jgi.p|Nanoce1779_2|627608, mRNA_77 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627608
Unique Name	mRNA_77
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2013
Alignment location	scaffold_3:206792..208804 +

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Properties


Property Name	Value
TranscriptId	627694
Track	FilteredModels2
ProteinId	627608

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:206792..208804 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627608	gene_77	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627608	mRNA_77-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_77	CDS_77	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:206792..208804+
coding sequence from alignment at scaffold_3:206792..208804+

mRNA sequence

>mRNA_77 ID=mRNA_77|Name=jgi.p|Nanoce1779_2|627608|organism=Nannochloropsis oceanica|type=mRNA|length=2013bp
ATGGCAACTCCAAAAGATCATGAAGATCGTAGCTGCCTCCTCCCCCTGAC
CATCTTGCACCAATCCCGCGCATTGGCCACTTGTCTACACGCCAATGACC
TGTCTCACCTCTCCCTCAGTAACCGTGCCTGCCGAACCTTCTGGCCGCAA
GTCCAGTCCTTGCACGTCCCGTTCTTCCAGTACTCTCTCCTTTCAAGGCA
CGCCGTCAACAAGGCAAGGACGGACGGTTTCCGTCGCGCCTGCCAAGAAG
GCCAGCTCAAGCACCTAGTAAACCTGTCCCTGAACGGAGCTTACTTGGAG
GATAAGGACTTTGAACGTCTCGCCTGTGACATTTTGCCCTACCTGCCTCA
GCTTGAGACCCTGGACGTAGGAAACAATCCCTCCCTCCTGTCCCTTGGAC
TCAACTACCTCGCCTGCAGCCCCAACGCCTTGCCGTCTAATCTCCGCGAC
CTCAGGCTGGCGCATAATCCCAACATATGTCGGGGAGCGTACGGTGGTGC
ACACCTAGGGCGGCTCTTAATTCAGCTGTGGCCACGCTTGGAGTGCTTGG
ACTTGACGCAGACCGGAGTGACGGAGGACACCCTCAGGATTGCGGTCGAC
CTTTTAAAATGTTTAACGGAGCTTAGAGAAGGTGGGGGCGGTAGAGAAAG
AAAAGAAAGCTGGAGAGGAAACGAAGACGAAGCAAAAGGGCCGCGGCTTC
CCCAGCTTGGAGTTGCCGGTCTACGCGAGCTCCGGCTAGGCCAAAATATA
TTGCAGGGACGAGGGAGCGCCCAGGTATTGTCAGCGGCTTTAGAATGCCC
TGGCAGGCCTGGAACGAAGCAGCCCCTGGAACGTCTGATCTTAGACGACT
GCTATATGGGCGATGAGGGCTTGGCGTTCTTCGCGGAAGCTTCGCTGTGT
TCGGGTCAATTTTGCTCGCTTCGTGAATTGCACTTGCAGAACAATCGGTG
CGGTGAGGGGGGCGCGCGGGCGCTGGGGAAGGCGTGTGTAGAGGGCTTAC
CAGCTCTGGAGTTTTTGGGGCTGCAGATGAATATGATGGGGAACGTGGGA
GCCTTAGCCCTTGTGGAGGGGATGGTGGGCGAGGAGGAGGATGACGGGGG
GGAGGGAGGGGAGGGGAGGGATATGGCGAGGTGGGAGAAAATGAAGGAAG
CGGTGGTAAAAAAGGAAGGGGATAAAAGAAGTCTGCCAAGATTAAAACGA
CTGGATTTGTCGCATAATATGATTGATGCATTGGGGGTCGAGAGATTTTC
GAAGTTACTGTTGGGATCGGGCCGTTGCCCTTCTCTCGAGGAGCTCGATC
TTACGCACAATGCTGTGCGGGAGAAGGAGGCTTGGGAGTTGCAGCGTGCC
ATCCACTTCTGCAGCAGCAGAAGCAGCACCACTATCTCCGCCTTGACAAA
AGCCGGTAGCACGACTACGATTACCACCGTCACGACCTTTTTTTTACAGG
GAGAAAATAAAGAGACTGAAGTCAAAGTGCGGTTGAGCCCAGGGTTGTAC
TGCCAGGTGCTGCTCGAGGGGGAGGAGGAGGAGGAGGAGGTGGGAAGGAG
GGGGAGAGGGGACACGGGGAAATCGGATGCATTAGTCTACAGGCTGATGT
TGTCCGTCTCCGATCTCGTCGATTTTGCCTTTGATTTGTGTGTGGGAGAA
GACGAAGAGTAGGAGGTTGGGGAGGGAGGAAGGGAGGGAGGGCGATTATC
GTAATAGACGCGAATGAGGCGAGTTTAAAAATGAGCACCCGATCATGACA
CCCTCCATATACATGCTGGTATAAGATAGATATCTAGACACGAAGGGAAG
AGTTGAATATGAAAGAAGGCTCAAAGCCTGGACGAGGGACGGAAAGGGGA
GGATCAACAGTCAGTAATATAGAAAGCTTACGAATAATTGCGTGTATAGA
CAGACACAACGGACGAGCATATATTTAAATAAACCCCAATGAGTGGAGGA
GGATATGATTGGAGGAAGAATAAAGAGAACAAAAGAAGAAGAAGAAGAAG
AAAATGAAGAAGC

