jgi.p|Nanoce1779_2|166649, mRNA_7692 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|166649
Unique NamemRNA_7692
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1943
Alignment locationscaffold_21:101053..102995 -

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Properties
Property NameValue
TranscriptId166735
TrackFilteredModels2
ProteinId166649
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:101053..102995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|166649gene_7692Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|166649mRNA_7692-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7692CDS_7692Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7692 ID=mRNA_7692|Name=jgi.p|Nanoce1779_2|166649|organism=Nannochloropsis oceanica|type=mRNA|length=1943bp
CTTGTGCCTTGCTTGGGTCAGTGCATGTGCGTGGTGCGTGGGCGTGGAGT
GTGTTGGGGCTAGGATTTCTGGTGTGGTAAGGCATAGAATGAGGTGGCGG
TCGTGCAACACGCTTGAATCATCGGCGAGGCAGCAACGTTTTTGGGGCTG
GGCAGTCAGTCTGACGAAAGTGGAGGGCACGCCTGCAGTCTTTCACAACA
CTAAATAAGCTCTGCACCACCACACGTGGGCAAACAGGAGCTACGTCCAG
GCCAAGGTCAGCAGAAGCAGAGCGAGCAGCACAAAGAAGAGAAGCAGGAG
GTCGTCGTATCATCGAACAAGTCGAGCAAAATAGGAAAAAGGGAAGGCAG
ATCACAACATGGCCCCCGCATCGGCAGCAGCAACAGCAGCGGCAGCTATA
GGCATCCGCCGCATTGGCTTTGGCTGCGCCCGCATCACGCCCAGCCCGCC
TCACCTCCAAGCCCTTGCCGCTGCCCTCAAGCACGGCATTCGGCTCTTTG
ATACAGCACCTAACTATGGACATATCGGAGCTTCGGAGCGGGCGGTAGGA
CAAGCATTGGCCAAACACTTTCAAGAGACAGGCGCCGAATGCCGGGACGA
AGTAACTGTCTGCACGAAATTTGGGTATTTCCAGCCGGCTGAAGGGCACG
CGCGGGGGCCAGAGCGCGTGTCGGTGGGGAGCAAGGACGAGGGTGGGTTG
CAGTTTTCATTGCACCCAGAGGTGATGGAGCACGAATTGAAGGGCTCCTT
GGAGCGCCTCCAGCTCGAAGCCGTGGATTTGCTGTATGTTCATAACCCCG
AGCACTTTCTGGCGGACATTCTGCTACGGCATGAGACGGGGGAAAGGAGC
TTCGCGGACGACAAGGGTTTAGCAGCAGCCATGCAAGAAGAGCGTCACAA
GCTTAAAGATCGCCTTGTTCGAGCGTTCGAAGCCCTTGAAGGTGCTGTGG
CAAGAGGGAAAATCCGGAAAGGCTACGGGGTGAGCAGTAATGGTTTTGGG
CTTAGCTCTAAGGAAGGGCTGCACCTCTCCTTGTCCATGGTTCTTGATGC
AGCGGCCGAGGGAGCCAAACGTGCGGGGAAAAATGCCCCCTCCCTGCGTG
CGATTCAATTGCCCTTGAATCTCCTTGAGCCGGGCGGGTTGGTGGTAGCG
GCGCAGGCACGAGCGAAGGGGATTGAAGTGTACGCGAATCGGCCACTGAC
GGCTGTGTCACAGGGAGGGTTATATCGGCTAGTGAACAAGGCAGCAGCGG
GTGGGGAGCCACCGGAGGGATACATGGAAGCGTGTCGCACGGCTTTGGAG
CTATTTAATCCCTCTTTTTTATTTGAGGGGAAGGCCGAGGAGGCATTGAC
GGAGGAGGAGAAGGAGACGAGGGAAGGGTGTCGCATTATACAGGAGTTGA
TCCGAGACATGAATAGGCAATTGACTTCATTCACATCGACCGAGTCTTAC
ACCCAAGAGTTGGAAAGGAGGATCATACCTTTGATTGCCTCGACGTTCGA
GAGTTTGGATGAGAGCGCAGCTGATGCTTTGCAGGTTTTTTTTGTGAAGT
ATGGAGAGATGGTTAGGTACCACGCAGCGGTTCGGGCCGTGGAGGCTTGT
AAAACGGCGGGACACGTATTAGAGGAAGGGAAAGAGAGAGGGAGGGAGGG
AGGCGGGTTGTTGCACGAGTATGCGCTGAGGTGGTTGCTAGAGAAGATAC
CGAGGCAGTTGAGCGGTGTTTTGGTGGGCATGCCGCAGGAGGCGTATGTG
CATGATGTCGTACGGATTGCAGAGGGGTGTGGGAGGGAGGGAGGATCGGA
GAAGGGGAGGAAATGAGAGGGACACGGACAGGCGGAACAAAATAGTAGAA
ATTGATGAGAGAGTGAGTTATGATTTTTGGTCGTTTGTAGTCTAACTTTT
TTTTGGGGGGGAATGTTTGTCGCTGTCGTTATGGAAGGATTGC
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protein sequence of jgi.p|Nanoce1779_2|166649

>mRNA_7692-protein ID=mRNA_7692-protein|Name=jgi.p|Nanoce1779_2|166649|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MAPASAAATAAAAIGIRRIGFGCARITPSPPHLQALAAALKHGIRLFDTA
