jgi.p|Nanoce1779_2|599717, mRNA_7700 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599717
Unique Name	mRNA_7700
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2383
Alignment location	scaffold_21:115597..117979 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599803
Track	FilteredModels2
ProteinId	599717

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:115597..117979 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599717	gene_7700	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599717	mRNA_7700-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7700	CDS_7700	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:115597..117979+
coding sequence from alignment at scaffold_21:115597..117979+

mRNA sequence

>mRNA_7700 ID=mRNA_7700|Name=jgi.p|Nanoce1779_2|599717|organism=Nannochloropsis oceanica|type=mRNA|length=2383bp
ACAGGCTTGATCACGCCGCTGGAGTGCATCATGTCCTCTCCTCGGTGGCG
GTACGTCGCAGCAGCAGCCCTCTTCTTCTTGTCCGGCCTGACCGCCACAG
TCGACTCCTTTCCAGTACTGAGGTGCCCGCCATCCCCCCCCTCCTCTTCA
TCCAGCTCCTCGGCATCTGCCGCAAGAACGTCAGCGTCCTTAGCATTAAA
TCAACACTCCTGTAAGCTCCCTTCTTCCTCCACCTCAACTCGCCCAGCCT
CCGGTCTCAGCATGCTGGCGAGTAGCATCGCTAGCACGATATGTCGCACG
GTTAGTGGCGGCAACATGGCCATTTACCTCGTGGGTGCGACCAATCAGCG
GATAGCGGTCGCGGAGGCCGTGAGCAAGGCGGTGGGCTGGCCAGTGGTCA
AGGCTACGAGTACTGCCGCCCTCCTTTCTTCGCCCTCCATTCCTGCTATC
GTTGACGTGGACGACTCTACGATAGCTGATGCGAAGGGCGCTGAGTTCCT
GGAGGCGCAGCCACTCGTCATCCAGCTGGTGGAGATGGAAGATTTCGCTG
ACAACGACGAGAAGCATAAGAGCCGGCAGGCCGTGAGTCGTTTTGACGTA
GCCGTCGGCTCGGAGCCTGACGTCCCGCTCGCCCAAATAGTCCAGTCCAT
CCGACACATCACCCGCCTATCGGATGGTTTCGGAGACGGTACAATCGATG
CAAACCTTAACCTCGACCTGGGGGCTAACACCTTCTTCCTCTCCCTCACC
