jgi.p|Nanoce1779_2|632428, mRNA_7693 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|632428
Unique Name	mRNA_7693
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1859
Alignment location	scaffold_21:102833..105034 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	632514
Track	FilteredModels2
ProteinId	632428

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:102833..105034 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632428	gene_7693	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632428	mRNA_7693-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7693	CDS_7693	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:102833..105034+
coding sequence from alignment at scaffold_21:102833..105034+

mRNA sequence

>mRNA_7693 ID=mRNA_7693|Name=jgi.p|Nanoce1779_2|632428|organism=Nannochloropsis oceanica|type=mRNA|length=1859bp
CAGACTGACTGCCCAGCCCCAAAAACGTTGCTGCCTCGCCGATGATTCAA
GCGTGTTGCACGACCGCCACCTCATTCTATGCCTTACCACACCAGAAATC
CTAGCCCCAACACACTCCACGCCCACGCACCACGCACATGCACTGACCCA
AGCAAGGCACAAGGATCTTGCCGTTCTTCTGGTAGCCATCGCTATGTCCA
AACGCAGCGCCCCTGTCGAGAGTTCCTCCTCCGCCTCCATCTCTTCAACT
TCGTCATCTACCTCGGCCTCTTCAGCAGCCGCTGCCTCCTCCCCTTCTCC
CATCACCGCGACAAACGCCAGCACGAGCGCTGTCTCGGTCGCAGTCAAGC
GCACTCGAGGGGCCATCGCCGCCGCCGCCACTGCTGCCGCTGCATCCACC
AGAAGCCTACCTTTGCTTGAAATCCCAAAGCAAGTGACCTTCTCGGTAAA
AGAAACTGCGCCTCAATTGTCGTTGTCGCGGGACTTGTTAGAGGTGACAG
GCTGTCGGGCGGGGGTACCGCATGAGCAAGGCGAGTGATTCTGTCTACGC
GGGCAACTGGTACTGGGAATGCGAAATCCTCGAGACACTTCCCACCACAA
CTCCTACTGCGGACAGTCACAATGAGGATTACATAGGAGCAGCAGTAGAA
GACCAACCACATTTTCGAGTTGGATGGGCAACGAAGCAAGGCAACATCCA
AGCTCCGGTCGGATACGACAAACACAGCTTCGGCTACCGCGACGTAAGGG
GCTCCAAAATCCACAAAAGCGAGCGTGTGGACCACTATGGTGAGGCGTAT
GGCCCTGGAGACATAATAGGATGCATGATTTGCTTGCCCGTCCTACCAGA
ACACATGCAGGAGACATCTTTAAATGGGAGCAGCAATCCTCTACTGCAGG
GGGGGGTCTTCCCCCACCCCTTTCTCAACCGCGAAGACAGCTACAACAGT
GCTTCAGGCAGTGTGGCTACCTCAGCTAGCGGTGGTGTTGGTTGCGTTGG
TGGTGCTGTGGGTGGCGGTGGAAGCAGCTACAGCAATGGTAGCAATGGTA
ATGGCACCACCACCACCCTGGACACCACCACAACCAAGGACACCGCCAAC
AACAATTACAACAACAACAATGACAACAATAACAACAGTAATGACAATAG
AAATAACAATTCCAGCAGCAGCAATGGTGGGAATGCTGCGGGCGAAATAG
AGGGTGGTATTGAGGATGAGATACTCAGGAAGGAGTTGGAGGCCTTGGGG
AACCATGTAAGGTTTTTTAAGAATGGAAAGGACCAGGGTCCGGCGTACAC
GCAGATTGTGGGAGCGCGCTACTACCCTGCTGCCTCCATTTTCCTCACAG
GAAGGGTGCGTGGTAACTACGGTCCTTCCTGGATCTGCCCTCCAGAGACT
TCCATCCCTTTTTCGCCCATGTCTGCTGTCAAAGAAAGCTTGAAACGAGA
TGAGTTGAACTTGTACAACCAGGGGGTGAATGAACGGAGGGCAGCATTGA
TGGTGCGCAGAAAGCTGCTGCTGCAGCAGCAGCAGCAGCAAGAACAACAG
CAGGCGGAGATTGCGCAGCAGCATCTGAAAAAGGAGGAGAAGGAGGATGC
ATAAAAATGGAGACGTTAGGGAAACAGGGGTTGGCGAGCGTGGAGTGGGA
GCAGGGCGGGAGGGGGGAAGATGATGATGACTGTAAAAGATACAAAAGTA
CAGTACCAAGCATGTAATTTTTGATTTGACATCATTTCTTTATCTCCGTG
GCTATACATACGAGTTATTATTCATCCATCTCCTTTAAGTCCACCCTAAC
CTTCGTGCTTTCCTCTCTCTTAGCCCCTCCCCCCTCCTCCCCTTCCTCCC
ATATTCCCC

