jgi.p|Nanoce1779_2|599705, mRNA_7696 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599705
Unique NamemRNA_7696
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1197
Alignment locationscaffold_21:109388..110998 -

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Properties
Property NameValue
TranscriptId599791
TrackFilteredModels2
ProteinId599705
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:109388..110998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599705gene_7696Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599705mRNA_7696-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7696CDS_7696Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7696 ID=mRNA_7696|Name=jgi.p|Nanoce1779_2|599705|organism=Nannochloropsis oceanica|type=mRNA|length=1197bp
AAAGCCCTCGAGTATCCTGACCGATTTTCTCACAAGCAGTTGCAGTCTCT
TCGCTTCCTCTGCCTCACGACCGAAAATCCCACTGAAACCTGCGGCAAAC
ACTCAATCACAGGCTTTGACAACACAACACCAGCATAATAATGACACCAT
CTACCGGATGTCTGGCTCTGGCGCTGATTCTCTGCTTGTCTCTGGTGCAA
GCCTTCCTGTTACCCTCCCCGACGGCCCCCTGTCCATCTTCCGCTGCGAC
GAGCAGGGCCACCAACGTGTTTGAGCAGCTGCAGCCATACCGGAGTAGCC
GTATAAACAGGCTGTACATGGGTCGTCGCGCCGCCAAGAACGCCGCGCGC
AAGGGCAAATCGGACGCCCTCAAAACCAAAATTTATGCCTCGTACGGGAA
GAAGCTTGTCATGGCGGTCAAGGCTGGGGGCCCCGAACCTGACGTGAATC
GTGCCCTGGCTGTCTTAATCCGCGAGGCAAAGGCCCAGGGTGTGCCGACT
GACAATGTTCAACGGGCCATCCAACGAGGTAGCAGCGCCAACGAGGTTGA
CTACAAGGAGGCGGTGTACGAGGCCTATGGCTACGGTGGAGCCGGAATCA
TTATTAATTGTCTGACAGATAATACGAACCGAGCCAAGACGGAGATCAAT
AATGTCATCAAGAAGTCGTCGGTGAAATTAGGAACAGTAGGGAGTGTGTC
GTATAATTTTGAGAGGAAGGGAAGGCTGGATCTGGCGGGGATGATGGACG
AGGATAGTGTGTTGGAGGCTGCATTAGAGGCAGATGTGGAAGAGGTGGAC
ACCAAAACGAACGAGGAGGAGAACACAACGAGCGTGTGGGTGGATGCGGC
GAGTGTCTCGGGGTTGAGGGAGGTGTTGTTGGAGAGGGGTGTGGAGATCA
AGGCGTCCACGCTGGTGAATGTGCCCAAGGCCCTCGTGGACTGCTCGGAT
GAGGATTTCGAGGGGAACATGAATGTGATTGAGGCACTGGAGGAGCTGGA
CGATGTAGACTCAGTGGAGCATAACGTGGCCATGGAGGATGAGGATGAGG
GGGAGTAAGGGAGGGGGTGGGGGGATGTGGATGGAAATAACAGCACCAAA
GAGAGGAACAAGGGTCAGGCAGGGCAACAGCAGTGCATATTGAAAGGAAA
AGAACGAACATCGACACAGAGAGAAAGTGAAGGGGGGAGAATCGGCG
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protein sequence of jgi.p|Nanoce1779_2|599705

>mRNA_7696-protein ID=mRNA_7696-protein|Name=jgi.p|Nanoce1779_2|599705|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MTPSTGCLALALILCLSLVQAFLLPSPTAPCPSSAATSRATNVFEQLQPY
RSSRINRLYMGRRAAKNAARKGKSDALKTKIYASYGKKLVMAVKAGGPEP
DVNRALAVLIREAKAQGVPTDNVQRAIQRGSSANEVDYKEAVYEAYGYGG
AGIIINCLTDNTNRAKTEINNVIKKSSVKLGTVGSVSYNFERKGRLDLAG
MMDEDSVLEAALEADVEEVDTKTNEEENTTSVWVDAASVSGLREVLLERG
VEIKASTLVNVPKALVDCSDEDFEGNMNVIEALEELDDVDSVEHNVAMED
EDEGE*
