jgi.p|Nanoce1779_2|599701, mRNA_7695 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599701
Unique Name	mRNA_7695
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1162
Alignment location	scaffold_21:107401..108708 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599787
Track	FilteredModels2
ProteinId	599701

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:107401..108708 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599701	gene_7695	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599701	mRNA_7695-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7695	CDS_7695	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:107401..108708+
coding sequence from alignment at scaffold_21:107401..108708+

mRNA sequence

>mRNA_7695 ID=mRNA_7695|Name=jgi.p|Nanoce1779_2|599701|organism=Nannochloropsis oceanica|type=mRNA|length=1162bp
GGGAGGGGGGGGGGTGAGGTGGACAACGAGGAATTTTACAAGATCCTGGG
CGTGGCCAAAGACGCAAATGAGGGCGAAATCAAAAAGGCGTACCGAAAGC
TGGCTTTGAAGAACCACCCAGACAAGGGCGGGGACCCGGAGAAGTTCAAG
GAGATAACCATGGCATACGAAGTTTTATCCGACCCGGACAAGCGCTCGCG
TTACGACCAGTACGGGAAAGATGGTCTGGAGGAAGGGAGCACGCACAACC
CTGAAGACATTTTCTCGATGTTTTTCGGGGGGGGCGGACGACGGGGGCCT
AGCGGGCCTAAAAAGGGGGAGGATATCCGACACCCCTTGAAGGTCACGTT
GGATGACCTCTGTGTGGGGCCTGTGAAGGGGTTGGGGGGAAGCGGGGGGC
GGAACGGCAGTGTGACGGGTGCAATGGCCGGGGGGGTGACGATCCAATTG
AGGCAAATCGGCCCGGGGATGGTGCAGCAGAGTCAGATGCCCTGCTCGGC
GTGCAGGGGGGCGGGGAAGACGATGAGTGAGAAGGATAAGTGTCGGGAGT
GCCGGGGGAGGAAGGTTGTGAAGGAGCGGAAGTTGCTGGAGGTGCACATC
GAGAAGGGGATGAAGCATAACCAGAAGATAGTGTTCCACGGGGAGGCGGA
CGAGGCTCCCGGCACCATTCCTGGCGACATAATCTTCCTGGTCCAGGAGA
AGGACCATGAGGTCTTCACGCGGAAGAACAACGATTTAATCATGGAGAAG
ACGCTGTCTCTGGCCGAGGCCTTGGTGGGGTACTGCTTCCTCATTAAGCA
CCTGGACGGCCGTGTCATCAAGTGCGAGAGTGCGAAACCCGGAGATGTGG
TCAAACCCGGGGACATCCGCATGATCCCTGAAGAAGGCATGCCTCTTCAC
GGCTCCCCCTTCACCAAAGGTCGACTGTTCGTCGTCTTTAAGGTGGAATT
CCCGGTCCCTGGGACGTTCAACGCGGCGCAGCTCAAGGCGTTGGAGGCGG
TGTTGCCCCCGAGGGATATGCCGAAGCTGACGGGTGAGGAGGAGGAGGTG
GAGATGATTGCAGTAGAGGCGAGTCAGATTGGGGCCGGGAGGGACGATGG
TTCTGGGATGGAGGAGGATGACGACGGGCGGCCTCAAAGGGTGCAGTGCC
AGAACATGTAAA

protein sequence of jgi.p|Nanoce1779_2|599701

>mRNA_7695-protein ID=mRNA_7695-protein|Name=jgi.p|Nanoce1779_2|599701|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MAYEVLSDPDKRSRYDQYGKDGLEEGSTHNPEDIFSMFFGGGGRRGPSGP
KKGEDIRHPLKVTLDDLCVGPVKGLGGSGGRNGSVTGAMAGGVTIQLRQI
GPGMVQQSQMPCSACRGAGKTMSEKDKCRECRGRKVVKERKLLEVHIEKG
MKHNQKIVFHGEADEAPGTIPGDIIFLVQEKDHEVFTRKNNDLIMEKTLS
LAEALVGYCFLIKHLDGRVIKCESAKPGDVVKPGDIRMIPEEGMPLHGSP
FTKGRLFVVFKVEFPVPGTFNAAQLKALEAVLPPRDMPKLTGEEEEVEMI
AVEASQIGAGRDDGSGMEEDDDGRPQRVQCQNM*