protein sequence of jgi.p|Nanoce1779_2|627608

>mRNA_77-protein ID=mRNA_77-protein|Name=jgi.p|Nanoce1779_2|627608|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp
MATPKDHEDRSCLLPLTILHQSRALATCLHANDLSHLSLSNRACRTFWPQ
VQSLHVPFFQYSLLSRHAVNKARTDGFRRACQEGQLKHLVNLSLNGAYLE
DKDFERLACDILPYLPQLETLDVGNNPSLLSLGLNYLACSPNALPSNLRD
LRLAHNPNICRGAYGGAHLGRLLIQLWPRLECLDLTQTGVTEDTLRIAVD
LLKCLTELREGGGGRERKESWRGNEDEAKGPRLPQLGVAGLRELRLGQNI
LQGRGSAQVLSAALECPGRPGTKQPLERLILDDCYMGDEGLAFFAEASLC
SGQFCSLRELHLQNNRCGEGGARALGKACVEGLPALEFLGLQMNMMGNVG
ALALVEGMVGEEEDDGGEGGEGRDMARWEKMKEAVVKKEGDKRSLPRLKR
LDLSHNMIDALGVERFSKLLLGSGRCPSLEELDLTHNAVREKEAWELQRA
IHFCSSRSSTTISALTKAGSTTTITTVTTFFLQGENKETEVKVRLSPGLY
CQVLLEGEEEEEEVGRRGRGDTGKSDALVYRLMLSVSDLVDFAFDLCVGE
DEE*