TTTCCCGACATGCGGGAATGCCTCCCCCTCCTCCCGGGCCTTGAACGGGG
GGTGGACGCGTTGGAGCTTCGCGTGGACCTCCTACAAGACCGTACCCCCT
GGAGCATCCTTCGCCAGGTTGCCATTTTGAAGTCTGCTACACAGCTCCCA
ATCATCTACACCGTACGCTCCAAAGACCAATGCGGCGCCTTCCCTAACGA
CGCCGAAGCCATTTTCAAGCTCCTCGGCCTGGGTTTACGAGCAGGTGTTG
AAGTCTTGGATGTGGAGGCGTGCTGGGACCGGAAGATACGAAGTCACTTG
CTGGATGCAGCGTGGCGTAGCTATAGGGGTACTACCCGTCTTTTGGGTTC
GTATCACGTTGTGGGTCGTTCGACAACTGATCAGGAGGCACTACGGATTT
TTCAAGAGTGCTTCCATGATGGGAGGGTGGATGCTGTTAAGGTTGTTTTG
ACTGCGAATTCGATGCGCGATGCGTATCATGTGCATGAACTAGCGGCTGC
GGCGGGGCTGCCAGCGTCGGTGCCTGTGGTGGCGTTGTGCTTGGGGGAGG
TGGGGAAATTGAGTCGGGTTTTGAACAGTAGATATACACCCGTTACAAAC
AAGCTTCTGCCTTATGTCGCCGCTCCCGGTCAGTTGACTGCGGGAGAGAT
CATGAATTTTAGGAGGGATCTTGGCATGGTCCCCTCGGCATCGTTCTGTT
TGTTGGGGCATCCTATTTCGAAGTCGCCGTCGCCTGCCATGCATAACGCG
GCCTTTCAACACTGTCTGTTACCCCACACCTATTCCCTCTTCGAGACGGA
AGACGTCCTTGATCTCAAAGCCAAATACTCAGATCAAAATGCGCAGTCCT
TCGGGGGTTGTTCTGTCACTATCCCTCATAAGCAAGCTGTGATTCCCTTG
CTTCATCGTGTATCGCCCTCCGTGGACGCCATCGGTGCAGTCAACACAGT
GGTTGTCGAGCGAGAGGCAGGCACGGGGCAACTCCGCTGGGTGGGGCACA
ATACAGATTGGAAGGGGATCGTGAAGCCCATTGTTCAACGTCTTCGAGAG
ACGGGTCGAGGGGTAACGGACGCGGAGGGGCGGCCTCGAGTGGCCCTTGT
CGTGGGGGGAGGAGGGACGGCGCTTGCGGCAGCGTATGGCATGACCTCCC
TGGGGCTACGCCTGCTTGTCTTCAATCGCACCCCGAGCAAGGCTCAGGAT
GTCGCCGCGCGCTTTGGAGGGACGGTAGTGCATGCCCTGACGCCTGAATC
TATCCTGGAAGCGACGGGTGGCCAGCAAGGAGGTATAGATGTAGTTGTCT
CCACCATTCCTTCTACCGCCGGCTTCCTCCTACCCCCCTCTCTGCTGCGA
GCACAACCAGTGGTTATGGACGTGGCATACCGCCCAGCGGAAACGGCGCT
ACTGGCACAGGCTCGCGAGGCGGGATGCCCATTCGTCCAGGGAGCCGAAA
TGTTGATTGCGCAGGGGGTGGAGCAGTTCCAGTTGTGGACTAAGAGGCGG
GCACCTGAGGCAGTGATGCGGGCAGCGGTCTATGCCACGGTGGAGGAGTT
GAAGTAGGACGGTGAGGGGGAAACGGAGCAATGAATTGTATTTAAAAGTA
GTAAATGGTCATGAGATGAATCACAACGACGGG

