jgi.p|Nanoce1779_2|599724, mRNA_7703 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599724
Unique Name	mRNA_7703
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1959
Alignment location	scaffold_21:119725..121786 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599810
Track	FilteredModels2
ProteinId	599724

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:119725..121786 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599724	gene_7703	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599724	mRNA_7703-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7703	CDS_7703	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:119725..121786+
coding sequence from alignment at scaffold_21:119725..121786+

mRNA sequence

>mRNA_7703 ID=mRNA_7703|Name=jgi.p|Nanoce1779_2|599724|organism=Nannochloropsis oceanica|type=mRNA|length=1959bp
ACAGGAACTATAGAGCCTGGGGAACGCCGACGGTAGGGAGCCAGTGACTC
CAAGCAGCACAAGGCACCATCCGATCAAGAAGCTACACCTGAGGGGGTAA
TGCTGCGGCGGGGCGGAGCATTGTGGCGGGGGGCCCACTACCATTCAGGC
ACCAGGGTACGGCAGCCAGCGCTGGTGGCCCTACTATTGCAGCAGCAGGG
TTTGACGCCACCAGCACCCGGCAGCATCAGCAACTTGTCGGGAGCGCGGC
GGGCCTTGGCGGGAGGCTTCTTTGATCAACTTAAAAAGTCATTCAATAAG
GAGGTGGAGCAAAACAAGGAGTTCAAGGAGAGTCTGTCGAAGCTCCGGAA
GGAGACTGGGGACCTGACGGACAAGACGTTCAAGCTGACGGATAGCGTGC
AGAAGTACTCGTCTGCGTTTTCCACCCGCTTGAGCGAGACAACCGAAACG
CTAAGCAAGAGCTCGCAGGCTGTCGTGTCTCAGCTCAAGGAGAAGATGGC
GGCGGCGCAGCAGGGGCAAGAGAAGGAAAAAGAGGAAGAGGGAGGGGACG
CAGGAGCCAGGGGTGCCGCTGCAGCTGCAAGGCCTACGGAGGAGAGTAAG
GCACCAAGTGTCGAGTCTACGGCAGAGACTGTGCGAGCAGAGGGAGATGT
AGAATCACAACCACTGTCATCGGCCTCGACAAGCACCCAGAGGAGAAGAG
AAGAGAAGGTAGGAGATGAAGCAGGTGGAGAGGGAACAGTCAAGACCTCC
ACTTCTGGAGCCCACAATGAAGAAAGCAAGGGAGGAGGAGTTGGAGAGGA
AGCCAAAGATGACTCCTCTTCCTCCTCTTCCACCAACGGCGGAAGCACCA
GTAGCACGGCAGCCTCCGCAGATGGGGATAGTTTCTACACGCGCTGGCTG
GCAGGACGGCCACCCAGGGAGGCAGCTAGAGCCTGGACCCAAGACTTTAA
AGTGGGTTTGAAGGAGGCTTTCGCGGACTTATTTGGCATGCAAGAAAAGA
GCACCGGTATGAAGAAGCACATCTACCAGCATTCCTCCACGGACGCAGCA
GCAGCGGCCGCAGCCGCCGACAAAGTGGATGAAGAGAAGGATGACGAGGC
GGAGGAAGCCGAGAAGAAGGCAGTGGGGCGCGGTGCGCTTGTGGTGGTTA
AGCAGCAGCAGAAGACTTGGGAGCGACTGGCAGAACAATTGAAGGACGCA
CCGATCATTCAGGAAATCCTTAAGGCAGGGACTAAGCTGGCCGATACCGA
GCTGGGTCGACAGGCAGGAAAGCTGAGGGGAAAGCTTAACGACAGGGTAG
AGGACGCTAGGGAGATGTGGGAGACGAGTCAAAACCCATTGGTGTACAAG
TTGTCGTCGATGTGGGATGACTTGACCTCAGAAACCGAGCTGGGGATAGC
GTTACGGGAGATCAGGCGGGCCGACCCAGAGTTTGTCATGGAGGATTGGG
TGGGTACGCTCACGGAGTCGTTTTTGCCTTTGTTTTTTAAGGCCTACCTG
AAGGGAGATCTGAAGACGTTGAAGCCCTATCTGTCGGAGGGGATGTACAA
GCAGATGGCGGAGGAGTTTAGGTTGAGGAAGGCGGAGGGGTTGGCACTTG
ACCCCCATGTGCTGGAGATAAGCAATGCCGAGATTGTTCAGGCGAAAATT
CACGATCATCAACCTGTTCTGGTGCTTGGAACCTTGATTCAGCATATCAA
CTGTGTGCGAAACCGCGAGGGAAAAATTGTGGAGGGGAAGGAAGATGAGG
TCCGCGCGTCGTTTTACCTGCTGTTGTTTGTGCGGGAGTATGATGAGAAG
GAGGGGGCCCTGCAGTGGAAGATCCAGGAGCGATACCTTGGCTTCTCCCA
GCCCTTCATTTAGGGAGGACGATGGGTGGTTGGTAAGCTTAGATGTCAAG
AGCCAGAGTGGAGGGGAGCCGCAGAGGGTAAGACCGAAGCAAAAAGGGCT
GTTCTGATA