mRNA from alignment at scaffold_21:107401..108708+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7695 ID=mRNA_7695|Name=jgi.p|Nanoce1779_2|599701|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp|location=Sequence derived from alignment at scaffold_21:107401..108708+ (Nannochloropsis oceanica)
GGGAGGGGGGGGGGTGAGGTGGACAACGAGGAATTTTACAAGATCCTGGG
CGTGGCCAAAGACGCAAATGAGGGCGAAATCAAAAAGGCGTACCGAAAGC
TGGCTTTGAAGAACCACCCAGACAAGGGCGGGGACCCGGAGAAGTTCAAG
GAGATAACCATGGTAAGTCGTGCTTATTAATTTTACTTTTTCATCTTACA
TGCTGCTAATTGGTATTTTTTTACCCTTAACCTTAACCCCTTCACCCTCC
CTCCTCTCCACCTAGGCATACGAAGTTTTATCCGACCCGGACAAGCGCTC
GCGTTACGACCAGTACGGGAAAGATGGTCTGGAGGAAGGGAGCACGCACA
ACCCTGAAGACATTTTCTCGATGTTTTTCGGGGGGGGCGGACGACGGGGG
CCTAGCGGGCCTAAAAAGGGGGAGGATATCCGACACCCCTTGAAGGTCAC
GTTGGATGACCTGTACAACGGGAAGAAATGCCATCTGGCCATTAACCGCG
ATAAGCTGTGTGGGGCCTGTGAAGGGGTTGGGGGGAAGCGGGGGGCGGAA
CGGCAGTGTGACGGGTGCAATGGCCGGGGGGGTGACGATCCAATTGAGGC
AAATCGGCCCGGGGATGGTGCAGCAGAGTCAGATGCCCTGCTCGGCGTGC
AGGGGGGCGGGGAAGACGATGAGTGAGAAGGATAAGTGTCGGGAGTGCCG
GGGGAGGAAGGTTGTGAAGGAGCGGAAGTTGCTGGAGGTGCACATCGAGA
AGGGGATGAAGCATAACCAGAAGATAGTGTTCCACGGGGAGGCGGACGAG
GCTCCCGGCACCATTCCTGGCGACATAATCTTCCTGGTCCAGGAGAAGGA
CCATGAGGTCTTCACGCGGAAGAACAACGATTTAATCATGGAGAAGACGC
TGTCTCTGGCCGAGGCCTTGGTGGGGTACTGCTTCCTCATTAAGCACCTG
GACGGCCGTGTCATCAAGTGCGAGAGTGCGAAACCCGGAGATGTGGTCAA
ACCCGGGGACATCCGCATGATCCCTGAAGAAGGCATGCCTCTTCACGGCT
CCCCCTTCACCAAAGGTCGACTGTTCGTCGTCTTTAAGGTGGAATTCCCG
GTCCCTGGGACGTTCAACGCGGCGCAGCTCAAGGCGTTGGAGGCGGTGTT
GCCCCCGAGGGATATGCCGAAGCTGACGGGTGAGGAGGAGGAGGTGGAGA
TGATTGCAGTAGAGGCGAGTCAGATTGGGGCCGGGAGGGACGATGGTTCT
GGGATGGAGGAGGATGACGACGGGCGGCCTCAAAGGGTGCAGTGCCAGAA
CATGTAAA

