jgi.p|Nanoce1779_2|599709, mRNA_7699 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599709
Unique Name	mRNA_7699
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1614
Alignment location	scaffold_21:113153..114766 +

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Properties


Property Name	Value
TranscriptId	599795
Track	FilteredModels2
ProteinId	599709

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:113153..114766 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599709	gene_7699	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599709	mRNA_7699-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7699	CDS_7699	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:113153..114766+
coding sequence from alignment at scaffold_21:113153..114766+

mRNA sequence

>mRNA_7699 ID=mRNA_7699|Name=jgi.p|Nanoce1779_2|599709|organism=Nannochloropsis oceanica|type=mRNA|length=1614bp
GGGAGGGAGGGAGAGTAGGGAAGGAGAGTGAACCACCTATGGTGGACAGT
ACAACTTACGACATCCTATTAAATGGGCTTATTCAAAATGGCCGCGTCTC
CACCGCTGCAGTTGTCCATGAAATGATGCGCAAGGCCCGCCATCCACCCA
CCATCTACACCTACTCCTCCCTCCTCCGACTCCAGAAAAGCGCCACTGAC
GTCTATCGTATCTGGGGTCAAGCCCGCAAGAAGTGCCCTCGCCTCAGCCT
CCCTTTCCTCAATCTTCTCATCTATGAGCTTGGGCAGGTCCACAACGATG
TCGCAGGGGCTCTGGCTGCCTTCCGTGCGATTCTTCGTATGGGGAGAAGA
CCGAACACGATTTCGTTCAATTCCTTGTTTTGCGCATTGATGAAAGATGC
CAATGCCACCCTCCCTGCCGCGGATCTCCTTTTTGAAGAACAGCAGCCGC
TGCAGGATGAGGAGGAGGAGGGGATGGAGGAGGAAGAGGATGTTGAAGAG
ACGTCCACGGGGAAATCTGTTGGTGGAGGAAGGCAAGATTTGCCGCGGCA
GCAGCAGCAGTGGCGGCGGCGGCAGGCGTCTTTAGTAGTAGACGAGTGTG
CTTACTATCCTACCGCGCCGGCTCTCTCTCCAGAAACTAGGGAGTTGCTC
TCTCTACTGGACTCCTTTAAAGGCCGCACCCTGTTGGAGACAGCCTTGGC
GGTGCTTCGATGCATGTACGAGCAGGAGATAGACAACAGCGGCAACAACA
TCAAGAACAACCACAAGAACAACAACAAAGGAGGAGGGAAGAAGGGAGAA
TCCTCATTCTCGTCTTCGTCCTCTCCCTTCTCTGCGCGACCCAATGCCCG
GACCTTCACCATCTTAATGGCAGGGATAAGTAAGGCCGAGCTGGGAGCAC
AGGGGACTTCATTATGTGTCGCTTTGTATCGGGAGGCGGAAACCCAGGGG
GTGATGGCGAATGGTATTTTGTGCCACGCCTTGCTGAGATCTTTCGGGAC
CGACGCGGTGAGTGCCTTGGGGTTCTTCAAGAGGGAGCTAAGGGTACTAT
TGAAGATGCTGGATCAGGTGAATCCCCAGGAGGAGAGGGAGGGGGACAAG
GGCGAGGAGATTGAAGGGGAACATGAGACGGAGGAAGATAGGGAGATTGA
TGGGGTGATTACGGTCGGCGGAAACCTTTCGTTGGCTTATATGGCATTGC
TTTACATATGTGGCATCTCCGGTCGGCCGGACCTGGCGCTGCAGCTGCTG
TATGCCATGCAAAGGGATGGGTTACCCAGTGACAGACAGGCCTGGGAGGC
TTTCGAAGCGGGTAAGACGGCACCGGGCGCCACGATCACCACCACCACCT
CTGTGGGTCAGCTTTTGATGGGGCCGTATGAATCTCTGTTGCGGACGGAG
ACAATGGGCTTGGGATGGGAGACGGGCGTGACGCGGGTGCGCATCAAGTT
CTGAAGTCCTGGGGGAAAGTGTAATGTACAAATCATTCAAGAGACAGAGA
GAAAGAGATGAAGGACCAAGAAAGAGTGTTTTTGTTCCTCACCAGACAGT
GCAAGAGTTTTTGTTAGCTGATTGTACACTAATTGACAAAAAGAAACAAA
GAAAGTTGGAAATA

