jgi.p|Nanoce1779_2|599707, mRNA_7697 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599707
Unique NamemRNA_7697
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1901
Alignment locationscaffold_21:111156..113227 -

Link to JBrowse

Properties
Property NameValue
TranscriptId599793
TrackFilteredModels2
ProteinId599707
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:111156..113227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599707gene_7697Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599707mRNA_7697-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7697CDS_7697Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7697 ID=mRNA_7697|Name=jgi.p|Nanoce1779_2|599707|organism=Nannochloropsis oceanica|type=mRNA|length=1901bp
CATTTAATAGGATGTCGTAAGTTGTACTGTCCACCATAGGTGGTTCACTC
TCCTTCCCTACTCTCCCTCCCTCCCTCCCCCCCCTGGTACCACGACCCTG
GTTAGTGCCGTTTTGCCTGTCGCCACCACCACCAGCAGCGGCATTCCCAT
TCCCCGCGATACCATAAAAATATTCGAGTGCCTCGTCTACCCTCCCCGTC
TTCAGCAAGGCATCTAGCAATATGTTATGCGTCACTGCTCGGGGAGTAAT
TCCTAGCCCCCTCCTCTTCACCTCTTCCACCATCGCCTGCGCCTCGTCAA
ACCCCCTTATCCGTGCCAAATGCCCCGCCATGATATTCATCGTCCTCAAA
TCCATCACCTCTTTACCCCTTCCGTCTCTCCGTCCTTTTCTCCGCCCCTC
CTCCTGTTGCGTTTTCATTTTCTCAAACATCTGCAAACCCAGTCCGGGCC
TCACAGCCAGGAGATGCTGCAATTGGATGTTCCGCGTCGTTACGTCCCCC
TCCACACCCTGCTTCTTCATCTGTCGTTCCATCTCCTCAAACAAGCGGTG
CTGCCCCCCTCGTGCCGCGGCACCCAAGAGTGTGTTCCAGCTCACCTCAT
TAGGCCTCACCCCCCACTTAACTTCCGCTGTCTCTAAATAATACGCCGCC
ACATCCATATGCTTATTATGGTCACACAGACCCGCCAATAGAATGTTCAA
CAAGACCACCTTACTGAACCCTTGGTAGGGCAACGAGGCCTTAAAGACTC
GCATTAGTAAATCCAGTTCTCTCCTCCTCCGACACGCACTCATCAGCGTT
GAGAAGGTATCCCACTGTGGCACCCACGGGGCTTCCCCCGGCTGCAGCTC
CTCGGCGCGTTGTAAAACGACACGCATAACATCCCAAGCGATCTCTAACT
CTTGACAGGCCGCTGCGGCTCGTACTAGCGCTTCGAGCACCTCGGTACTC
CCTCCTTCTTTCAACCTCTTTATATCAATTCCACCCTTATTGGTAGATCT
CTGGTTAATGCTTGTTCTGGTGGTAGCACGAAATTCGTCTCGTCGTCGAC
GTCGACGCAGACTCTCTAATAACTCTAGCACCTGTTGCTCGTCTCTATCA
AGCTGAGTCATGGTCCGCCTTGGTGGTGGTGGTGTGGATGGACGCCGCGA
TGCTGGGGCTGCCTTTGTCCGGGATGGTAGTGGTGGTGACGAGGGGGTGC
GGGTGGCTGATTTTAGTGACACTGATGAAGATGATGTGGGTGTAAGCGCC
ACGCGCTTACATTCCCGGGATTCAGCCGTACTATCGGTGCTAGCAGCGAG
GGAGGATGATGATGGTGAGGACATTCGAGAGGAGGAGGATGAGGGTGAGG
AGGAGAAGGAAGCTTTTAGCGACAGAGATGTTGTTTCATCGTCCGCCGGC
TCTGTCTTTCTGTCCGCAAGGATACTGTTGGCGCTGCTGGCGCTGCTGGC
GCTGCTGGTGCTGCTGCTGGTGCTACTGCTGGTGCTGCTGCTTGTGGTGC
TTGCTGTTGTGCTCAACAAGGGACCTACTGCGCCACTTCTTCTTCTCGAT
CTTCTCCTCCTACCCACTTCCTCCTCCCAAAATGGACTCCGGGGCAAAGT
CCACATGTCTTGTCTTCTTGTATGCCCATGTTCTTGCCATGATGAGGAAG
GCGCCGGCGCGTGCCACTGAGGACAGTGGTGACAGGGGGGCAACGGGGGG
CAAAATCCCGTGGTTTTCCGCAACACCAGCAGCACCACGGTTAGCGCTTC
CAGCGAGCTGCCGCTGCCACATCTTCGTCGTCTCTTCATGAGACGGTGTG
GAGATGCTGTGTACTCTCTGATGTCGCTAGTTCATTGTATTAAGGAGGGC
CAGGACCCAGGACTAGGATGATATGCGAGAAGCCGCGGTGCTTCAATCAG
T
back to top