protein sequence of jgi.p|Nanoce1779_2|599717

>mRNA_7700-protein ID=mRNA_7700-protein|Name=jgi.p|Nanoce1779_2|599717|organism=Nannochloropsis oceanica|type=polypeptide|length=759bp
MSSPRWRYVAAAALFFLSGLTATVDSFPVLRCPPSPPSSSSSSSASAART
SASLALNQHSCKLPSSSTSTRPASGLSMLASSIASTICRTVSGGNMAIYL
VGATNQRIAVAEAVSKAVGWPVVKATSTAALLSSPSIPAIVDVDDSTIAD
AKGAEFLEAQPLVIQLVEMEDFADNDEKHKSRQAVSRFDVAVGSEPDVPL
AQIVQSIRHITRLSDGFGDGTIDANLNLDLGANTFFLSLTFPDMRECLPL
LPGLERGVDALELRVDLLQDRTPWSILRQVAILKSATQLPIIYTVRSKDQ
CGAFPNDAEAIFKLLGLGLRAGVEVLDVEACWDRKIRSHLLDAAWRSYRG
TTRLLGSYHVVGRSTTDQEALRIFQECFHDGRVDAVKVVLTANSMRDAYH
VHELAAAAGLPASVPVVALCLGEVGKLSRVLNSRYTPVTNKLLPYVAAPG
QLTAGEIMNFRRDLGMVPSASFCLLGHPISKSPSPAMHNAAFQHCLLPHT
YSLFETEDVLDLKAKYSDQNAQSFGGCSVTIPHKQAVIPLLHRVSPSVDA
IGAVNTVVVEREAGTGQLRWVGHNTDWKGIVKPIVQRLRETGRGVTDAEG
RPRVALVVGGGGTALAAAYGMTSLGLRLLVFNRTPSKAQDVAARFGGTVV
HALTPESILEATGGQQGGIDVVVSTIPSTAGFLLPPSLLRAQPVVMDVAY
RPAETALLAQAREAGCPFVQGAEMLIAQGVEQFQLWTKRRAPEAVMRAAV
YATVEELK*