protein sequence of jgi.p|Nanoce1779_2|599724

>mRNA_7703-protein ID=mRNA_7703-protein|Name=jgi.p|Nanoce1779_2|599724|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MLRRGGALWRGAHYHSGTRVRQPALVALLLQQQGLTPPAPGSISNLSGAR
RALAGGFFDQLKKSFNKEVEQNKEFKESLSKLRKETGDLTDKTFKLTDSV
QKYSSAFSTRLSETTETLSKSSQAVVSQLKEKMAAAQQGQEKEKEEEGGD
AGARGAAAAARPTEESKAPSVESTAETVRAEGDVESQPLSSASTSTQRRR
EEKVGDEAGGEGTVKTSTSGAHNEESKGGGVGEEAKDDSSSSSSTNGGST
SSTAASADGDSFYTRWLAGRPPREAARAWTQDFKVGLKEAFADLFGMQEK
STGMKKHIYQHSSTDAAAAAAAADKVDEEKDDEAEEAEKKAVGRGALVVV
KQQQKTWERLAEQLKDAPIIQEILKAGTKLADTELGRQAGKLRGKLNDRV
EDAREMWETSQNPLVYKLSSMWDDLTSETELGIALREIRRADPEFVMEDW
VGTLTESFLPLFFKAYLKGDLKTLKPYLSEGMYKQMAEEFRLRKAEGLAL
DPHVLEISNAEIVQAKIHDHQPVLVLGTLIQHINCVRNREGKIVEGKEDE
VRASFYLLLFVREYDEKEGALQWKIQERYLGFSQPFI*