protein sequence of jgi.p|Nanoce1779_2|599707

>mRNA_7697-protein ID=mRNA_7697-protein|Name=jgi.p|Nanoce1779_2|599707|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MVRLGGGGVDGRRDAGAAFVRDGSGGDEGVRVADFSDTDEDDVGVSATRL
HSRDSAVLSVLAAREDDDGEDIREEEDEGEEEKEAFSDRDVVSSSAGSVF
LSARILLALLALLALLVLLLVLLLVLLLVVLAVVLNKGPTAPLLLLDLLL
LPTSSSQNGLRGKVHMSCLLVCPCSCHDEEGAGACH*
back to top

mRNA from alignment at scaffold_21:111156..113227-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7697 ID=mRNA_7697|Name=jgi.p|Nanoce1779_2|599707|organism=Nannochloropsis oceanica|type=mRNA|length=2072bp|location=Sequence derived from alignment at scaffold_21:111156..113227- (Nannochloropsis oceanica)
CATTTAATAGGATGTCGTAAGTTGTACTGTCCACCATAGGTGGTTCACTC
TCCTTCCCTACTCTCCCTCCCTCCCTCCCCCCCCTGGTACCACGACCCTG
GTTAGTGCCGTTTTGCCTGTCGCCACCACCACCAGCAGCGGCATTCCCAT
TCCCCGCGATACCATAAAAATATTCGAGTGCCTCGTCTACCCTCCCCGTC
TTCAGCAAGGCATCTAGCAATATGTTATGCGTCACTGCTCGGGGAGTAAT
TCCTAGCCCCCTCCTCTTCACCTCTTCCACCATCGCCTGCGCCTCGTCAA
ACCCCCTTATCCGTGCCAAATGCCCCGCCATGATATTCATCGTCCTCAAA
TCCATCACCTCTTTACCCCTTCCGTCTCTCCGTCCTTTTCTCCGCCCCTC
CTCCTGTTGCGTTTTCATTTTCTCAAACATCTGCAAACCCAGTCCGGGCC
TCACAGCCAGGAGATGCTGCAATTGGATGTTCCGCGTCGTTACGTCCCCC
TCCACACCCTGCTTCTTCATCTGTCGTTCCATCTCCTCAAACAAGCGGTG
CTGCCCCCCTCGTGCCGCGGCACCCAAGAGTGTGTTCCAGCTCACCTCAT
TAGGCCTCACCCCCCACTTAACTTCCGCTGTCTCTAAATAATACGCCGCC
ACATCCATATGCTTATTATGGTCACACAGACCCGCCAATAGAATGTTCAA
CAAGACCACCTTACTGAACCCTTGGTAGGGCAACGAGGCCTTAAAGACTC
GCATTAGTAAATCCAGTTCTCTCCTCCTCCGACACGCACTCATCAGCGTT
GAGAAGGTATCCCACTGTGGCACCCACGGGGCTTCCCCCGGCTGCAGCTC
CTCGGCGCGTTGTAAAACGACACGCATAACATCCCAAGCGATCTCTAACT
CTTGACAGGCCGCTGCGGCTCGTACTAGCGCTTCGAGCACCTCGGTACTC
CCTCCTTCTTTCAACCTCTTTATATCAATTCCACCCTTATTGGTAGATCT
CTGGTTAATGCTTGTTCTGGTGGTAGCACGAAATTCGTCTCGTCGTCGAC
GTCGACGCAGACTCTCTAATAACTCTAGCACCTGTTGCTCGTCTCTATCA
AGCTGAGTCATGGTCCGCCTTGGTGGTGGTGGTGTGGATGGACGCCGCGA
TGCTGGGGCTGCCTTTGTCCGGGATGGTAGTGGTGGTGACGAGGGGGTGC
GGGTGGCTGATTTTAGTGACACTGATGAAGATGATGTGGGTGTAAGCGCC
ACGCGCTTACATTCCCGGGATTCAGCCGTACTATCGGTGCTAGCAGCGAG
GGAGGATGATGATGGTGAGGACATTCGAGAGGAGGAGGATGAGGGTGAGG
AGGAGAAGGAAGCTTTTAGCGACAGAGATGTTGTTTCATCGTCCGCCGGC
TCTGTCTTTCTGTCCGCAAGGATACTGTTGGCGCTGCTGGCGCTGCTGGC
GCTGCTGGTGCTGCTGCTGGTGCTACTGCTGGTGCTGCTGCTTGTGGTGC
TTGCTGTTGTGCTCAACAAGGGACCTACTGCGCCACTTCTTCTTCTCGAT
CTTCTCCTCCTACCCACTTCCTCCTCCCAAAATGGACTCCGGGGCAAAGT
CCACATGTCTTGTCTTCTTGTATGCCCATGTTCTTGCCATGATGAGGAAG
GCGCCGGCGCGTGCCACTGAGGACAGTGGTGACAGGGGGGCAACGGGGGG
CAAAATCCCGTGGTTTTCCGCAACACCAGCAGCACCACGGTTAGCGCTTC
CAGCGAGCTGCCGCTGCCACATCTTCGTCGTCTCTTCATGAGACGGTGTG
GAGATGCTGTGTACTCTCTGATGTCGCTAGTTCATTGTCTGAAAGGTGGC
AAGGCGGAGGGAGTAAGCATCACATTGGTGGGGAAGGAAGGGATCATGAC
GGCGCGCATGGGCGACAAGGAAACCTCGTTCACAGGATGTATTGACGGCA
ATTTATTCAATCACACAATTGACAGCCGTATGCAGTCCGGTCTACCATCA
CACACGTACATTAAGGAGGGCCAGGACCCAGGACTAGGATGATATGCGAG
AAGCCGCGGTGCTTCAATCAGT
back to top