mRNA from alignment at scaffold_3:206792..208804+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_77 ID=mRNA_77|Name=jgi.p|Nanoce1779_2|627608|organism=Nannochloropsis oceanica|type=mRNA|length=2013bp|location=Sequence derived from alignment at scaffold_3:206792..208804+ (Nannochloropsis oceanica)
ATGGCAACTCCAAAAGATCATGAAGATCGTAGCTGCCTCCTCCCCCTGAC
CATCTTGCACCAATCCCGCGCATTGGCCACTTGTCTACACGCCAATGACC
TGTCTCACCTCTCCCTCAGTAACCGTGCCTGCCGAACCTTCTGGCCGCAA
GTCCAGTCCTTGCACGTCCCGTTCTTCCAGTACTCTCTCCTTTCAAGGCA
CGCCGTCAACAAGGCAAGGACGGACGGTTTCCGTCGCGCCTGCCAAGAAG
GCCAGCTCAAGCACCTAGTAAACCTGTCCCTGAACGGAGCTTACTTGGAG
GATAAGGACTTTGAACGTCTCGCCTGTGACATTTTGCCCTACCTGCCTCA
GCTTGAGACCCTGGACGTAGGAAACAATCCCTCCCTCCTGTCCCTTGGAC
TCAACTACCTCGCCTGCAGCCCCAACGCCTTGCCGTCTAATCTCCGCGAC
CTCAGGCTGGCGCATAATCCCAACATATGTCGGGGAGCGTACGGTGGTGC
ACACCTAGGGCGGCTCTTAATTCAGCTGTGGCCACGCTTGGAGTGCTTGG
ACTTGACGCAGACCGGAGTGACGGAGGACACCCTCAGGATTGCGGTCGAC
CTTTTAAAATGTTTAACGGAGCTTAGAGAAGGTGGGGGCGGTAGAGAAAG
AAAAGAAAGCTGGAGAGGAAACGAAGACGAAGCAAAAGGGCCGCGGCTTC
CCCAGCTTGGAGTTGCCGGTCTACGCGAGCTCCGGCTAGGCCAAAATATA
TTGCAGGGACGAGGGAGCGCCCAGGTATTGTCAGCGGCTTTAGAATGCCC
TGGCAGGCCTGGAACGAAGCAGCCCCTGGAACGTCTGATCTTAGACGACT
GCTATATGGGCGATGAGGGCTTGGCGTTCTTCGCGGAAGCTTCGCTGTGT
TCGGGTCAATTTTGCTCGCTTCGTGAATTGCACTTGCAGAACAATCGGTG
CGGTGAGGGGGGCGCGCGGGCGCTGGGGAAGGCGTGTGTAGAGGGCTTAC
CAGCTCTGGAGTTTTTGGGGCTGCAGATGAATATGATGGGGAACGTGGGA
GCCTTAGCCCTTGTGGAGGGGATGGTGGGCGAGGAGGAGGATGACGGGGG
GGAGGGAGGGGAGGGGAGGGATATGGCGAGGTGGGAGAAAATGAAGGAAG
CGGTGGTAAAAAAGGAAGGGGATAAAAGAAGTCTGCCAAGATTAAAACGA
CTGGATTTGTCGCATAATATGATTGATGCATTGGGGGTCGAGAGATTTTC
GAAGTTACTGTTGGGATCGGGCCGTTGCCCTTCTCTCGAGGAGCTCGATC
TTACGCACAATGCTGTGCGGGAGAAGGAGGCTTGGGAGTTGCAGCGTGCC
ATCCACTTCTGCAGCAGCAGAAGCAGCACCACTATCTCCGCCTTGACAAA
AGCCGGTAGCACGACTACGATTACCACCGTCACGACCTTTTTTTTACAGG
GAGAAAATAAAGAGACTGAAGTCAAAGTGCGGTTGAGCCCAGGGTTGTAC
TGCCAGGTGCTGCTCGAGGGGGAGGAGGAGGAGGAGGAGGTGGGAAGGAG
GGGGAGAGGGGACACGGGGAAATCGGATGCATTAGTCTACAGGCTGATGT
TGTCCGTCTCCGATCTCGTCGATTTTGCCTTTGATTTGTGTGTGGGAGAA
GACGAAGAGTAGGAGGTTGGGGAGGGAGGAAGGGAGGGAGGGCGATTATC
GTAATAGACGCGAATGAGGCGAGTTTAAAAATGAGCACCCGATCATGACA
CCCTCCATATACATGCTGGTATAAGATAGATATCTAGACACGAAGGGAAG
AGTTGAATATGAAAGAAGGCTCAAAGCCTGGACGAGGGACGGAAAGGGGA
GGATCAACAGTCAGTAATATAGAAAGCTTACGAATAATTGCGTGTATAGA
CAGACACAACGGACGAGCATATATTTAAATAAACCCCAATGAGTGGAGGA
GGATATGATTGGAGGAAGAATAAAGAGAACAAAAGAAGAAGAAGAAGAAG
AAAATGAAGAAGC