mRNA from alignment at scaffold_21:119725..121786+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7703 ID=mRNA_7703|Name=jgi.p|Nanoce1779_2|599724|organism=Nannochloropsis oceanica|type=mRNA|length=2062bp|location=Sequence derived from alignment at scaffold_21:119725..121786+ (Nannochloropsis oceanica)
ACAGGAACTATAGAGCCTGGGGAACGCCGACGGTAGGGAGCCAGTGACTC
CAAGCAGCACAAGGCACCATCCGATCAAGAAGCTACACCTGAGGGGGTAA
TGCTGCGGCGGGGCGGAGCATTGTGGCGGGGGGCCCACTACCATTCAGGT
GTGTACGTATGTGAAACGAGCAATGCGGATACATGAGGCAGCGTTTGTGC
AACCGTGTTATGTGTTTCACGTTAACTTAATCCTTTTTTGCATCTGCTCA
GGCACCAGGGTACGGCAGCCAGCGCTGGTGGCCCTACTATTGCAGCAGCA
GGGTTTGACGCCACCAGCACCCGGCAGCATCAGCAACTTGTCGGGAGCGC
GGCGGGCCTTGGCGGGAGGCTTCTTTGATCAACTTAAAAAGTCATTCAAT
AAGGAGGTGGAGCAAAACAAGGAGTTCAAGGAGAGTCTGTCGAAGCTCCG
GAAGGAGACTGGGGACCTGACGGACAAGACGTTCAAGCTGACGGATAGCG
TGCAGAAGTACTCGTCTGCGTTTTCCACCCGCTTGAGCGAGACAACCGAA
ACGCTAAGCAAGAGCTCGCAGGCTGTCGTGTCTCAGCTCAAGGAGAAGAT
GGCGGCGGCGCAGCAGGGGCAAGAGAAGGAAAAAGAGGAAGAGGGAGGGG
ACGCAGGAGCCAGGGGTGCCGCTGCAGCTGCAAGGCCTACGGAGGAGAGT
AAGGCACCAAGTGTCGAGTCTACGGCAGAGACTGTGCGAGCAGAGGGAGA
TGTAGAATCACAACCACTGTCATCGGCCTCGACAAGCACCCAGAGGAGAA
GAGAAGAGAAGGTAGGAGATGAAGCAGGTGGAGAGGGAACAGTCAAGACC
TCCACTTCTGGAGCCCACAATGAAGAAAGCAAGGGAGGAGGAGTTGGAGA
GGAAGCCAAAGATGACTCCTCTTCCTCCTCTTCCACCAACGGCGGAAGCA
CCAGTAGCACGGCAGCCTCCGCAGATGGGGATAGTTTCTACACGCGCTGG
CTGGCAGGACGGCCACCCAGGGAGGCAGCTAGAGCCTGGACCCAAGACTT
TAAAGTGGGTTTGAAGGAGGCTTTCGCGGACTTATTTGGCATGCAAGAAA
AGAGCACCGGTATGAAGAAGCACATCTACCAGCATTCCTCCACGGACGCA
GCAGCAGCGGCCGCAGCCGCCGACAAAGTGGATGAAGAGAAGGATGACGA
GGCGGAGGAAGCCGAGAAGAAGGCAGTGGGGCGCGGTGCGCTTGTGGTGG
TTAAGCAGCAGCAGAAGACTTGGGAGCGACTGGCAGAACAATTGAAGGAC
GCACCGATCATTCAGGAAATCCTTAAGGCAGGGACTAAGCTGGCCGATAC
CGAGCTGGGTCGACAGGCAGGAAAGCTGAGGGGAAAGCTTAACGACAGGG
TAGAGGACGCTAGGGAGATGTGGGAGACGAGTCAAAACCCATTGGTGTAC
AAGTTGTCGTCGATGTGGGATGACTTGACCTCAGAAACCGAGCTGGGGAT
AGCGTTACGGGAGATCAGGCGGGCCGACCCAGAGTTTGTCATGGAGGATT
GGGTGGGTACGCTCACGGAGTCGTTTTTGCCTTTGTTTTTTAAGGCCTAC
CTGAAGGGAGATCTGAAGACGTTGAAGCCCTATCTGTCGGAGGGGATGTA
CAAGCAGATGGCGGAGGAGTTTAGGTTGAGGAAGGCGGAGGGGTTGGCAC
TTGACCCCCATGTGCTGGAGATAAGCAATGCCGAGATTGTTCAGGCGAAA
ATTCACGATCATCAACCTGTTCTGGTGCTTGGAACCTTGATTCAGCATAT
CAACTGTGTGCGAAACCGCGAGGGAAAAATTGTGGAGGGGAAGGAAGATG
AGGTCCGCGCGTCGTTTTACCTGCTGTTGTTTGTGCGGGAGTATGATGAG
AAGGAGGGGGCCCTGCAGTGGAAGATCCAGGAGCGATACCTTGGCTTCTC
CCAGCCCTTCATTTAGGGAGGACGATGGGTGGTTGGTAAGCTTAGATGTC
AAGAGCCAGAGTGGAGGGGAGCCGCAGAGGGTAAGACCGAAGCAAAAAGG
GCTGTTCTGATA