protein sequence of jgi.p|Nanoce1779_2|599709

>mRNA_7699-protein ID=mRNA_7699-protein|Name=jgi.p|Nanoce1779_2|599709|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MVDSTTYDILLNGLIQNGRVSTAAVVHEMMRKARHPPTIYTYSSLLRLQK
SATDVYRIWGQARKKCPRLSLPFLNLLIYELGQVHNDVAGALAAFRAILR
MGRRPNTISFNSLFCALMKDANATLPAADLLFEEQQPLQDEEEEGMEEEE
DVEETSTGKSVGGGRQDLPRQQQQWRRRQASLVVDECAYYPTAPALSPET
RELLSLLDSFKGRTLLETALAVLRCMYEQEIDNSGNNIKNNHKNNNKGGG
KKGESSFSSSSSPFSARPNARTFTILMAGISKAELGAQGTSLCVALYREA
ETQGVMANGILCHALLRSFGTDAVSALGFFKRELRVLLKMLDQVNPQEER
EGDKGEEIEGEHETEEDREIDGVITVGGNLSLAYMALLYICGISGRPDLA
LQLLYAMQRDGLPSDRQAWEAFEAGKTAPGATITTTTSVGQLLMGPYESL
LRTETMGLGWETGVTRVRIKF*

mRNA from alignment at scaffold_21:113153..114766+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7699 ID=mRNA_7699|Name=jgi.p|Nanoce1779_2|599709|organism=Nannochloropsis oceanica|type=mRNA|length=1614bp|location=Sequence derived from alignment at scaffold_21:113153..114766+ (Nannochloropsis oceanica)
GGGAGGGAGGGAGAGTAGGGAAGGAGAGTGAACCACCTATGGTGGACAGT
ACAACTTACGACATCCTATTAAATGGGCTTATTCAAAATGGCCGCGTCTC
CACCGCTGCAGTTGTCCATGAAATGATGCGCAAGGCCCGCCATCCACCCA
CCATCTACACCTACTCCTCCCTCCTCCGACTCCAGAAAAGCGCCACTGAC
GTCTATCGTATCTGGGGTCAAGCCCGCAAGAAGTGCCCTCGCCTCAGCCT
CCCTTTCCTCAATCTTCTCATCTATGAGCTTGGGCAGGTCCACAACGATG
TCGCAGGGGCTCTGGCTGCCTTCCGTGCGATTCTTCGTATGGGGAGAAGA
CCGAACACGATTTCGTTCAATTCCTTGTTTTGCGCATTGATGAAAGATGC
CAATGCCACCCTCCCTGCCGCGGATCTCCTTTTTGAAGAACAGCAGCCGC
TGCAGGATGAGGAGGAGGAGGGGATGGAGGAGGAAGAGGATGTTGAAGAG
ACGTCCACGGGGAAATCTGTTGGTGGAGGAAGGCAAGATTTGCCGCGGCA
GCAGCAGCAGTGGCGGCGGCGGCAGGCGTCTTTAGTAGTAGACGAGTGTG
CTTACTATCCTACCGCGCCGGCTCTCTCTCCAGAAACTAGGGAGTTGCTC
TCTCTACTGGACTCCTTTAAAGGCCGCACCCTGTTGGAGACAGCCTTGGC
GGTGCTTCGATGCATGTACGAGCAGGAGATAGACAACAGCGGCAACAACA
TCAAGAACAACCACAAGAACAACAACAAAGGAGGAGGGAAGAAGGGAGAA
TCCTCATTCTCGTCTTCGTCCTCTCCCTTCTCTGCGCGACCCAATGCCCG
GACCTTCACCATCTTAATGGCAGGGATAAGTAAGGCCGAGCTGGGAGCAC
AGGGGACTTCATTATGTGTCGCTTTGTATCGGGAGGCGGAAACCCAGGGG
GTGATGGCGAATGGTATTTTGTGCCACGCCTTGCTGAGATCTTTCGGGAC
CGACGCGGTGAGTGCCTTGGGGTTCTTCAAGAGGGAGCTAAGGGTACTAT
TGAAGATGCTGGATCAGGTGAATCCCCAGGAGGAGAGGGAGGGGGACAAG
GGCGAGGAGATTGAAGGGGAACATGAGACGGAGGAAGATAGGGAGATTGA
TGGGGTGATTACGGTCGGCGGAAACCTTTCGTTGGCTTATATGGCATTGC
TTTACATATGTGGCATCTCCGGTCGGCCGGACCTGGCGCTGCAGCTGCTG
TATGCCATGCAAAGGGATGGGTTACCCAGTGACAGACAGGCCTGGGAGGC
TTTCGAAGCGGGTAAGACGGCACCGGGCGCCACGATCACCACCACCACCT
CTGTGGGTCAGCTTTTGATGGGGCCGTATGAATCTCTGTTGCGGACGGAG
ACAATGGGCTTGGGATGGGAGACGGGCGTGACGCGGGTGCGCATCAAGTT
CTGAAGTCCTGGGGGAAAGTGTAATGTACAAATCATTCAAGAGACAGAGA
GAAAGAGATGAAGGACCAAGAAAGAGTGTTTTTGTTCCTCACCAGACAGT
GCAAGAGTTTTTGTTAGCTGATTGTACACTAATTGACAAAAAGAAACAAA
GAAAGTTGGAAATA