mRNA from alignment at scaffold_21:115597..117979+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7700 ID=mRNA_7700|Name=jgi.p|Nanoce1779_2|599717|organism=Nannochloropsis oceanica|type=mRNA|length=2383bp|location=Sequence derived from alignment at scaffold_21:115597..117979+ (Nannochloropsis oceanica)
ACAGGCTTGATCACGCCGCTGGAGTGCATCATGTCCTCTCCTCGGTGGCG
GTACGTCGCAGCAGCAGCCCTCTTCTTCTTGTCCGGCCTGACCGCCACAG
TCGACTCCTTTCCAGTACTGAGGTGCCCGCCATCCCCCCCCTCCTCTTCA
TCCAGCTCCTCGGCATCTGCCGCAAGAACGTCAGCGTCCTTAGCATTAAA
TCAACACTCCTGTAAGCTCCCTTCTTCCTCCACCTCAACTCGCCCAGCCT
CCGGTCTCAGCATGCTGGCGAGTAGCATCGCTAGCACGATATGTCGCACG
GTTAGTGGCGGCAACATGGCCATTTACCTCGTGGGTGCGACCAATCAGCG
GATAGCGGTCGCGGAGGCCGTGAGCAAGGCGGTGGGCTGGCCAGTGGTCA
AGGCTACGAGTACTGCCGCCCTCCTTTCTTCGCCCTCCATTCCTGCTATC
GTTGACGTGGACGACTCTACGATAGCTGATGCGAAGGGCGCTGAGTTCCT
GGAGGCGCAGCCACTCGTCATCCAGCTGGTGGAGATGGAAGATTTCGCTG
ACAACGACGAGAAGCATAAGAGCCGGCAGGCCGTGAGTCGTTTTGACGTA
GCCGTCGGCTCGGAGCCTGACGTCCCGCTCGCCCAAATAGTCCAGTCCAT
CCGACACATCACCCGCCTATCGGATGGTTTCGGAGACGGTACAATCGATG
CAAACCTTAACCTCGACCTGGGGGCTAACACCTTCTTCCTCTCCCTCACC
TTTCCCGACATGCGGGAATGCCTCCCCCTCCTCCCGGGCCTTGAACGGGG
GGTGGACGCGTTGGAGCTTCGCGTGGACCTCCTACAAGACCGTACCCCCT
GGAGCATCCTTCGCCAGGTTGCCATTTTGAAGTCTGCTACACAGCTCCCA
ATCATCTACACCGTACGCTCCAAAGACCAATGCGGCGCCTTCCCTAACGA
CGCCGAAGCCATTTTCAAGCTCCTCGGCCTGGGTTTACGAGCAGGTGTTG
AAGTCTTGGATGTGGAGGCGTGCTGGGACCGGAAGATACGAAGTCACTTG
CTGGATGCAGCGTGGCGTAGCTATAGGGGTACTACCCGTCTTTTGGGTTC
GTATCACGTTGTGGGTCGTTCGACAACTGATCAGGAGGCACTACGGATTT
TTCAAGAGTGCTTCCATGATGGGAGGGTGGATGCTGTTAAGGTTGTTTTG
ACTGCGAATTCGATGCGCGATGCGTATCATGTGCATGAACTAGCGGCTGC
GGCGGGGCTGCCAGCGTCGGTGCCTGTGGTGGCGTTGTGCTTGGGGGAGG
TGGGGAAATTGAGTCGGGTTTTGAACAGTAGATATACACCCGTTACAAAC
AAGCTTCTGCCTTATGTCGCCGCTCCCGGTCAGTTGACTGCGGGAGAGAT
CATGAATTTTAGGAGGGATCTTGGCATGGTCCCCTCGGCATCGTTCTGTT
TGTTGGGGCATCCTATTTCGAAGTCGCCGTCGCCTGCCATGCATAACGCG
GCCTTTCAACACTGTCTGTTACCCCACACCTATTCCCTCTTCGAGACGGA
AGACGTCCTTGATCTCAAAGCCAAATACTCAGATCAAAATGCGCAGTCCT
TCGGGGGTTGTTCTGTCACTATCCCTCATAAGCAAGCTGTGATTCCCTTG
CTTCATCGTGTATCGCCCTCCGTGGACGCCATCGGTGCAGTCAACACAGT
GGTTGTCGAGCGAGAGGCAGGCACGGGGCAACTCCGCTGGGTGGGGCACA
ATACAGATTGGAAGGGGATCGTGAAGCCCATTGTTCAACGTCTTCGAGAG
ACGGGTCGAGGGGTAACGGACGCGGAGGGGCGGCCTCGAGTGGCCCTTGT
CGTGGGGGGAGGAGGGACGGCGCTTGCGGCAGCGTATGGCATGACCTCCC
TGGGGCTACGCCTGCTTGTCTTCAATCGCACCCCGAGCAAGGCTCAGGAT
GTCGCCGCGCGCTTTGGAGGGACGGTAGTGCATGCCCTGACGCCTGAATC
TATCCTGGAAGCGACGGGTGGCCAGCAAGGAGGTATAGATGTAGTTGTCT
CCACCATTCCTTCTACCGCCGGCTTCCTCCTACCCCCCTCTCTGCTGCGA
GCACAACCAGTGGTTATGGACGTGGCATACCGCCCAGCGGAAACGGCGCT
ACTGGCACAGGCTCGCGAGGCGGGATGCCCATTCGTCCAGGGAGCCGAAA
TGTTGATTGCGCAGGGGGTGGAGCAGTTCCAGTTGTGGACTAAGAGGCGG
GCACCTGAGGCAGTGATGCGGGCAGCGGTCTATGCCACGGTGGAGGAGTT
GAAGTAGGACGGTGAGGGGGAAACGGAGCAATGAATTGTATTTAAAAGTA
GTAAATGGTCATGAGATGAATCACAACGACGGG