Coding sequence (CDS) from alignment at scaffold_21:119725..121786+

>mRNA_7703 ID=mRNA_7703|Name=jgi.p|Nanoce1779_2|599724|organism=Nannochloropsis oceanica|type=CDS|length=3528bp|location=Sequence derived from alignment at scaffold_21:119725..121786+ (Nannochloropsis oceanica)
ATGCTGCGGCGGGGCGGAGCATTGTGGCGGGGGGCCCACTACCATTCAGG
CACCAGGGTACGGCAGCCAGCGCTGGTGGCCCTACTATTGCAGCAGCAGG
GTTTGACGCCACCAGCACCCGGCAGCATCAGCAACTTGTCGGGAGCGCGG
CGGGCCTTGGCGGGAGGCTTCTTTGATCAACTTAAAAAGTCATTCAATAA
GGAGGTGGAGCAAAACAAGGAGTTCAAGGAGAGTCTGTCGAAGCTCCGGA
AGGAGACTGGGGACCTGACGGACAAGACGTTCAAGCTGACGGATAGCGTG
CAGAAGTACTCGTCTGCGTTTTCCACCCGCTTGAGCGAGACAACCGAAAC
GCTAAGCAAGAGCTCGCAGGCTGTCGTGTCTCAGCTCAAGGAGAAGATGG
CGGCGGCGCAGCAGGGGCAAGAGAAGGAAAAAGAGGAAGAGGGAGGGGAC
GCAGGAGCCAGGGGTGCCGCTGCAGCTGCAAGGCCTACGGAGGAGAGTAA
GGCACCAAGTGTCGAGTCTACGGCAGAGACTGTGCGAGCAGAGGGAGATG
TAGAATCACAACCACTGTCATCGGCCTCGACAAGCACCCAGAGGAGAAGA
GAAGAGAAGGTAGGAGATGAAGCAGGTGGAGAGGGAACAGTCAAGACCTC
CACTTCTGGAGCCCACAATGAAGAAAGCAAGGGAGGAGGAGTTGGAGAGG
AAGCCAAAGATGACTCCTCTTCCTCCTCTTCCACCAACGGCGGAAGCACC
AGTAGCACGGCAGCCTCCGCAGATGGGGATAGTTTCTACACGCGCTGGCT
GGCAGGACGGCCACCCAGGGAGGCAGCTAGAGCCTGGACCCAAGACTTTA
AAGTGGGTTTGAAGGAGGCTTTCGCGGACTTATTTGGCATGCAAGAAAAG
AGCACCGGTATGAAGAAGCACATCTACCAGCATTCCTCCACGGACGCAGC
AGCAGCGGCCGCAGCCGCCGACAAAGTGGATGAAGAGAAGGATGACGAGG
CGGAGGAAGCCGAGAAGAAGGCAGTGGGGCGCGGTGCGCTTGTGGTGGTT
AAGCAGCAGCAGAAGACTTGGGAGCGACTGGCAGAACAATTGAAGGACGC
ACCGATCATTCAGGAAATCCTTAAGGCAGGGACTAAGCTGGCCGATACCG
AGCTGGGTCGACAGGCAGGAAAGCTGAGGGGAAAGCTTAACGACAGGGTA
GAGGACGCTAGGGAGATGTGGGAGACGAGTCAAAACCCATTGGTGTACAA
GTTGTCGTCGATGTGGGATGACTTGACCTCAGAAACCGAGCTGGGGATAG
CGTTACGGGAGATCAGGCGGGCCGACCCAGAGTTTGTCATGGAGGATTGG
GTGGGTACGCTCACGGAGTCGTTTTTGCCTTTGTTTTTTAAGGCCTACCT
GAAGGGAGATCTGAAGACGTTGAAGCCCTATCTGTCGGAGGGGATGTACA
AGCAGATGGCGGAGGAGTTTAGGTTGAGGAAGGCGGAGGGGTTGGCACTT
GACCCCCATGTGCTGGAGATAAGCAATGCCGAGATTGTTCAGGCGAAAAT
TCACGATCATCAACCTGTTCTGGTGCTTGGAACCTTGATTCAGCATATCA
ACTGTGTGCGAAACCGCGAGGGAAAAATTGTGGAGGGGAAGGAAGATGAG
