jgi.p|Nanoce1779_2|574075, mRNA_770 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574075
Unique Name	mRNA_770
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2488
Alignment location	scaffold_2:393606..396093 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574161
Track	FilteredModels2
ProteinId	574075

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:393606..396093 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574075	gene_770	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574075	mRNA_770-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_770	CDS_770	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:393606..396093-
coding sequence from alignment at scaffold_2:393606..396093-

mRNA sequence

>mRNA_770 ID=mRNA_770|Name=jgi.p|Nanoce1779_2|574075|organism=Nannochloropsis oceanica|type=mRNA|length=2488bp
CAGCGGGACAACAAACGATGCCACTTTGCAGAATAGGTGCTGCCTTGCAG
AATAGGCGAAGACGCGGTGGATAGCTCATGACGAGAGCGACGACCTGATC
ACTCCAGAGCCCCCTCTCCATAACCCTAGAACCATGCGACGTCCTTACCA
TCGCGTTGGCCGCGGAACCCTTGACGGACTGGAAAGCGGTGGCCGTATCG
ACCCAATTGATTTACCATTCTCATGGTGGCGGTTGCGCGGCTGCTCTTCC
CGGAGTTTCTACATGTTGTCGGCCGTGCTGATAGTCGGTTGCCTAGTCCT
GCACCTTACCCACCTTGCCCTCCAAACAGCCTTTCAAGTTGAGCTCCTCC
CCGCAACTTCACGCACCGGCGGAGTCTACGGCAGCACGTACACCATTCGT
GTCAATTCATTCAGGCGGAACGACATGCTTAAGGGCTTTTTGCAGCATTT
CGCCACATGCCCCAACGTCGAGGCCATTCATGTGGTTTGGTCCGACCAAG
AAAACAAACCCCCTTCCATGGCTGATTGGGCCCTTCCCCTAACCTCCGAC
CAATTAGAAAAAGTCCAGTTCGAAGAACAGCCGACTGACAGCCTGAATAA
TCGCTTTCGTGTCTTGCTGCCGGTGCCCACCCCTGCCGTGTTGTCCTTGG
ACGATGACCTGGTAATTCCTTGTGGCACACTTGACTTCGCATTTTCTGTC
TGGCAAGCCGCCCCTCACTCCCTCGTGGGCTTCACTCCCCGACTTATCAC
CTGGGATGCTGGCACCAGTGCCACTGCTGCGGAAGGAGAGACGGAGGGGA
ATGAGGGAGGGAGTGGATCACTGGGGGGGAGCTACAGATATCAAAGCTCG
TTTAAGTACGTCTGGTGGCATGGCCGGTACAACCTGATCCTGACGAAATG
CTGCTTTCTCCACCGGGAATTCCTTTCACTATATTTCTCCTCTCTGTCCT
CGGCGACCTTGGATTATATCGACCAAAAACGAAATTGTGAAGACATAGCG
ATGCAGTTTGTTGTTTCCAACCACACGGGTTGCGCGCCCCCTGTATGGGT
TCAGGCGAAAGTCACGGACCATGGCCAAACGTCGGGGATAAGTCAGGGGC
AGGATCATGCGAATGAGAGAAGTGCGTGTGTTGGGAGGTTGGTAAAGGAG
TTTGGGCACTTGCCGTTGACGACCACGGCGCATAAGGCGGTGGATGCGAG
GGGGAAGTGGCTGTGGTAGTGGTGGTGTGGGGAAGGAACCCGCGACCGAT
GGCGGCTTTTTGCGGCCGGGGCATGGAAATCGATGTGCACCTCTTATATC
TAAATATTTATGCTTCGCCTTCGTCAGCAAATTATTGACGTGCACAAATT
GAAGCCTGAAGCGAGTGAAATGAGGCGAGGCGGGCAGCACCAGTATATGT
ATAATGTATGAGAGGATCGAATGATCAACACAGATGAGAGCAGTTGCACG
AAAGCAGACACATAAATCAAAAGCACACACAGTTGAGACCTGGAAAGCGA
TCTCAGAAGACAAACACGTACCAAACCCCTAGTATTACTTTCTCTGAAAA
AGACTAATTTTTCTACATCATCCCCATCCCTCCAACCCCCAGATAGGAAA
GCAAGGACTAGACGACAAGACCTACTCGCCAACAAGCGAGCCGACATCTA
ACAACACTGCTTCGCCTCTATACTCCACGACCTTCTCAACACCGCCAAAT
ATCTTATGCCACAAGACCGCTTAACTGCCGGTCTGGCCGGCGCATTAGTG
GTGGCCGGGACCTGGCTTCTCACCGAGAAAGGAGTTCCCCAACTTCTCTT
TCATCACGTGACAAACTTGCTCCGGGGGAAGAAGAAAAGGCATCGAAACG
TTAGGGATGGATATAGAGGCGCCACTGAGGATTTGTCTTTGTTCTATGGC
ATGGACCAAGCGGCAATGACGACTGTGACACCTGAAGCAAGGCTACTTCC
ACAGGAGCTCTATGAACAGGTAGTGCGACTGTTACCTATTTTGTGTGTAG
ATTTGGCCATAGAGCGACCGTCGGACGGCAAGTTTTTGCTGGTCAAACGC
GGCTCAGAGCCAGCAAAAGGATTTTATTGGCCGCCGGGGGGAAGGATTTT
TAGAGGGGAGACTTTTTTTGCAGCGGCAGTGAGGAAGGCAAGGGAGGAGA
CGGGAGTGGAGGCTTTCCCCCTCGGTGTGCTTGGTGTGTACAACACATTT
TTTCCGACGTCAAACTGGGGCTCAGGTATGGGGACACACACAGTCAATAT
ATGTGTGCATATGCGGTTGGTGGGAGGGGGGAAGGAAGGGGAGGGGGAGG
TGCAGTTGGATGAAACGAGCGAGGAGCATGTGTGGGTGCACCCGAGGGAG
AAGTGTCATCACGATCCATATGTCCAGGAGATTTTGATGGCGGTGGCAAG
CGGAGTGTGTTTGTAGCAGGTGTGGAAATCATCCAACAACTGTTACAAAC
GGAAAGAACGAAAAGGAAAGCAAGCGGTCACATGTAAC

