jgi.p|Nanoce1779_2|623860, mRNA_7704 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|623860
Unique NamemRNA_7704
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1335
Alignment locationscaffold_21:121961..123404 -

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Properties
Property NameValue
TranscriptId623946
TrackFilteredModels2
ProteinId623860
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:121961..123404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623860gene_7704Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623860mRNA_7704-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7704CDS_7704Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7704 ID=mRNA_7704|Name=jgi.p|Nanoce1779_2|623860|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp
ATGCTGACGGAGCGACAAAAGGCGGACCTGCATGTGGCCATCCTGGAGTA
CCTGCGCGACGGCGGGAAAGGCCTAGCACAGTCCGCAGAGTCCTTTGCCC
GGGAAGTTGGCCTGGAAACGGCCGACGTCCCTAAGTCCACAGGTACCCTG
GAAAAGAAATGGACCGCAGTGGTGCGCCTGCAAAAAAAAGTCATGGAGCT
CGAAGAGCGCCTTGCAAACACCGAGCAAGAGCTCAAGACCTCGCGGTTTC
ATCCTTATGGTGTGGTGGGTGTGCGGCCGCTGGCTGCCGGCGGGGCTCGC
AACCTGCCTCGTGCCCCGGCAGTGCAGACGCTTGTGGGCCATCGTGGCGG
CGTGACATGTCTGACGACGCACCCCGTCTTTGCCCTACTCGTCTCCGGGA
GCGAAGATTCTACGATTAAAACCTGGGATTTGGAGAGCGGGGTGTATGAA
AAGACATTGAAAGGGCACACGAATGGATTGCAATCCCTGGTGTTTAACCG
AGCAGGCACCCTCTTAGCTTCTTGCTCCAGCGACCTTAGCATCAAGATTT
GGGATTTCGGTCCCTCAGCGACCGTGCCTGACTGCCTTCGAACGCTCCGA
GGCCACGACCATAACATCTCTGGCTTGATTTTTTTAGGGCCATCGGACGC
GCAGCTTGTGTCGTGCTCCCGGGACACGACTGTGAAGATATGGGAGGTTA
GCACAGGGTATTGCTTGCGGACATTGACGGAAGGACACACGGACTGGGTG
CGTTGCTTGGCTGCAAGTGAGGATGGCGCTCTTGTGGCGAGTGGAGGAAA
TGATCAGACAATTGTGGTGTGGAATTTGTCGACGGGCTCACCGACCTTGA
CGCTACGGGAGCACACGCACGTGGTGGAGAGTTTGGCGTTTCCGCCCGTC
GGGACGGAGGTGAAGTTGGACGACAAATGCAGCAGCAGCAGTAGTAGCAG
CAGCAGCAGCACCACCACCAATACTACTACCATTGGGAAAGCGGGTAATA
GTATCAGCGGCCGAGCTGTGCGTGCTTATTTGGTGTCGGGTGGGCGGGAT
AAGACTGTCAAGCTATGGGACGCCGTGACGGGCCAATGTCTCTCGACCTT
TTCTGACCACGATAACTGGGTACGTTCCGTCTGTTTCCACCCCTCTGGAC
AATATATCTTGAGCGTTTCGGATGACAGAAGCATGCGTGTTTTTGATATT
GCCAGGGCACGGTGTGTCCGCACAATAGCGGACGCACACAGTCAGTTTGT
GACTGCGCTGACACAGCACGTGGTCTTGCCCTATGTGGCGACAGGGAGCG
TAGATAGAGAGATAAAGGTGTGGGAGTGCCGGTAG
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protein sequence of jgi.p|Nanoce1779_2|623860

>mRNA_7704-protein ID=mRNA_7704-protein|Name=jgi.p|Nanoce1779_2|623860|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MLTERQKADLHVAILEYLRDGGKGLAQSAESFAREVGLETADVPKSTGTL
EKKWTAVVRLQKKVMELEERLANTEQELKTSRFHPYGVVGVRPLAAGGAR
NLPRAPAVQTLVGHRGGVTCLTTHPVFALLVSGSEDSTIKTWDLESGVYE
KTLKGHTNGLQSLVFNRAGTLLASCSSDLSIKIWDFGPSATVPDCLRTLR
