jgi.p|Nanoce1779_2|166862, mRNA_7702 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|166862
Unique NamemRNA_7702
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length472
Alignment locationscaffold_21:119114..119754 -

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Properties
Property NameValue
TranscriptId166948
TrackFilteredModels2
ProteinId166862
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:119114..119754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|166862gene_7702Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|166862mRNA_7702-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7702CDS_7702Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7702 ID=mRNA_7702|Name=jgi.p|Nanoce1779_2|166862|organism=Nannochloropsis oceanica|type=mRNA|length=472bp
TCGGCGTTCCCCAGGCTCTATAGTTCCTGTGATGGGACGGAGAGAGGGTC
GTGAAAGCTTAATACCGCTTTAAAAGAGTTCTGGGCCAGTCGCAATAATC
TCAAGAAGGATACTTGTGCCTGTGCGGCGCTGAGAAGAGCGATGATGACG
ATCGCGACCACACTATGCCCCTACGCTCTATGCTGCTTTACGTGCATCAC
AATCAGCCAACCGTACCGTATCCAGCCGAAGAATCACAATCTCACTTCTA
TTGCTTCCACTCATTCGTATCTACAGCGACGCCACGACCATCGTCCCTTT
CCGCTCCCAACATTCTCAGCACTAGATACTGCGCCCTTTGTTAGGGAAGG
AATAGGAACGAGTACACCGTCAAGGTACAGACGCTAGATAGTAAGATGGA
GGCACTTCTAGGCCGTGTCGCAAGACTAGGCGCTGGTGTGGCAGGGGCAG
CTTTTGTGGGCAACAACTTTTT
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protein sequence of jgi.p|Nanoce1779_2|166862

>mRNA_7702-protein ID=mRNA_7702-protein|Name=jgi.p|Nanoce1779_2|166862|organism=Nannochloropsis oceanica|type=polypeptide|length=82bp
MMTIATTLCPYALCCFTCITISQPYRIQPKNHNLTSIASTHSYLQRRHDH
RPFPLPTFSALDTAPFVREGIGTSTPSRYRR*
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mRNA from alignment at scaffold_21:119114..119754-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7702 ID=mRNA_7702|Name=jgi.p|Nanoce1779_2|166862|organism=Nannochloropsis oceanica|type=mRNA|length=641bp|location=Sequence derived from alignment at scaffold_21:119114..119754- (Nannochloropsis oceanica)
TCGGCGTTCCCCAGGCTCTATAGTTCCTGTGATGGGACGGAGAGAGGGTC
GTGAAAGCTTAATACCGCTTTAAAAGAGTTCTGGGCCAGTCGCAATAATC
TCAAGAAGGATACTTGTGCCTGTGCGGCGCTGAGAAGAGCGATGATGACG
ATCGCGACCACACTATGCCCCTACGCTCTATGCTGCTTTACGTGCATCAC
AATCAGCCAACCGTACCGTATCCAGCCGAAGAATCACAATCTCACTTCTA
TTGCTTCCACTCATTCGTATCTACAGCGACGCCACGACCATCGTCCCTTT
CCGCTCCCAACATTCTCAGCACTAGATACTGCGCCCTTTGTTAGGGAAGG
AATAGGAACGAGTACACCGTCAAGGTACGCATTCTCGTCATGAGCGACCA
TCACGTATATGCCTCTCCAGTTACTTGATCAAGAGCCGTGGGGCTCTGCT
GGACGAGTGAAAAAATGCAGTGAGAAAGGAAAAGCACCCGCATCATTATC
GTTATCATGACTCACTCATCCCTTCCTCCCTGTCACACCACAGGTACAGA
CGCTAGATAGTAAGATGGAGGCACTTCTAGGCCGTGTCGCAAGACTAGGC
GCTGGTGTGGCAGGGGCAGCTTTTGTGGGCAACAACTTTTT
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Coding sequence (CDS) from alignment at scaffold_21:119114..119754-

>mRNA_7702 ID=mRNA_7702|Name=jgi.p|Nanoce1779_2|166862|organism=Nannochloropsis oceanica|type=CDS|length=492bp|location=Sequence derived from alignment at scaffold_21:119114..119754- (Nannochloropsis oceanica)
GTACAGACGCTAGATGATGACGATCGCGACCACACTATGCCCCTACGCTC
TATGCTGCTTTACGTGCATCACAATCAGCCAACCGTACCGTATCCAGCCG
AAGAATCACAATCTCACTTCTATTGCTTCCACTCATTCGTATCTACAGCG
ACGCCACGACCATCGTCCCTTTCCGCTCCCAACATTCTCAGCACTAGATA
CTGCGCCCTTTGTTAGGGAAGGAATAGGAACGAGTACACCGTCAAGGTAC
AGACGCTAGATGATGACGATCGCGACCACACTATGCCCCTACGCTCTATG
CTGCTTTACGTGCATCACAATCAGCCAACCGTACCGTATCCAGCCGAAGA
ATCACAATCTCACTTCTATTGCTTCCACTCATTCGTATCTACAGCGACGC
CACGACCATCGTCCCTTTCCGCTCCCAACATTCTCAGCACTAGATACTGC
GCCCTTTGTTAGGGAAGGAATAGGAACGAGTACACCGTCAAG
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Synonyms
Publications