protein sequence of jgi.p|Nanoce1779_2|574075

>mRNA_770-protein ID=mRNA_770-protein|Name=jgi.p|Nanoce1779_2|574075|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MRRPYHRVGRGTLDGLESGGRIDPIDLPFSWWRLRGCSSRSFYMLSAVLI
VGCLVLHLTHLALQTAFQVELLPATSRTGGVYGSTYTIRVNSFRRNDMLK
GFLQHFATCPNVEAIHVVWSDQENKPPSMADWALPLTSDQLEKVQFEEQP
TDSLNNRFRVLLPVPTPAVLSLDDDLVIPCGTLDFAFSVWQAAPHSLVGF
TPRLITWDAGTSATAAEGETEGNEGGSGSLGGSYRYQSSFKYVWWHGRYN
LILTKCCFLHREFLSLYFSSLSSATLDYIDQKRNCEDIAMQFVVSNHTGC
APPVWVQAKVTDHGQTSGISQGQDHANERSACVGRLVKEFGHLPLTTTAH
KAVDARGKWLW*

mRNA from alignment at scaffold_2:393606..396093-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_770 ID=mRNA_770|Name=jgi.p|Nanoce1779_2|574075|organism=Nannochloropsis oceanica|type=mRNA|length=2488bp|location=Sequence derived from alignment at scaffold_2:393606..396093- (Nannochloropsis oceanica)
CAGCGGGACAACAAACGATGCCACTTTGCAGAATAGGTGCTGCCTTGCAG
AATAGGCGAAGACGCGGTGGATAGCTCATGACGAGAGCGACGACCTGATC
ACTCCAGAGCCCCCTCTCCATAACCCTAGAACCATGCGACGTCCTTACCA
TCGCGTTGGCCGCGGAACCCTTGACGGACTGGAAAGCGGTGGCCGTATCG
ACCCAATTGATTTACCATTCTCATGGTGGCGGTTGCGCGGCTGCTCTTCC
CGGAGTTTCTACATGTTGTCGGCCGTGCTGATAGTCGGTTGCCTAGTCCT
GCACCTTACCCACCTTGCCCTCCAAACAGCCTTTCAAGTTGAGCTCCTCC
CCGCAACTTCACGCACCGGCGGAGTCTACGGCAGCACGTACACCATTCGT
GTCAATTCATTCAGGCGGAACGACATGCTTAAGGGCTTTTTGCAGCATTT
CGCCACATGCCCCAACGTCGAGGCCATTCATGTGGTTTGGTCCGACCAAG
AAAACAAACCCCCTTCCATGGCTGATTGGGCCCTTCCCCTAACCTCCGAC
CAATTAGAAAAAGTCCAGTTCGAAGAACAGCCGACTGACAGCCTGAATAA
TCGCTTTCGTGTCTTGCTGCCGGTGCCCACCCCTGCCGTGTTGTCCTTGG
ACGATGACCTGGTAATTCCTTGTGGCACACTTGACTTCGCATTTTCTGTC
TGGCAAGCCGCCCCTCACTCCCTCGTGGGCTTCACTCCCCGACTTATCAC
CTGGGATGCTGGCACCAGTGCCACTGCTGCGGAAGGAGAGACGGAGGGGA
ATGAGGGAGGGAGTGGATCACTGGGGGGGAGCTACAGATATCAAAGCTCG
