGAGATTGTTTC
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protein sequence of jgi.p|Nanoce1779_2|166845

>mRNA_7706-protein ID=mRNA_7706-protein|Name=jgi.p|Nanoce1779_2|166845|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MQSAIDLHIIILSLLLICRGGAVCSPCGGGAAAVCRSCPSPSLSFFLSSG
RHADDRPFSTASCPVQGPVRNALYPHNSPCKSFHCRRQGHE*
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mRNA from alignment at scaffold_21:124670..125162+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7706 ID=mRNA_7706|Name=jgi.p|Nanoce1779_2|166845|organism=Nannochloropsis oceanica|type=mRNA|length=493bp|location=Sequence derived from alignment at scaffold_21:124670..125162+ (Nannochloropsis oceanica)
GGCTGTAGCGGACCATACTTCTCTGTGGTGGAGTACATGCGGAAGGGATG
ATTATGAGTGTTGAGAACTGGAACTGGGTAGTGCGTGGGTTAGCATGGGG
GAGGCAGGCTTGCGGGCTGGTCCACAATCGACGCCTGGGTAATGCAGTCT
GCCATTGATCTGCATATCATCATCCTTTCCTTGTTGCTAATATGCCGCGG
TGGTGCTGTATGTAGTCCTTGTGGTGGTGGTGCTGCTGCTGTGTGCCGCT
CATGTCCTTCGCCATCACTTTCCTTCTTTCTCTCCTCCGGTCGTCATGCT
GATGACCGTCCATTCTCCACCGCTTCTTGCCCAGTACAGGGCCCAGTACG
AAACGCACTCTATCCACACAATTCACCTTGTAAGTCATTTCATTGCAGAC
GACAAGGTCATGAGTAAGATGCAGCTCTAGGCAAAGCCTCCTCTTTGTCC
GCCACCTTGGGGTGCGCGGTTGGTGGGAGACGGAGATTGTTTC
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Coding sequence (CDS) from alignment at scaffold_21:124670..125162+

>mRNA_7706 ID=mRNA_7706|Name=jgi.p|Nanoce1779_2|166845|organism=Nannochloropsis oceanica|type=CDS|length=276bp|location=Sequence derived from alignment at scaffold_21:124670..125162+ (Nannochloropsis oceanica)
ATGCAGTCTGCCATTGATCTGCATATCATCATCCTTTCCTTGTTGCTAAT
ATGCCGCGGTGGTGCTGTATGTAGTCCTTGTGGTGGTGGTGCTGCTGCTG
TGTGCCGCTCATGTCCTTCGCCATCACTTTCCTTCTTTCTCTCCTCCGGT
CGTCATGCTGATGACCGTCCATTCTCCACCGCTTCTTGCCCAGTACAGGG
CCCAGTACGAAACGCACTCTATCCACACAATTCACCTTGTAAGTCATTTC
ATTGCAGACGACAAGGTCATGAGTAA
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Synonyms
Publications