GHDHNISGLIFLGPSDAQLVSCSRDTTVKIWEVSTGYCLRTLTEGHTDWV
RCLAASEDGALVASGGNDQTIVVWNLSTGSPTLTLREHTHVVESLAFPPV
GTEVKLDDKCSSSSSSSSSSTTTNTTTIGKAGNSISGRAVRAYLVSGGRD
KTVKLWDAVTGQCLSTFSDHDNWVRSVCFHPSGQYILSVSDDRSMRVFDI
ARARCVRTIADAHSQFVTALTQHVVLPYVATGSVDREIKVWECR*
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mRNA from alignment at scaffold_21:121961..123404-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7704 ID=mRNA_7704|Name=jgi.p|Nanoce1779_2|623860|organism=Nannochloropsis oceanica|type=mRNA|length=1444bp|location=Sequence derived from alignment at scaffold_21:121961..123404- (Nannochloropsis oceanica)
ATGCTGACGGAGCGACAAAAGGCGGACCTGTAAGTACATCTTGTATCTGC
TTTCCCCCCATATCCTCAACCACCATCGCCATTGCCTCCCCCATCCAACA
CGCACCCTCCACACCTCCACTCCACAACCCAAACAAAGGCATGTGGCCAT
CCTGGAGTACCTGCGCGACGGCGGGAAAGGCCTAGCACAGTCCGCAGAGT
CCTTTGCCCGGGAAGTTGGCCTGGAAACGGCCGACGTCCCTAAGTCCACA
GGTACCCTGGAAAAGAAATGGACCGCAGTGGTGCGCCTGCAAAAAAAAGT
CATGGAGCTCGAAGAGCGCCTTGCAAACACCGAGCAAGAGCTCAAGACCT
CGCGGTTTCATCCTTATGGTGTGGTGGGTGTGCGGCCGCTGGCTGCCGGC
GGGGCTCGCAACCTGCCTCGTGCCCCGGCAGTGCAGACGCTTGTGGGCCA
TCGTGGCGGCGTGACATGTCTGACGACGCACCCCGTCTTTGCCCTACTCG
TCTCCGGGAGCGAAGATTCTACGATTAAAACCTGGGATTTGGAGAGCGGG
GTGTATGAAAAGACATTGAAAGGGCACACGAATGGATTGCAATCCCTGGT
GTTTAACCGAGCAGGCACCCTCTTAGCTTCTTGCTCCAGCGACCTTAGCA
TCAAGATTTGGGATTTCGGTCCCTCAGCGACCGTGCCTGACTGCCTTCGA
ACGCTCCGAGGCCACGACCATAACATCTCTGGCTTGATTTTTTTAGGGCC
ATCGGACGCGCAGCTTGTGTCGTGCTCCCGGGACACGACTGTGAAGATAT
GGGAGGTTAGCACAGGGTATTGCTTGCGGACATTGACGGAAGGACACACG
GACTGGGTGCGTTGCTTGGCTGCAAGTGAGGATGGCGCTCTTGTGGCGAG
TGGAGGAAATGATCAGACAATTGTGGTGTGGAATTTGTCGACGGGCTCAC
CGACCTTGACGCTACGGGAGCACACGCACGTGGTGGAGAGTTTGGCGTTT
CCGCCCGTCGGGACGGAGGTGAAGTTGGACGACAAATGCAGCAGCAGCAG
TAGTAGCAGCAGCAGCAGCACCACCACCAATACTACTACCATTGGGAAAG
CGGGTAATAGTATCAGCGGCCGAGCTGTGCGTGCTTATTTGGTGTCGGGT
GGGCGGGATAAGACTGTCAAGCTATGGGACGCCGTGACGGGCCAATGTCT
CTCGACCTTTTCTGACCACGATAACTGGGTACGTTCCGTCTGTTTCCACC
CCTCTGGACAATATATCTTGAGCGTTTCGGATGACAGAAGCATGCGTGTT
TTTGATATTGCCAGGGCACGGTGTGTCCGCACAATAGCGGACGCACACAG
TCAGTTTGTGACTGCGCTGACACAGCACGTGGTCTTGCCCTATGTGGCGA
CAGGGAGCGTAGATAGAGAGATAAAGGTGTGGGAGTGCCGGTAG
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Coding sequence (CDS) from alignment at scaffold_21:121961..123404-

>mRNA_7704 ID=mRNA_7704|Name=jgi.p|Nanoce1779_2|623860|organism=Nannochloropsis oceanica|type=CDS|length=2670bp|location=Sequence derived from alignment at scaffold_21:121961..123404- (Nannochloropsis oceanica)
GCATGTGGCCATCCTGGAGTACCTGCGCGACGGCGGGAAAGGCCTAGCAC
AGTCCGCAGAGTCCTTTGCCCGGGAAGTTGGCCTGGAAACGGCCGACGTC
CCTAAGTCCACAGGTACCCTGGAAAAGAAATGGACCGCAGTGGTGCGCCT
GCAAAAAAAAGTCATGGAGCTCGAAGAGCGCCTTGCAAACACCGAGCAAG