protein sequence of jgi.p|Nanoce1779_2|632428

>mRNA_7693-protein ID=mRNA_7693-protein|Name=jgi.p|Nanoce1779_2|632428|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MSKASDSVYAGNWYWECEILETLPTTTPTADSHNEDYIGAAVEDQPHFRV
GWATKQGNIQAPVGYDKHSFGYRDVRGSKIHKSERVDHYGEAYGPGDIIG
CMICLPVLPEHMQETSLNGSSNPLLQGGVFPHPFLNREDSYNSASGSVAT
SASGGVGCVGGAVGGGGSSYSNGSNGNGTTTTLDTTTTKDTANNNYNNNN
DNNNNSNDNRNNNSSSSNGGNAAGEIEGGIEDEILRKELEALGNHVRFFK
NGKDQGPAYTQIVGARYYPAASIFLTGRVRGNYGPSWICPPETSIPFSPM
SAVKESLKRDELNLYNQGVNERRAALMVRRKLLLQQQQQQEQQQAEIAQQ
HLKKEEKEDA*

mRNA from alignment at scaffold_21:102833..105034+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7693 ID=mRNA_7693|Name=jgi.p|Nanoce1779_2|632428|organism=Nannochloropsis oceanica|type=mRNA|length=2202bp|location=Sequence derived from alignment at scaffold_21:102833..105034+ (Nannochloropsis oceanica)
CAGACTGACTGCCCAGCCCCAAAAACGTTGCTGCCTCGCCGATGATTCAA
GCGTGTTGCACGACCGCCACCTCATTCTATGCCTTACCACACCAGAAATC
CTAGCCCCAACACACTCCACGCCCACGCACCACGCACATGCACTGACCCA
AGCAAGGCACAAGGATCTTGCCGTTCTTCTGGTAGCCATCGCTATGTCCA
AACGCAGCGCCCCTGTCGAGGTAAAACCCATTAAGCGCGGCCTCCCCACT
TCTCTCAGCGTACTTCTCTCCACACGACCCTTACCTTCCCTCCGGCCCCG
CACAACAATTCAGAGTTCCTCCTCCGCCTCCATCTCTTCAACTTCGTCAT
CTACCTCGGCCTCTTCAGCAGCCGCTGCCTCCTCCCCTTCTCCCATCACC
GCGACAAACGCCAGCACGAGCGCTGTCTCGGTCGCAGTCAAGCGCACTCG
AGGGGCCATCGCCGCCGCCGCCACTGCTGCCGCTGCATCCACCAGAAGCC
TACCTTTGCTTGAAATCCCAAAGCAAGTGACCTTCTCGGTAAAAGAAACT
GCGCCTCAATTGTCGTTGTCGCGGGACTTGTTAGAGGTGACAGGCTGTCG
GGCGGGGGTACCGCATGAGCAAGGCGAGTGATTCTGTCTACGCGGGCAAC
TGGTACTGGGAATGCGAAATCCTCGAGACACTTCCCACCACAACTCCTAC