TTTAAGTACGTCTGGTGGCATGGCCGGTACAACCTGATCCTGACGAAATG
CTGCTTTCTCCACCGGGAATTCCTTTCACTATATTTCTCCTCTCTGTCCT
CGGCGACCTTGGATTATATCGACCAAAAACGAAATTGTGAAGACATAGCG
ATGCAGTTTGTTGTTTCCAACCACACGGGTTGCGCGCCCCCTGTATGGGT
TCAGGCGAAAGTCACGGACCATGGCCAAACGTCGGGGATAAGTCAGGGGC
AGGATCATGCGAATGAGAGAAGTGCGTGTGTTGGGAGGTTGGTAAAGGAG
TTTGGGCACTTGCCGTTGACGACCACGGCGCATAAGGCGGTGGATGCGAG
GGGGAAGTGGCTGTGGTAGTGGTGGTGTGGGGAAGGAACCCGCGACCGAT
GGCGGCTTTTTGCGGCCGGGGCATGGAAATCGATGTGCACCTCTTATATC
TAAATATTTATGCTTCGCCTTCGTCAGCAAATTATTGACGTGCACAAATT
GAAGCCTGAAGCGAGTGAAATGAGGCGAGGCGGGCAGCACCAGTATATGT
ATAATGTATGAGAGGATCGAATGATCAACACAGATGAGAGCAGTTGCACG
AAAGCAGACACATAAATCAAAAGCACACACAGTTGAGACCTGGAAAGCGA
TCTCAGAAGACAAACACGTACCAAACCCCTAGTATTACTTTCTCTGAAAA
AGACTAATTTTTCTACATCATCCCCATCCCTCCAACCCCCAGATAGGAAA
GCAAGGACTAGACGACAAGACCTACTCGCCAACAAGCGAGCCGACATCTA
ACAACACTGCTTCGCCTCTATACTCCACGACCTTCTCAACACCGCCAAAT
ATCTTATGCCACAAGACCGCTTAACTGCCGGTCTGGCCGGCGCATTAGTG
GTGGCCGGGACCTGGCTTCTCACCGAGAAAGGAGTTCCCCAACTTCTCTT
TCATCACGTGACAAACTTGCTCCGGGGGAAGAAGAAAAGGCATCGAAACG
TTAGGGATGGATATAGAGGCGCCACTGAGGATTTGTCTTTGTTCTATGGC
ATGGACCAAGCGGCAATGACGACTGTGACACCTGAAGCAAGGCTACTTCC
ACAGGAGCTCTATGAACAGGTAGTGCGACTGTTACCTATTTTGTGTGTAG
ATTTGGCCATAGAGCGACCGTCGGACGGCAAGTTTTTGCTGGTCAAACGC
GGCTCAGAGCCAGCAAAAGGATTTTATTGGCCGCCGGGGGGAAGGATTTT
TAGAGGGGAGACTTTTTTTGCAGCGGCAGTGAGGAAGGCAAGGGAGGAGA
CGGGAGTGGAGGCTTTCCCCCTCGGTGTGCTTGGTGTGTACAACACATTT
TTTCCGACGTCAAACTGGGGCTCAGGTATGGGGACACACACAGTCAATAT
ATGTGTGCATATGCGGTTGGTGGGAGGGGGGAAGGAAGGGGAGGGGGAGG
TGCAGTTGGATGAAACGAGCGAGGAGCATGTGTGGGTGCACCCGAGGGAG
AAGTGTCATCACGATCCATATGTCCAGGAGATTTTGATGGCGGTGGCAAG
CGGAGTGTGTTTGTAGCAGGTGTGGAAATCATCCAACAACTGTTACAAAC
GGAAAGAACGAAAAGGAAAGCAAGCGGTCACATGTAAC