Coding sequence (CDS) from alignment at scaffold_21:107401..108708+

>mRNA_7695 ID=mRNA_7695|Name=jgi.p|Nanoce1779_2|599701|organism=Nannochloropsis oceanica|type=CDS|length=3006bp|location=Sequence derived from alignment at scaffold_21:107401..108708+ (Nannochloropsis oceanica)
ATGGCATACGAAGTTTTATCCGACCCGGACAAGCGCTCGCGTTACGACCA
GTACGGGAAAGATGGTCTGGAGGAAGGGAGCACGCACAACCCTGAAGACA
TTTTCTCGATGTTTTTCGGGGGGGGCGGACGACGGGGGCCTAGCGGGCCT
AAAAAGGGGGAGGATATCCGACACCCCTTGAAGGTCACGTTGGATGACCT
CTGTGTGGGGCCTGTGAAGGGGTTGGGGGGAAGCGGGGGGCGGAACGGCA
GTGTGACGGGTGCAATGGCCGGGGGGGTGACGATCCAATTGAGGCAAATC
GGCCCGGGGATGGTGCAGCAGAGTCAGATGCCCTGCTCGGCGTGCAGGGG
GGCGGGGAAGACGATGAGTGAGAAGGATAAGTGTCGGGAGTGCCGGGGGA
GGAAGGTTGTGAAGGAGCGGAAGTTGCTGGAGGTGCACATCGAGAAGGGG
ATGAAGCATAACCAGAAGATAGTGTTCCACGGGGAGGCGGACGAGGCTCC
CGGCACCATTCCTGGCGACATAATCTTCCTGGTCCAGGAGAAGGACCATG
AGGTCTTCACGCGGAAGAACAACGATTTAATCATGGAGAAGACGCTGTCT
CTGGCCGAGGCCTTGGTGGGGTACTGCTTCCTCATTAAGCACCTGGACGG
CCGTGTCATCAAGTGCGAGAGTGCGAAACCCGGAGATGTGGTCAAACCCG
GGGACATCCGCATGATCCCTGAAGAAGGCATGCCTCTTCACGGCTCCCCC
TTCACCAAAGGTCGACTGTTCGTCGTCTTTAAGGTGGAATTCCCGGTCCC
TGGGACGTTCAACGCGGCGCAGCTCAAGGCGTTGGAGGCGGTGTTGCCCC
CGAGGGATATGCCGAAGCTGACGGGTGAGGAGGAGGAGGTGGAGATGATT
GCAGTAGAGGCGAGTCAGATTGGGGCCGGGAGGGACGATGGTTCTGGGAT
GGAGGAGGATGACGACGGGCGGCCTCAAAGGGTGCAGTGCCAGAACATGT
AAATGGCATACGAAGTTTTATCCGACCCGGACAAGCGCTCGCGTTACGAC
CAGTACGGGAAAGATGGTCTGGAGGAAGGGAGCACGCACAACCCTGAAGA
CATTTTCTCGATGTTTTTCGGGGGGGGCGGACGACGGGGGCCTAGCGGGC
CTAAAAAGGGGGAGGATATCCGACACCCCTTGAAGGTCACGTTGGATGAC
CTCTGTGTGGGGCCTGTGAAGGGGTTGGGGGGAAGCGGGGGGCGGAACGG
CAGTGTGACGGGTGCAATGGCCGGGGGGGTGACGATCCAATTGAGGCAAA
TCGGCCCGGGGATGGTGCAGCAGAGTCAGATGCCCTGCTCGGCGTGCAGG
GGGGCGGGGAAGACGATGAGTGAGAAGGATAAGTGTCGGGAGTGCCGGGG
GAGGAAGGTTGTGAAGGAGCGGAAGTTGCTGGAGGTGCACATCGAGAAGG
GGATGAAGCATAACCAGAAGATAGTGTTCCACGGGGAGGCGGACGAGGCT
CCCGGCACCATTCCTGGCGACATAATCTTCCTGGTCCAGGAGAAGGACCA
TGAGGTCTTCACGCGGAAGAACAACGATTTAATCATGGAGAAGACGCTGT
CTCTGGCCGAGGCCTTGGTGGGGTACTGCTTCCTCATTAAGCACCTGGAC
GGCCGTGTCATCAAGTGCGAGAGTGCGAAACCCGGAGATGTGGTCAAACC
CGGGGACATCCGCATGATCCCTGAAGAAGGCATGCCTCTTCACGGCTCCC
CCTTCACCAAAGGTCGACTGTTCGTCGTCTTTAAGGTGGAATTCCCGGTC
CCTGGGACGTTCAACGCGGCGCAGCTCAAGGCGTTGGAGGCGGTGTTGCC
CCCGAGGGATATGCCGAAGCTGACGGGTGAGGAGGAGGAGGTGGAGATGA
TTGCAGTAGAGGCGAGTCAGATTGGGGCCGGGAGGGACGATGGTTCTGGG
ATGGAGGAGGATGACGACGGGCGGCCTCAAAGGGTGCAGTGCCAGAACAT
GTAAATGGCATACGAAGTTTTATCCGACCCGGACAAGCGCTCGCGTTACG
ACCAGTACGGGAAAGATGGTCTGGAGGAAGGGAGCACGCACAACCCTGAA
GACATTTTCTCGATGTTTTTCGGGGGGGGCGGACGACGGGGGCCTAGCGG
GCCTAAAAAGGGGGAGGATATCCGACACCCCTTGAAGGTCACGTTGGATG
ACCTCTGTGTGGGGCCTGTGAAGGGGTTGGGGGGAAGCGGGGGGCGGAAC
GGCAGTGTGACGGGTGCAATGGCCGGGGGGGTGACGATCCAATTGAGGCA
AATCGGCCCGGGGATGGTGCAGCAGAGTCAGATGCCCTGCTCGGCGTGCA
GGGGGGCGGGGAAGACGATGAGTGAGAAGGATAAGTGTCGGGAGTGCCGG
GGGAGGAAGGTTGTGAAGGAGCGGAAGTTGCTGGAGGTGCACATCGAGAA
GGGGATGAAGCATAACCAGAAGATAGTGTTCCACGGGGAGGCGGACGAGG
CTCCCGGCACCATTCCTGGCGACATAATCTTCCTGGTCCAGGAGAAGGAC
CATGAGGTCTTCACGCGGAAGAACAACGATTTAATCATGGAGAAGACGCT
GTCTCTGGCCGAGGCCTTGGTGGGGTACTGCTTCCTCATTAAGCACCTGG
ACGGCCGTGTCATCAAGTGCGAGAGTGCGAAACCCGGAGATGTGGTCAAA
CCCGGGGACATCCGCATGATCCCTGAAGAAGGCATGCCTCTTCACGGCTC
CCCCTTCACCAAAGGTCGACTGTTCGTCGTCTTTAAGGTGGAATTCCCGG
TCCCTGGGACGTTCAACGCGGCGCAGCTCAAGGCGTTGGAGGCGGTGTTG
CCCCCGAGGGATATGCCGAAGCTGACGGGTGAGGAGGAGGAGGTGGAGAT
GATTGCAGTAGAGGCGAGTCAGATTGGGGCCGGGAGGGACGATGGTTCTG
GGATGGAGGAGGATGACGACGGGCGGCCTCAAAGGGTGCAGTGCCAGAAC
ATGTAA

Synonyms

Publications