TGCGGACAGTCACAATGAGGATTACATAGGAGCAGCAGTAGAAGACCAAC
CACATTTTCGAGTTGGATGGGCAACGAAGCAAGGCAACATCCAAGCTCCG
GTCGGATACGACAAACACAGCTTCGGCTACCGCGACGTAAGGGGCTCCAA
AATCCACAAAAGCGAGCGTGTGGACCACTATGGTGAGGCGTATGGCCCTG
GAGACATAATAGGATGCATGATTTGCTTGCCCGTCCTACCAGAACACATG
CAGGAGACATCTTTAAATGGGAGCAGCAATCCTCTACTGCAGGGGGGGGT
CTTCCCCCACCCCTTTCTCAACCGCGAAGACAGCTACAACAGTGCTTCAG
GCAGTGTGGCTACCTCAGCTAGCGGTGGTGTTGGTTGCGTTGGTGGTGCT
GTGGGTGGCGGTGGAAGCAGCTACAGCAATGGTAGCAATGGTAATGGCAC
CACCACCACCCTGGACACCACCACAACCAAGGACACCGCCAACAACAATT
ACAACAACAACAATGACAACAATAACAACAGTAATGACAATAGAAATAAC
AATTCCAGCAGCAGCAATGGTGGGAATGCTGCGGGCGAAATAGAGGGTGG
TATTGAGGATGAGATACTCAGGAAGGAGTTGGAGGCCTTGGGGAACCATG
TAAGGTTTTTTAAGAATGGAAAGGACCAGGGTCCGGCGTACACGCAGATT
GTGGGAGGTAAAGAGGGGACGAGTGGGAGGAAAGAAGAGGGAGAGGAGGG
GAGGGAAGAAGGAAGGTGGTGGGTGATGGAGGGAGCTGATGGTAGTCGTT
TTGCTATATGGCAGTTTAGGTGCATTACTATGTTTACTTTCATTTTCGGC
ATCTCTCATGTTCCCCGCCTCTTTATCTCTCTTTCTTTCTCATACACACA
TACACACGTTCTCATCCATATTCTCCTCAATCATTTCCACTCCGTCCCTC
CCCGCAGCGCGCTACTACCCTGCTGCCTCCATTTTCCTCACAGGAAGGGT
GCGTGGTAACTACGGTCCTTCCTGGATCTGCCCTCCAGAGACTTCCATCC
CTTTTTCGCCCATGTCTGCTGTCAAAGAAAGCTTGAAACGAGATGAGTTG
AACTTGTACAACCAGGGGGTGAATGAACGGAGGGCAGCATTGATGGTGCG
CAGAAAGCTGCTGCTGCAGCAGCAGCAGCAGCAAGAACAACAGCAGGCGG
AGATTGCGCAGCAGCATCTGAAAAAGGAGGAGAAGGAGGATGCATAAAAA
TGGAGACGTTAGGGAAACAGGGGTTGGCGAGCGTGGAGTGGGAGCAGGGC
GGGAGGGGGGAAGATGATGATGACTGTAAAAGATACAAAAGTACAGTACC
AAGCATGTAATTTTTGATTTGACATCATTTCTTTATCTCCGTGGCTATAC
ATACGAGTTATTATTCATCCATCTCCTTTAAGTCCACCCTAACCTTCGTG
CTTTCCTCTCTCTTAGCCCCTCCCCCCTCCTCCCCTTCCTCCCATATTCC
CC