Coding sequence (CDS) from alignment at scaffold_2:393606..396093-

>mRNA_770 ID=mRNA_770|Name=jgi.p|Nanoce1779_2|574075|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at scaffold_2:393606..396093- (Nannochloropsis oceanica)
ATGCGACGTCCTTACCATCGCGTTGGCCGCGGAACCCTTGACGGACTGGA
AAGCGGTGGCCGTATCGACCCAATTGATTTACCATTCTCATGGTGGCGGT
TGCGCGGCTGCTCTTCCCGGAGTTTCTACATGTTGTCGGCCGTGCTGATA
GTCGGTTGCCTAGTCCTGCACCTTACCCACCTTGCCCTCCAAACAGCCTT
TCAAGTTGAGCTCCTCCCCGCAACTTCACGCACCGGCGGAGTCTACGGCA
GCACGTACACCATTCGTGTCAATTCATTCAGGCGGAACGACATGCTTAAG
GGCTTTTTGCAGCATTTCGCCACATGCCCCAACGTCGAGGCCATTCATGT
GGTTTGGTCCGACCAAGAAAACAAACCCCCTTCCATGGCTGATTGGGCCC
TTCCCCTAACCTCCGACCAATTAGAAAAAGTCCAGTTCGAAGAACAGCCG
ACTGACAGCCTGAATAATCGCTTTCGTGTCTTGCTGCCGGTGCCCACCCC
TGCCGTGTTGTCCTTGGACGATGACCTGGTAATTCCTTGTGGCACACTTG
ACTTCGCATTTTCTGTCTGGCAAGCCGCCCCTCACTCCCTCGTGGGCTTC
ACTCCCCGACTTATCACCTGGGATGCTGGCACCAGTGCCACTGCTGCGGA
AGGAGAGACGGAGGGGAATGAGGGAGGGAGTGGATCACTGGGGGGGAGCT
ACAGATATCAAAGCTCGTTTAAGTACGTCTGGTGGCATGGCCGGTACAAC
CTGATCCTGACGAAATGCTGCTTTCTCCACCGGGAATTCCTTTCACTATA
TTTCTCCTCTCTGTCCTCGGCGACCTTGGATTATATCGACCAAAAACGAA
ATTGTGAAGACATAGCGATGCAGTTTGTTGTTTCCAACCACACGGGTTGC
GCGCCCCCTGTATGGGTTCAGGCGAAAGTCACGGACCATGGCCAAACGTC
GGGGATAAGTCAGGGGCAGGATCATGCGAATGAGAGAAGTGCGTGTGTTG
GGAGGTTGGTAAAGGAGTTTGGGCACTTGCCGTTGACGACCACGGCGCAT
AAGGCGGTGGATGCGAGGGGGAAGTGGCTGTGGTAG

Synonyms

Publications