Coding sequence (CDS) from alignment at scaffold_21:115597..117979+

>mRNA_7700 ID=mRNA_7700|Name=jgi.p|Nanoce1779_2|599717|organism=Nannochloropsis oceanica|type=CDS|length=2277bp|location=Sequence derived from alignment at scaffold_21:115597..117979+ (Nannochloropsis oceanica)
ATGTCCTCTCCTCGGTGGCGGTACGTCGCAGCAGCAGCCCTCTTCTTCTT
GTCCGGCCTGACCGCCACAGTCGACTCCTTTCCAGTACTGAGGTGCCCGC
CATCCCCCCCCTCCTCTTCATCCAGCTCCTCGGCATCTGCCGCAAGAACG
TCAGCGTCCTTAGCATTAAATCAACACTCCTGTAAGCTCCCTTCTTCCTC
CACCTCAACTCGCCCAGCCTCCGGTCTCAGCATGCTGGCGAGTAGCATCG
CTAGCACGATATGTCGCACGGTTAGTGGCGGCAACATGGCCATTTACCTC
GTGGGTGCGACCAATCAGCGGATAGCGGTCGCGGAGGCCGTGAGCAAGGC
GGTGGGCTGGCCAGTGGTCAAGGCTACGAGTACTGCCGCCCTCCTTTCTT
CGCCCTCCATTCCTGCTATCGTTGACGTGGACGACTCTACGATAGCTGAT
GCGAAGGGCGCTGAGTTCCTGGAGGCGCAGCCACTCGTCATCCAGCTGGT
GGAGATGGAAGATTTCGCTGACAACGACGAGAAGCATAAGAGCCGGCAGG
CCGTGAGTCGTTTTGACGTAGCCGTCGGCTCGGAGCCTGACGTCCCGCTC
GCCCAAATAGTCCAGTCCATCCGACACATCACCCGCCTATCGGATGGTTT
CGGAGACGGTACAATCGATGCAAACCTTAACCTCGACCTGGGGGCTAACA
CCTTCTTCCTCTCCCTCACCTTTCCCGACATGCGGGAATGCCTCCCCCTC
CTCCCGGGCCTTGAACGGGGGGTGGACGCGTTGGAGCTTCGCGTGGACCT
CCTACAAGACCGTACCCCCTGGAGCATCCTTCGCCAGGTTGCCATTTTGA
AGTCTGCTACACAGCTCCCAATCATCTACACCGTACGCTCCAAAGACCAA
TGCGGCGCCTTCCCTAACGACGCCGAAGCCATTTTCAAGCTCCTCGGCCT
GGGTTTACGAGCAGGTGTTGAAGTCTTGGATGTGGAGGCGTGCTGGGACC
GGAAGATACGAAGTCACTTGCTGGATGCAGCGTGGCGTAGCTATAGGGGT
ACTACCCGTCTTTTGGGTTCGTATCACGTTGTGGGTCGTTCGACAACTGA
TCAGGAGGCACTACGGATTTTTCAAGAGTGCTTCCATGATGGGAGGGTGG
ATGCTGTTAAGGTTGTTTTGACTGCGAATTCGATGCGCGATGCGTATCAT
GTGCATGAACTAGCGGCTGCGGCGGGGCTGCCAGCGTCGGTGCCTGTGGT
GGCGTTGTGCTTGGGGGAGGTGGGGAAATTGAGTCGGGTTTTGAACAGTA
GATATACACCCGTTACAAACAAGCTTCTGCCTTATGTCGCCGCTCCCGGT
CAGTTGACTGCGGGAGAGATCATGAATTTTAGGAGGGATCTTGGCATGGT
CCCCTCGGCATCGTTCTGTTTGTTGGGGCATCCTATTTCGAAGTCGCCGT
CGCCTGCCATGCATAACGCGGCCTTTCAACACTGTCTGTTACCCCACACC
TATTCCCTCTTCGAGACGGAAGACGTCCTTGATCTCAAAGCCAAATACTC
AGATCAAAATGCGCAGTCCTTCGGGGGTTGTTCTGTCACTATCCCTCATA
AGCAAGCTGTGATTCCCTTGCTTCATCGTGTATCGCCCTCCGTGGACGCC
ATCGGTGCAGTCAACACAGTGGTTGTCGAGCGAGAGGCAGGCACGGGGCA
ACTCCGCTGGGTGGGGCACAATACAGATTGGAAGGGGATCGTGAAGCCCA
TTGTTCAACGTCTTCGAGAGACGGGTCGAGGGGTAACGGACGCGGAGGGG
CGGCCTCGAGTGGCCCTTGTCGTGGGGGGAGGAGGGACGGCGCTTGCGGC
AGCGTATGGCATGACCTCCCTGGGGCTACGCCTGCTTGTCTTCAATCGCA
CCCCGAGCAAGGCTCAGGATGTCGCCGCGCGCTTTGGAGGGACGGTAGTG
CATGCCCTGACGCCTGAATCTATCCTGGAAGCGACGGGTGGCCAGCAAGG
AGGTATAGATGTAGTTGTCTCCACCATTCCTTCTACCGCCGGCTTCCTCC
TACCCCCCTCTCTGCTGCGAGCACAACCAGTGGTTATGGACGTGGCATAC
CGCCCAGCGGAAACGGCGCTACTGGCACAGGCTCGCGAGGCGGGATGCCC
ATTCGTCCAGGGAGCCGAAATGTTGATTGCGCAGGGGGTGGAGCAGTTCC
AGTTGTGGACTAAGAGGCGGGCACCTGAGGCAGTGATGCGGGCAGCGGTC
TATGCCACGGTGGAGGAGTTGAAGTAG

Synonyms

Publications