Coding sequence (CDS) from alignment at scaffold_21:102833..105034+

>mRNA_7693 ID=mRNA_7693|Name=jgi.p|Nanoce1779_2|632428|organism=Nannochloropsis oceanica|type=CDS|length=2166bp|location=Sequence derived from alignment at scaffold_21:102833..105034+ (Nannochloropsis oceanica)
ATGAGCAAGGCGAGTGATTCTGTCTACGCGGGCAACTGGTACTGGGAATG
CGAAATCCTCGAGACACTTCCCACCACAACTCCTACTGCGGACAGTCACA
ATGAGGATTACATAGGAGCAGCAGTAGAAGACCAACCACATTTTCGAGTT
GGATGGGCAACGAAGCAAGGCAACATCCAAGCTCCGGTCGGATACGACAA
ACACAGCTTCGGCTACCGCGACGTAAGGGGCTCCAAAATCCACAAAAGCG
AGCGTGTGGACCACTATGGTGAGGCGTATGGCCCTGGAGACATAATAGGA
TGCATGATTTGCTTGCCCGTCCTACCAGAACACATGCAGGAGACATCTTT
AAATGGGAGCAGCAATCCTCTACTGCAGGGGGGGGTCTTCCCCCACCCCT
TTCTCAACCGCGAAGACAGCTACAACAGTGCTTCAGGCAGTGTGGCTACC
TCAGCTAGCGGTGGTGTTGGTTGCGTTGGTGGTGCTGTGGGTGGCGGTGG
AAGCAGCTACAGCAATGGTAGCAATGGTAATGGCACCACCACCACCCTGG
ACACCACCACAACCAAGGACACCGCCAACAACAATTACAACAACAACAAT
GACAACAATAACAACAGTAATGACAATAGAAATAACAATTCCAGCAGCAG
CAATGGTGGGAATGCTGCGGGCGAAATAGAGGGTGGTATTGAGGATGAGA
TACTCAGGAAGGAGTTGGAGGCCTTGGGGAACCATGTAAGGTTTTTTAAG
AATGGAAAGGACCAGGGTCCGGCGTACACGCAGATTGTGGGAGCGCGCTA
CTACCCTGCTGCCTCCATTTTCCTCACAGGAAGGGTGCGTGGTAACTACG
GTCCTTCCTGGATCTGCCCTCCAGAGACTTCCATCCCTTTTTCGCCCATG
TCTGCTGTCAAAGAAAGCTTGAAACGAGATGAGTTGAACTTGTACAACCA
GGGGGTGAATGAACGGAGGGCAGCATTGATGGTGCGCAGAAAGCTGCTGC
TGCAGCAGCAGCAGCAGCAAGAACAACAGCAGGCGGAGATTGCGCAGCAG
CATCTGAAAAAGGAGGAGAAGGAGGATGCATAAATGAGCAAGGCGAGTGA
TTCTGTCTACGCGGGCAACTGGTACTGGGAATGCGAAATCCTCGAGACAC
TTCCCACCACAACTCCTACTGCGGACAGTCACAATGAGGATTACATAGGA
GCAGCAGTAGAAGACCAACCACATTTTCGAGTTGGATGGGCAACGAAGCA
AGGCAACATCCAAGCTCCGGTCGGATACGACAAACACAGCTTCGGCTACC
GCGACGTAAGGGGCTCCAAAATCCACAAAAGCGAGCGTGTGGACCACTAT
GGTGAGGCGTATGGCCCTGGAGACATAATAGGATGCATGATTTGCTTGCC
CGTCCTACCAGAACACATGCAGGAGACATCTTTAAATGGGAGCAGCAATC
CTCTACTGCAGGGGGGGGTCTTCCCCCACCCCTTTCTCAACCGCGAAGAC
AGCTACAACAGTGCTTCAGGCAGTGTGGCTACCTCAGCTAGCGGTGGTGT
TGGTTGCGTTGGTGGTGCTGTGGGTGGCGGTGGAAGCAGCTACAGCAATG
GTAGCAATGGTAATGGCACCACCACCACCCTGGACACCACCACAACCAAG
GACACCGCCAACAACAATTACAACAACAACAATGACAACAATAACAACAG
TAATGACAATAGAAATAACAATTCCAGCAGCAGCAATGGTGGGAATGCTG
CGGGCGAAATAGAGGGTGGTATTGAGGATGAGATACTCAGGAAGGAGTTG
GAGGCCTTGGGGAACCATGTAAGGTTTTTTAAGAATGGAAAGGACCAGGG
TCCGGCGTACACGCAGATTGTGGGAGCGCGCTACTACCCTGCTGCCTCCA
TTTTCCTCACAGGAAGGGTGCGTGGTAACTACGGTCCTTCCTGGATCTGC
CCTCCAGAGACTTCCATCCCTTTTTCGCCCATGTCTGCTGTCAAAGAAAG
CTTGAAACGAGATGAGTTGAACTTGTACAACCAGGGGGTGAATGAACGGA
GGGCAGCATTGATGGTGCGCAGAAAGCTGCTGCTGCAGCAGCAGCAGCAG
CAAGAACAACAGCAGGCGGAGATTGCGCAGCAGCATCTGAAAAAGGAGGA
GAAGGAGGATGCATAA

Synonyms

Publications