Coding sequence (CDS) from alignment at scaffold_21:113153..114766+

>mRNA_7699 ID=mRNA_7699|Name=jgi.p|Nanoce1779_2|599709|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at scaffold_21:113153..114766+ (Nannochloropsis oceanica)
ATGGTGGACAGTACAACTTACGACATCCTATTAAATGGGCTTATTCAAAA
TGGCCGCGTCTCCACCGCTGCAGTTGTCCATGAAATGATGCGCAAGGCCC
GCCATCCACCCACCATCTACACCTACTCCTCCCTCCTCCGACTCCAGAAA
AGCGCCACTGACGTCTATCGTATCTGGGGTCAAGCCCGCAAGAAGTGCCC
TCGCCTCAGCCTCCCTTTCCTCAATCTTCTCATCTATGAGCTTGGGCAGG
TCCACAACGATGTCGCAGGGGCTCTGGCTGCCTTCCGTGCGATTCTTCGT
ATGGGGAGAAGACCGAACACGATTTCGTTCAATTCCTTGTTTTGCGCATT
GATGAAAGATGCCAATGCCACCCTCCCTGCCGCGGATCTCCTTTTTGAAG
AACAGCAGCCGCTGCAGGATGAGGAGGAGGAGGGGATGGAGGAGGAAGAG
GATGTTGAAGAGACGTCCACGGGGAAATCTGTTGGTGGAGGAAGGCAAGA
TTTGCCGCGGCAGCAGCAGCAGTGGCGGCGGCGGCAGGCGTCTTTAGTAG
TAGACGAGTGTGCTTACTATCCTACCGCGCCGGCTCTCTCTCCAGAAACT
AGGGAGTTGCTCTCTCTACTGGACTCCTTTAAAGGCCGCACCCTGTTGGA
GACAGCCTTGGCGGTGCTTCGATGCATGTACGAGCAGGAGATAGACAACA
GCGGCAACAACATCAAGAACAACCACAAGAACAACAACAAAGGAGGAGGG
AAGAAGGGAGAATCCTCATTCTCGTCTTCGTCCTCTCCCTTCTCTGCGCG
ACCCAATGCCCGGACCTTCACCATCTTAATGGCAGGGATAAGTAAGGCCG
AGCTGGGAGCACAGGGGACTTCATTATGTGTCGCTTTGTATCGGGAGGCG
GAAACCCAGGGGGTGATGGCGAATGGTATTTTGTGCCACGCCTTGCTGAG
ATCTTTCGGGACCGACGCGGTGAGTGCCTTGGGGTTCTTCAAGAGGGAGC
TAAGGGTACTATTGAAGATGCTGGATCAGGTGAATCCCCAGGAGGAGAGG
GAGGGGGACAAGGGCGAGGAGATTGAAGGGGAACATGAGACGGAGGAAGA
TAGGGAGATTGATGGGGTGATTACGGTCGGCGGAAACCTTTCGTTGGCTT
ATATGGCATTGCTTTACATATGTGGCATCTCCGGTCGGCCGGACCTGGCG
CTGCAGCTGCTGTATGCCATGCAAAGGGATGGGTTACCCAGTGACAGACA
GGCCTGGGAGGCTTTCGAAGCGGGTAAGACGGCACCGGGCGCCACGATCA
CCACCACCACCTCTGTGGGTCAGCTTTTGATGGGGCCGTATGAATCTCTG
TTGCGGACGGAGACAATGGGCTTGGGATGGGAGACGGGCGTGACGCGGGT
GCGCATCAAGTTCTGA

Synonyms

Publications