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mRNA from alignment at scaffold_21:109388..110998-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7696 ID=mRNA_7696|Name=jgi.p|Nanoce1779_2|599705|organism=Nannochloropsis oceanica|type=mRNA|length=1611bp|location=Sequence derived from alignment at scaffold_21:109388..110998- (Nannochloropsis oceanica)
AAAGCCCTCGAGTATCCTGACCGATTTTCTCACAAGCAGTTGCAGTCTCT
TCGCTTCCTCTGCCTCACGACCGAAAATCCCACTGAAACCTGCGGCAAAC
ACTCAATCACAGGCTTTGACAACACAACACCAGCATAATAATGACACCAT
CTACCGGATGTCTGGCTCTGGCGCTGATTCTCTGCTTGTCTCTGGTGCAA
GCCTTCCTGTTACCCTCCCCGACGGCCCCCTGTCCATCTTCCGCTGCGAC
GAGCAGGGCCACCAACGTGTTTGAGCAGCTGCAGCCATACCGGAGTAGCC
GTATAAACAGGTACATATTATGGTTCAGGAGAATAGAAGAGGCAACGTTT
CAAAAGTGAGATTGGTAGATAAATGGAGCACTGAGAGTGCGAGTGAGGAG
GATAGGGAGGGGGACTAGCCTGCGGGCGTCGATCAAGAAAGACCCTTGCC
AGCCGTGATAGAAAATCACAGCATACTTCAGCACTCTCAAGCCATAAATA
TTTCCAATTAAAATCCATCCATCCACTACAGGCTGTACATGGGTCGTCGC
GCCGCCAAGAACGCCGCGCGCAAGGGCAAATCGGACGCCCTCAAAACCAA
AATTTATGCCTCGTACGGGAAGAAGCTTGTCATGGCGGTCAAGGCTGGGG
GCCCCGAACCTGACGTGAATCGTGCCCTGGCTGTCTTAATCCGCGAGGCA
AAGGCCCAGGGTGTGCCGACTGACAATGTTCAACGGGCCATCCAACGAGG
TAAGCATATATGGGACGGAGGGAGTAGAGACATGTGGGGTGAAAAGGAGA
CTGGAGCAAGCAATTTGGTCTACAAATTGAAGGGACGGCTGTGCAACATT
TCCTGTATTATTCCTTTTTAGTTACGCGTCCCCTTATAGTCTCCCTATTT
TCTCTCTTCGCTTTCCTCCCTCTCTTCGTCCGATCGGAACAGGTAGCAGC
GCCAACGAGGTTGACTACAAGGAGGCGGTGTACGAGGCCTATGGCTACGG
TGGAGCCGGAATCATTATTAATTGTCTGACAGATAATACGAACCGAGCCA
AGACGGAGATCAATAATGTCATCAAGAAGTCGTCGGTGAAATTAGGAACA
GTAGGGAGTGTGTCGTATAATTTTGAGAGGAAGGGAAGGCTGGATCTGGC
GGGGATGATGGACGAGGATAGTGTGTTGGAGGCTGCATTAGAGGCAGATG
TGGAAGAGGTGGACACCAAAACGAACGAGGAGGAGAACACAACGAGCGTG
TGGGTGGATGCGGCGAGTGTCTCGGGGTTGAGGGAGGTGTTGTTGGAGAG
GGGTGTGGAGATCAAGGCGTCCACGCTGGTGAATGTGCCCAAGGCCCTCG
TGGACTGCTCGGATGAGGATTTCGAGGGGAACATGAATGTGATTGAGGCA
CTGGAGGAGCTGGACGATGTAGACTCAGTGGAGCATAACGTGGCCATGGA
GGATGAGGATGAGGGGGAGTAAGGGAGGGGGTGGGGGGATGTGGATGGAA
ATAACAGCACCAAAGAGAGGAACAAGGGTCAGGCAGGGCAACAGCAGTGC
ATATTGAAAGGAAAAGAACGAACATCGACACAGAGAGAAAGTGAAGGGGG
GAGAATCGGCG
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Coding sequence (CDS) from alignment at scaffold_21:109388..110998-

>mRNA_7696 ID=mRNA_7696|Name=jgi.p|Nanoce1779_2|599705|organism=Nannochloropsis oceanica|type=CDS|length=2754bp|location=Sequence derived from alignment at scaffold_21:109388..110998- (Nannochloropsis oceanica)
GTAGCAGCGCCAACGAGGTTGACTACAAGGAGGCGGTGTACGAGGCCTAT
GGCTACGGTGGAGCCGGAATCATTATTAATTGTCTGACAGATAATACGAA
CCGAGCCAAGACGGAGATCAATAATGTCATCAAGAAGTCGTCGGTGAAAT
TAGGAACAGTAGGGAGTGTGTCGTATAATTTTGAGAGGAAGGGAAGGCTG
GATCTGGCGGGGATGATGGACGAGGATAGTGTGTTGGAGGCTGCATTAGA
GGCAGATGTGGAAGAGGTGGACACCAAAACGAACGAGGAGGAGAACACAA
