jgi.p|Nanoce1779_2|599729, mRNA_7705 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599729
Unique NamemRNA_7705
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length821
Alignment locationscaffold_21:123685..124695 -

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Properties
Property NameValue
TranscriptId599815
TrackFilteredModels2
ProteinId599729
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:123685..124695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599729gene_7705Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599729mRNA_7705-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7705CDS_7705Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7705 ID=mRNA_7705|Name=jgi.p|Nanoce1779_2|599729|organism=Nannochloropsis oceanica|type=mRNA|length=821bp
ACAGAGAAGTATGGTCCGCTACAGCCGTGAGCCCGATGATCCCAACAAGG
CCGCCAAGGCCCGTGGCTCGCATCTGCGCGTCCACTTCAAGCACGTCCGC
GAAGTGTGCCACACCGTCATGGGTTGGCAGGTGAGTAAGGCCAAACAGTT
CCTGGAGGACGTGCTGCAGTACAAGCGGGCGGTGCCCTTTACCCGCTTCA
CGCAGGGCGTGGGGCGACACGCCCAGGCCAAGCTCCTGAACGTACCTGGC
TCTCAGTGTGCCTGGCCCCAGAAGGCCACCAAGGTGGTGCTGGACATGCT
CACCAACGCCGAGTCCAATGCCGAGGTGAAGGGCATGGACACCGATAACC
TCTACATCATTCACGCCCAGACTAATCGGGCGCCCAAGCAACGCCGACGA
ACCTACCGAGCCCACGGCCGCATTAACCCCTACATGTCCAGTCCGGCTCA
CTTGGAGATTATCCTGACCGAGAAGCCCGTGCATGTCAAAAAGGAGGCCG
GTGCGCCCAAGCTTACCCGCAAGCAGGCGGCCCGAGTGCGCGTCGGCGGT
GGCAACTAAATCAGTCAAGAGGAGAGGTAGAGGAAGTGGAAGAAGACGGA
CAGACTGGTTTGCAATTATTTTTTTGGTCGGCTGTAGCATGTTGATGCGT
TGACTCAAGCGGTGTCAGGAAGTCGATGGGGGAATTTTGGCCTTGGGCGC
GACGGTGTGTGGAGTGAGGGACCATGTCATACCGTAGAGGAGCGAGCAAG
GGTTACGCATCGTTTGCTTGATTGTACGGAAGCCCAAAAACGCAAAATAA
TTGAGATGGAAACAGTGATTG
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protein sequence of jgi.p|Nanoce1779_2|599729

>mRNA_7705-protein ID=mRNA_7705-protein|Name=jgi.p|Nanoce1779_2|599729|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLED
VLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNA
ESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEI
ILTEKPVHVKKEAGAPKLTRKQAARVRVGGGN*
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mRNA from alignment at scaffold_21:123685..124695-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7705 ID=mRNA_7705|Name=jgi.p|Nanoce1779_2|599729|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp|location=Sequence derived from alignment at scaffold_21:123685..124695- (Nannochloropsis oceanica)
ACAGAGAAGTATGGTCCGCTACAGCCGTGAGCCCGATGATCCCAACAAGG
GTACGTTATGTGCCCTCTCCCCTTTCCCCCTGTCTCCTCTTTGTCTTGCT
TAGTCCTTGGTTCACCTGGGATCATCCATCACCCACCATGCCCTGAGCTT
CCTAAGCATTCGTATTGTCACTCGACGATCCCCATCGTCATTATGGCATC
TACTAACCAATTCTTGCCTCCAACCACACCATTTAAATAGCCGCCAAGGC
CCGTGGCTCGCATCTGCGCGTCCACTTCAAGCACGTCCGCGAAGTGTGCC
ACACCGTCATGGGTTGGCAGGTGAGTAAGGCCAAACAGTTCCTGGAGGAC
GTGCTGCAGTACAAGCGGGCGGTGCCCTTTACCCGCTTCACGCAGGGCGT
GGGGCGACACGCCCAGGCCAAGCTCCTGAACGTACCTGGCTCTCAGTGTG
CCTGGCCCCAGAAGGCCACCAAGGTGGTGCTGGACATGCTCACCAACGCC
GAGTCCAATGCCGAGGTGAAGGGCATGGACACCGATAACCTCTACATCAT
TCACGCCCAGACTAATCGGGCGCCCAAGCAACGCCGACGAACCTACCGAG
CCCACGGCCGCATTAACCCCTACATGTCCAGTCCGGCTCACTTGGAGATT
ATCCTGACCGAGAAGCCCGTGCATGTCAAAAAGGAGGCCGGTGCGCCCAA
GCTTACCCGCAAGCAGGCGGCCCGAGTGCGCGTCGGCGGTGGCAACTAAA
TCAGTCAAGAGGAGAGGTAGAGGAAGTGGAAGAAGACGGACAGACTGGTT
TGCAATTATTTTTTTGGTCGGCTGTAGCATGTTGATGCGTTGACTCAAGC
GGTGTCAGGAAGTCGATGGGGGAATTTTGGCCTTGGGCGCGACGGTGTGT
GGAGTGAGGGACCATGTCATACCGTAGAGGAGCGAGCAAGGGTTACGCAT
CGTTTGCTTGATTGTACGGAAGCCCAAAAACGCAAAATAATTGAGATGGA
AACAGTGATTG
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Coding sequence (CDS) from alignment at scaffold_21:123685..124695-