AGCTCAAGACCTCGCGGTTTCATCCTTATGGTGTGGTGGGTGTGCGGCCG
CTGGCTGCCGGCGGGGCTCGCAACCTGCCTCGTGCCCCGGCAGTGCAGAC
GCTTGTGGGCCATCGTGGCGGCGTGACATGTCTGACGACGCACCCCGTCT
TTGCCCTACTCGTCTCCGGGAGCGAAGATTCTACGATTAAAACCTGGGAT
TTGGAGAGCGGGGTGTATGAAAAGACATTGAAAGGGCACACGAATGGATT
GCAATCCCTGGTGTTTAACCGAGCAGGCACCCTCTTAGCTTCTTGCTCCA
GCGACCTTAGCATCAAGATTTGGGATTTCGGTCCCTCAGCGACCGTGCCT
GACTGCCTTCGAACGCTCCGAGGCCACGACCATAACATCTCTGGCTTGAT
TTTTTTAGGGCCATCGGACGCGCAGCTTGTGTCGTGCTCCCGGGACACGA
CTGTGAAGATATGGGAGGTTAGCACAGGGTATTGCTTGCGGACATTGACG
GAAGGACACACGGACTGGGTGCGTTGCTTGGCTGCAAGTGAGGATGGCGC
TCTTGTGGCGAGTGGAGGAAATGATCAGACAATTGTGGTGTGGAATTTGT
CGACGGGCTCACCGACCTTGACGCTACGGGAGCACACGCACGTGGTGGAG
AGTTTGGCGTTTCCGCCCGTCGGGACGGAGGTGAAGTTGGACGACAAATG
CAGCAGCAGCAGTAGTAGCAGCAGCAGCAGCACCACCACCAATACTACTA
CCATTGGGAAAGCGGGTAATAGTATCAGCGGCCGAGCTGTGCGTGCTTAT
TTGGTGTCGGGTGGGCGGGATAAGACTGTCAAGCTATGGGACGCCGTGAC
GGGCCAATGTCTCTCGACCTTTTCTGACCACGATAACTGGGTACGTTCCG
TCTGTTTCCACCCCTCTGGACAATATATCTTGAGCGTTTCGGATGACAGA
AGCATGCGTGTTTTTGATATTGCCAGGGCACGGTGTGTCCGCACAATAGC
GGACGCACACAGTCAGTTTGTGACTGCGCTGACACAGCACGTGGTCTTGC
CCTATGTGGCGACAGGGAGCGTAGATAGAGAGATAAAGGTGTGGGAGTGC
CGGTAGATGCTGACGGAGCGACAAAAGGCGGACCTGCATGTGGCCATCCT
GGAGTACCTGCGCGACGGCGGGAAAGGCCTAGCACAGTCCGCAGAGTCCT
TTGCCCGGGAAGTTGGCCTGGAAACGGCCGACGTCCCTAAGTCCACAGGT
ACCCTGGAAAAGAAATGGACCGCAGTGGTGCGCCTGCAAAAAAAAGTCAT
GGAGCTCGAAGAGCGCCTTGCAAACACCGAGCAAGAGCTCAAGACCTCGC
GGTTTCATCCTTATGGTGTGGTGGGTGTGCGGCCGCTGGCTGCCGGCGGG
GCTCGCAACCTGCCTCGTGCCCCGGCAGTGCAGACGCTTGTGGGCCATCG
TGGCGGCGTGACATGTCTGACGACGCACCCCGTCTTTGCCCTACTCGTCT
CCGGGAGCGAAGATTCTACGATTAAAACCTGGGATTTGGAGAGCGGGGTG
TATGAAAAGACATTGAAAGGGCACACGAATGGATTGCAATCCCTGGTGTT
TAACCGAGCAGGCACCCTCTTAGCTTCTTGCTCCAGCGACCTTAGCATCA
AGATTTGGGATTTCGGTCCCTCAGCGACCGTGCCTGACTGCCTTCGAACG
CTCCGAGGCCACGACCATAACATCTCTGGCTTGATTTTTTTAGGGCCATC
GGACGCGCAGCTTGTGTCGTGCTCCCGGGACACGACTGTGAAGATATGGG
AGGTTAGCACAGGGTATTGCTTGCGGACATTGACGGAAGGACACACGGAC
TGGGTGCGTTGCTTGGCTGCAAGTGAGGATGGCGCTCTTGTGGCGAGTGG
AGGAAATGATCAGACAATTGTGGTGTGGAATTTGTCGACGGGCTCACCGA
CCTTGACGCTACGGGAGCACACGCACGTGGTGGAGAGTTTGGCGTTTCCG
CCCGTCGGGACGGAGGTGAAGTTGGACGACAAATGCAGCAGCAGCAGTAG
TAGCAGCAGCAGCAGCACCACCACCAATACTACTACCATTGGGAAAGCGG
GTAATAGTATCAGCGGCCGAGCTGTGCGTGCTTATTTGGTGTCGGGTGGG
CGGGATAAGACTGTCAAGCTATGGGACGCCGTGACGGGCCAATGTCTCTC
GACCTTTTCTGACCACGATAACTGGGTACGTTCCGTCTGTTTCCACCCCT
CTGGACAATATATCTTGAGCGTTTCGGATGACAGAAGCATGCGTGTTTTT
GATATTGCCAGGGCACGGTGTGTCCGCACAATAGCGGACGCACACAGTCA
GTTTGTGACTGCGCTGACACAGCACGTGGTCTTGCCCTATGTGGCGACAG
GGAGCGTAGATAGAGAGATAAAGGTGTGGGAGTGCCGGTAGATGCTGACG
GAGCGACAAAAGGCGGACCT
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Synonyms
Publications