Coding sequence (CDS) from alignment at scaffold_21:111156..113227-

>mRNA_7697 ID=mRNA_7697|Name=jgi.p|Nanoce1779_2|599707|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at scaffold_21:111156..113227- (Nannochloropsis oceanica)
ATGGTCCGCCTTGGTGGTGGTGGTGTGGATGGACGCCGCGATGCTGGGGC
TGCCTTTGTCCGGGATGGTAGTGGTGGTGACGAGGGGGTGCGGGTGGCTG
ATTTTAGTGACACTGATGAAGATGATGTGGGTGTAAGCGCCACGCGCTTA
CATTCCCGGGATTCAGCCGTACTATCGGTGCTAGCAGCGAGGGAGGATGA
TGATGGTGAGGACATTCGAGAGGAGGAGGATGAGGGTGAGGAGGAGAAGG
AAGCTTTTAGCGACAGAGATGTTGTTTCATCGTCCGCCGGCTCTGTCTTT
CTGTCCGCAAGGATACTGTTGGCGCTGCTGGCGCTGCTGGCGCTGCTGGT
GCTGCTGCTGGTGCTACTGCTGGTGCTGCTGCTTGTGGTGCTTGCTGTTG
TGCTCAACAAGGGACCTACTGCGCCACTTCTTCTTCTCGATCTTCTCCTC
CTACCCACTTCCTCCTCCCAAAATGGACTCCGGGGCAAAGTCCACATGTC
TTGTCTTCTTGTATGCCCATGTTCTTGCCATGATGAGGAAGGCGCCGGCG
CGTGCCACTGA
back to top
Synonyms
Publications