>mRNA_7705 ID=mRNA_7705|Name=jgi.p|Nanoce1779_2|599729|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at scaffold_21:123685..124695- (Nannochloropsis oceanica)
CCGCCAAGGCCCGTGGCTCGCATCTGCGCGTCCACTTCAAGCACGTCCGC
GAAGTGTGCCACACCGTCATGGGTTGGCAGGTGAGTAAGGCCAAACAGTT
CCTGGAGGACGTGCTGCAGTACAAGCGGGCGGTGCCCTTTACCCGCTTCA
CGCAGGGCGTGGGGCGACACGCCCAGGCCAAGCTCCTGAACGTACCTGGC
TCTCAGTGTGCCTGGCCCCAGAAGGCCACCAAGGTGGTGCTGGACATGCT
CACCAACGCCGAGTCCAATGCCGAGGTGAAGGGCATGGACACCGATAACC
TCTACATCATTCACGCCCAGACTAATCGGGCGCCCAAGCAACGCCGACGA
ACCTACCGAGCCCACGGCCGCATTAACCCCTACATGTCCAGTCCGGCTCA
CTTGGAGATTATCCTGACCGAGAAGCCCGTGCATGTCAAAAAGGAGGCCG
GTGCGCCCAAGCTTACCCGCAAGCAGGCGGCCCGAGTGCGCGTCGGCGGT
GGCAACTAAATGGTCCGCTACAGCCGTGAGCCCGATGATCCCAACAAGGC
CGCCAAGGCCCGTGGCTCGCATCTGCGCGTCCACTTCAAGCACGTCCGCG
AAGTGTGCCACACCGTCATGGGTTGGCAGGTGAGTAAGGCCAAACAGTTC
CTGGAGGACGTGCTGCAGTACAAGCGGGCGGTGCCCTTTACCCGCTTCAC
GCAGGGCGTGGGGCGACACGCCCAGGCCAAGCTCCTGAACGTACCTGGCT
CTCAGTGTGCCTGGCCCCAGAAGGCCACCAAGGTGGTGCTGGACATGCTC
ACCAACGCCGAGTCCAATGCCGAGGTGAAGGGCATGGACACCGATAACCT
CTACATCATTCACGCCCAGACTAATCGGGCGCCCAAGCAACGCCGACGAA
CCTACCGAGCCCACGGCCGCATTAACCCCTACATGTCCAGTCCGGCTCAC
TTGGAGATTATCCTGACCGAGAAGCCCGTGCATGTCAAAAAGGAGGCCGG
TGCGCCCAAGCTTACCCGCAAGCAGGCGGCCCGAGTGCGCGTCGGCGGTG
GCAACTAAATGGTCCGCTACAGCCGTGAGCCCGATGATCCCAACAAGG
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Synonyms
Publications