CGAGCGTGTGGGTGGATGCGGCGAGTGTCTCGGGGTTGAGGGAGGTGTTG
TTGGAGAGGGGTGTGGAGATCAAGGCGTCCACGCTGGTGAATGTGCCCAA
GGCCCTCGTGGACTGCTCGGATGAGGATTTCGAGGGGAACATGAATGTGA
TTGAGGCACTGGAGGAGCTGGACGATGTAGACTCAGTGGAGCATAACGTG
GCCATGGAGGATGAGGATGAGGGGGAGTAAGCTGTACATGGGTCGTCGCG
CCGCCAAGAACGCCGCGCGCAAGGGCAAATCGGACGCCCTCAAAACCAAA
ATTTATGCCTCGTACGGGAAGAAGCTTGTCATGGCGGTCAAGGCTGGGGG
CCCCGAACCTGACGTGAATCGTGCCCTGGCTGTCTTAATCCGCGAGGCAA
AGGCCCAGGGTGTGCCGACTGACAATGTTCAACGGGCCATCCAACGAGAT
GACACCATCTACCGGATGTCTGGCTCTGGCGCTGATTCTCTGCTTGTCTC
TGGTGCAAGCCTTCCTGTTACCCTCCCCGACGGCCCCCTGTCCATCTTCC
GCTGCGACGAGCAGGGCCACCAACGTGTTTGAGCAGCTGCAGCCATACCG
GAGTAGCCGTATAAACAGGTAGCAGCGCCAACGAGGTTGACTACAAGGAG
GCGGTGTACGAGGCCTATGGCTACGGTGGAGCCGGAATCATTATTAATTG
TCTGACAGATAATACGAACCGAGCCAAGACGGAGATCAATAATGTCATCA
AGAAGTCGTCGGTGAAATTAGGAACAGTAGGGAGTGTGTCGTATAATTTT
GAGAGGAAGGGAAGGCTGGATCTGGCGGGGATGATGGACGAGGATAGTGT
GTTGGAGGCTGCATTAGAGGCAGATGTGGAAGAGGTGGACACCAAAACGA
ACGAGGAGGAGAACACAACGAGCGTGTGGGTGGATGCGGCGAGTGTCTCG
GGGTTGAGGGAGGTGTTGTTGGAGAGGGGTGTGGAGATCAAGGCGTCCAC
GCTGGTGAATGTGCCCAAGGCCCTCGTGGACTGCTCGGATGAGGATTTCG
AGGGGAACATGAATGTGATTGAGGCACTGGAGGAGCTGGACGATGTAGAC
TCAGTGGAGCATAACGTGGCCATGGAGGATGAGGATGAGGGGGAGTAAGC
TGTACATGGGTCGTCGCGCCGCCAAGAACGCCGCGCGCAAGGGCAAATCG
GACGCCCTCAAAACCAAAATTTATGCCTCGTACGGGAAGAAGCTTGTCAT
GGCGGTCAAGGCTGGGGGCCCCGAACCTGACGTGAATCGTGCCCTGGCTG
TCTTAATCCGCGAGGCAAAGGCCCAGGGTGTGCCGACTGACAATGTTCAA
CGGGCCATCCAACGAGATGACACCATCTACCGGATGTCTGGCTCTGGCGC
TGATTCTCTGCTTGTCTCTGGTGCAAGCCTTCCTGTTACCCTCCCCGACG
GCCCCCTGTCCATCTTCCGCTGCGACGAGCAGGGCCACCAACGTGTTTGA
GCAGCTGCAGCCATACCGGAGTAGCCGTATAAACAGGTAGCAGCGCCAAC
GAGGTTGACTACAAGGAGGCGGTGTACGAGGCCTATGGCTACGGTGGAGC
CGGAATCATTATTAATTGTCTGACAGATAATACGAACCGAGCCAAGACGG
AGATCAATAATGTCATCAAGAAGTCGTCGGTGAAATTAGGAACAGTAGGG
AGTGTGTCGTATAATTTTGAGAGGAAGGGAAGGCTGGATCTGGCGGGGAT
GATGGACGAGGATAGTGTGTTGGAGGCTGCATTAGAGGCAGATGTGGAAG
AGGTGGACACCAAAACGAACGAGGAGGAGAACACAACGAGCGTGTGGGTG
GATGCGGCGAGTGTCTCGGGGTTGAGGGAGGTGTTGTTGGAGAGGGGTGT
GGAGATCAAGGCGTCCACGCTGGTGAATGTGCCCAAGGCCCTCGTGGACT
GCTCGGATGAGGATTTCGAGGGGAACATGAATGTGATTGAGGCACTGGAG
GAGCTGGACGATGTAGACTCAGTGGAGCATAACGTGGCCATGGAGGATGA
GGATGAGGGGGAGTAAGCTGTACATGGGTCGTCGCGCCGCCAAGAACGCC
GCGCGCAAGGGCAAATCGGACGCCCTCAAAACCAAAATTTATGCCTCGTA
CGGGAAGAAGCTTGTCATGGCGGTCAAGGCTGGGGGCCCCGAACCTGACG
TGAATCGTGCCCTGGCTGTCTTAATCCGCGAGGCAAAGGCCCAGGGTGTG
CCGACTGACAATGTTCAACGGGCCATCCAACGAGATGACACCATCTACCG
GATGTCTGGCTCTGGCGCTGATTCTCTGCTTGTCTCTGGTGCAAGCCTTC
CTGTTACCCTCCCCGACGGCCCCCTGTCCATCTTCCGCTGCGACGAGCAG
GGCCACCAACGTGTTTGAGCAGCTGCAGCCATACCGGAGTAGCCGTATAA
ACAG
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Synonyms
Publications