Coding sequence (CDS) from alignment at scaffold_3:206792..208804+

>mRNA_77 ID=mRNA_77|Name=jgi.p|Nanoce1779_2|627608|organism=Nannochloropsis oceanica|type=CDS|length=1662bp|location=Sequence derived from alignment at scaffold_3:206792..208804+ (Nannochloropsis oceanica)
ATGGCAACTCCAAAAGATCATGAAGATCGTAGCTGCCTCCTCCCCCTGAC
CATCTTGCACCAATCCCGCGCATTGGCCACTTGTCTACACGCCAATGACC
TGTCTCACCTCTCCCTCAGTAACCGTGCCTGCCGAACCTTCTGGCCGCAA
GTCCAGTCCTTGCACGTCCCGTTCTTCCAGTACTCTCTCCTTTCAAGGCA
CGCCGTCAACAAGGCAAGGACGGACGGTTTCCGTCGCGCCTGCCAAGAAG
GCCAGCTCAAGCACCTAGTAAACCTGTCCCTGAACGGAGCTTACTTGGAG
GATAAGGACTTTGAACGTCTCGCCTGTGACATTTTGCCCTACCTGCCTCA
GCTTGAGACCCTGGACGTAGGAAACAATCCCTCCCTCCTGTCCCTTGGAC
TCAACTACCTCGCCTGCAGCCCCAACGCCTTGCCGTCTAATCTCCGCGAC
CTCAGGCTGGCGCATAATCCCAACATATGTCGGGGAGCGTACGGTGGTGC
ACACCTAGGGCGGCTCTTAATTCAGCTGTGGCCACGCTTGGAGTGCTTGG
ACTTGACGCAGACCGGAGTGACGGAGGACACCCTCAGGATTGCGGTCGAC
CTTTTAAAATGTTTAACGGAGCTTAGAGAAGGTGGGGGCGGTAGAGAAAG
AAAAGAAAGCTGGAGAGGAAACGAAGACGAAGCAAAAGGGCCGCGGCTTC
CCCAGCTTGGAGTTGCCGGTCTACGCGAGCTCCGGCTAGGCCAAAATATA
TTGCAGGGACGAGGGAGCGCCCAGGTATTGTCAGCGGCTTTAGAATGCCC
TGGCAGGCCTGGAACGAAGCAGCCCCTGGAACGTCTGATCTTAGACGACT
GCTATATGGGCGATGAGGGCTTGGCGTTCTTCGCGGAAGCTTCGCTGTGT
TCGGGTCAATTTTGCTCGCTTCGTGAATTGCACTTGCAGAACAATCGGTG
CGGTGAGGGGGGCGCGCGGGCGCTGGGGAAGGCGTGTGTAGAGGGCTTAC
CAGCTCTGGAGTTTTTGGGGCTGCAGATGAATATGATGGGGAACGTGGGA
GCCTTAGCCCTTGTGGAGGGGATGGTGGGCGAGGAGGAGGATGACGGGGG
GGAGGGAGGGGAGGGGAGGGATATGGCGAGGTGGGAGAAAATGAAGGAAG
CGGTGGTAAAAAAGGAAGGGGATAAAAGAAGTCTGCCAAGATTAAAACGA
CTGGATTTGTCGCATAATATGATTGATGCATTGGGGGTCGAGAGATTTTC
GAAGTTACTGTTGGGATCGGGCCGTTGCCCTTCTCTCGAGGAGCTCGATC
TTACGCACAATGCTGTGCGGGAGAAGGAGGCTTGGGAGTTGCAGCGTGCC
ATCCACTTCTGCAGCAGCAGAAGCAGCACCACTATCTCCGCCTTGACAAA
AGCCGGTAGCACGACTACGATTACCACCGTCACGACCTTTTTTTTACAGG
GAGAAAATAAAGAGACTGAAGTCAAAGTGCGGTTGAGCCCAGGGTTGTAC
TGCCAGGTGCTGCTCGAGGGGGAGGAGGAGGAGGAGGAGGTGGGAAGGAG
GGGGAGAGGGGACACGGGGAAATCGGATGCATTAGTCTACAGGCTGATGT
TGTCCGTCTCCGATCTCGTCGATTTTGCCTTTGATTTGTGTGTGGGAGAA
GACGAAGAGTAG

Synonyms

Publications