GTCCGCGCGTCGTTTTACCTGCTGTTGTTTGTGCGGGAGTATGATGAGAA
GGAGGGGGCCCTGCAGTGGAAGATCCAGGAGCGATACCTTGGCTTCTCCC
AGCCCTTCATTTAGATGCTGCGGCGGGGCGGAGCATTGTGGCGGGGGGCC
CACTACCATTCAGGCACCAGGGTACGGCAGCCAGCGCTGGTGGCCCTACT
ATTGCAGCAGCAGGGTTTGACGCCACCAGCACCCGGCAGCATCAGCAACT
TGTCGGGAGCGCGGCGGGCCTTGGCGGGAGGCTTCTTTGATCAACTTAAA
AAGTCATTCAATAAGGAGGTGGAGCAAAACAAGGAGTTCAAGGAGAGTCT
GTCGAAGCTCCGGAAGGAGACTGGGGACCTGACGGACAAGACGTTCAAGC
TGACGGATAGCGTGCAGAAGTACTCGTCTGCGTTTTCCACCCGCTTGAGC
GAGACAACCGAAACGCTAAGCAAGAGCTCGCAGGCTGTCGTGTCTCAGCT
CAAGGAGAAGATGGCGGCGGCGCAGCAGGGGCAAGAGAAGGAAAAAGAGG
AAGAGGGAGGGGACGCAGGAGCCAGGGGTGCCGCTGCAGCTGCAAGGCCT
ACGGAGGAGAGTAAGGCACCAAGTGTCGAGTCTACGGCAGAGACTGTGCG
AGCAGAGGGAGATGTAGAATCACAACCACTGTCATCGGCCTCGACAAGCA
CCCAGAGGAGAAGAGAAGAGAAGGTAGGAGATGAAGCAGGTGGAGAGGGA
ACAGTCAAGACCTCCACTTCTGGAGCCCACAATGAAGAAAGCAAGGGAGG
AGGAGTTGGAGAGGAAGCCAAAGATGACTCCTCTTCCTCCTCTTCCACCA
ACGGCGGAAGCACCAGTAGCACGGCAGCCTCCGCAGATGGGGATAGTTTC
TACACGCGCTGGCTGGCAGGACGGCCACCCAGGGAGGCAGCTAGAGCCTG
GACCCAAGACTTTAAAGTGGGTTTGAAGGAGGCTTTCGCGGACTTATTTG
GCATGCAAGAAAAGAGCACCGGTATGAAGAAGCACATCTACCAGCATTCC
TCCACGGACGCAGCAGCAGCGGCCGCAGCCGCCGACAAAGTGGATGAAGA
GAAGGATGACGAGGCGGAGGAAGCCGAGAAGAAGGCAGTGGGGCGCGGTG
CGCTTGTGGTGGTTAAGCAGCAGCAGAAGACTTGGGAGCGACTGGCAGAA
CAATTGAAGGACGCACCGATCATTCAGGAAATCCTTAAGGCAGGGACTAA
GCTGGCCGATACCGAGCTGGGTCGACAGGCAGGAAAGCTGAGGGGAAAGC
TTAACGACAGGGTAGAGGACGCTAGGGAGATGTGGGAGACGAGTCAAAAC
CCATTGGTGTACAAGTTGTCGTCGATGTGGGATGACTTGACCTCAGAAAC
CGAGCTGGGGATAGCGTTACGGGAGATCAGGCGGGCCGACCCAGAGTTTG
TCATGGAGGATTGGGTGGGTACGCTCACGGAGTCGTTTTTGCCTTTGTTT
TTTAAGGCCTACCTGAAGGGAGATCTGAAGACGTTGAAGCCCTATCTGTC
GGAGGGGATGTACAAGCAGATGGCGGAGGAGTTTAGGTTGAGGAAGGCGG
AGGGGTTGGCACTTGACCCCCATGTGCTGGAGATAAGCAATGCCGAGATT
GTTCAGGCGAAAATTCACGATCATCAACCTGTTCTGGTGCTTGGAACCTT
GATTCAGCATATCAACTGTGTGCGAAACCGCGAGGGAAAAATTGTGGAGG
GGAAGGAAGATGAGGTCCGCGCGTCGTTTTACCTGCTGTTGTTTGTGCGG
GAGTATGATGAGAAGGAGGGGGCCCTGCAGTGGAAGATCCAGGAGCGATA
CCTTGGCTTCTCCCAGCCCTTCATTTAG

Synonyms

Publications