PNYGHIGASERAVGQALAKHFQETGAECRDEVTVCTKFGYFQPAEGHARG
PERVSVGSKDEGGLQFSLHPEVMEHELKGSLERLQLEAVDLLYVHNPEHF
LADILLRHETGERSFADDKGLAAAMQEERHKLKDRLVRAFEALEGAVARG
KIRKGYGVSSNGFGLSSKEGLHLSLSMVLDAAAEGAKRAGKNAPSLRAIQ
LPLNLLEPGGLVVAAQARAKGIEVYANRPLTAVSQGGLYRLVNKAAAGGE
PPEGYMEACRTALELFNPSFLFEGKAEEALTEEEKETREGCRIIQELIRD
MNRQLTSFTSTESYTQELERRIIPLIASTFESLDESAADALQVFFVKYGE
MVRYHAAVRAVEACKTAGHVLEEGKERGREGGGLLHEYALRWLLEKIPRQ
LSGVLVGMPQEAYVHDVVRIAEGCGREGGSEKGRK*
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mRNA from alignment at scaffold_21:101053..102995-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7692 ID=mRNA_7692|Name=jgi.p|Nanoce1779_2|166649|organism=Nannochloropsis oceanica|type=mRNA|length=1943bp|location=Sequence derived from alignment at scaffold_21:101053..102995- (Nannochloropsis oceanica)
CTTGTGCCTTGCTTGGGTCAGTGCATGTGCGTGGTGCGTGGGCGTGGAGT
GTGTTGGGGCTAGGATTTCTGGTGTGGTAAGGCATAGAATGAGGTGGCGG
TCGTGCAACACGCTTGAATCATCGGCGAGGCAGCAACGTTTTTGGGGCTG
GGCAGTCAGTCTGACGAAAGTGGAGGGCACGCCTGCAGTCTTTCACAACA
CTAAATAAGCTCTGCACCACCACACGTGGGCAAACAGGAGCTACGTCCAG
GCCAAGGTCAGCAGAAGCAGAGCGAGCAGCACAAAGAAGAGAAGCAGGAG
GTCGTCGTATCATCGAACAAGTCGAGCAAAATAGGAAAAAGGGAAGGCAG
ATCACAACATGGCCCCCGCATCGGCAGCAGCAACAGCAGCGGCAGCTATA
GGCATCCGCCGCATTGGCTTTGGCTGCGCCCGCATCACGCCCAGCCCGCC
TCACCTCCAAGCCCTTGCCGCTGCCCTCAAGCACGGCATTCGGCTCTTTG
ATACAGCACCTAACTATGGACATATCGGAGCTTCGGAGCGGGCGGTAGGA
CAAGCATTGGCCAAACACTTTCAAGAGACAGGCGCCGAATGCCGGGACGA
AGTAACTGTCTGCACGAAATTTGGGTATTTCCAGCCGGCTGAAGGGCACG
CGCGGGGGCCAGAGCGCGTGTCGGTGGGGAGCAAGGACGAGGGTGGGTTG
CAGTTTTCATTGCACCCAGAGGTGATGGAGCACGAATTGAAGGGCTCCTT
GGAGCGCCTCCAGCTCGAAGCCGTGGATTTGCTGTATGTTCATAACCCCG
AGCACTTTCTGGCGGACATTCTGCTACGGCATGAGACGGGGGAAAGGAGC
TTCGCGGACGACAAGGGTTTAGCAGCAGCCATGCAAGAAGAGCGTCACAA
GCTTAAAGATCGCCTTGTTCGAGCGTTCGAAGCCCTTGAAGGTGCTGTGG
CAAGAGGGAAAATCCGGAAAGGCTACGGGGTGAGCAGTAATGGTTTTGGG
CTTAGCTCTAAGGAAGGGCTGCACCTCTCCTTGTCCATGGTTCTTGATGC
AGCGGCCGAGGGAGCCAAACGTGCGGGGAAAAATGCCCCCTCCCTGCGTG
CGATTCAATTGCCCTTGAATCTCCTTGAGCCGGGCGGGTTGGTGGTAGCG
GCGCAGGCACGAGCGAAGGGGATTGAAGTGTACGCGAATCGGCCACTGAC
GGCTGTGTCACAGGGAGGGTTATATCGGCTAGTGAACAAGGCAGCAGCGG
GTGGGGAGCCACCGGAGGGATACATGGAAGCGTGTCGCACGGCTTTGGAG
CTATTTAATCCCTCTTTTTTATTTGAGGGGAAGGCCGAGGAGGCATTGAC
GGAGGAGGAGAAGGAGACGAGGGAAGGGTGTCGCATTATACAGGAGTTGA
TCCGAGACATGAATAGGCAATTGACTTCATTCACATCGACCGAGTCTTAC
ACCCAAGAGTTGGAAAGGAGGATCATACCTTTGATTGCCTCGACGTTCGA
GAGTTTGGATGAGAGCGCAGCTGATGCTTTGCAGGTTTTTTTTGTGAAGT
ATGGAGAGATGGTTAGGTACCACGCAGCGGTTCGGGCCGTGGAGGCTTGT
AAAACGGCGGGACACGTATTAGAGGAAGGGAAAGAGAGAGGGAGGGAGGG
AGGCGGGTTGTTGCACGAGTATGCGCTGAGGTGGTTGCTAGAGAAGATAC
CGAGGCAGTTGAGCGGTGTTTTGGTGGGCATGCCGCAGGAGGCGTATGTG
CATGATGTCGTACGGATTGCAGAGGGGTGTGGGAGGGAGGGAGGATCGGA
GAAGGGGAGGAAATGAGAGGGACACGGACAGGCGGAACAAAATAGTAGAA
ATTGATGAGAGAGTGAGTTATGATTTTTGGTCGTTTGTAGTCTAACTTTT
TTTTGGGGGGGAATGTTTGTCGCTGTCGTTATGGAAGGATTGC
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Coding sequence (CDS) from alignment at scaffold_21:101053..102995-

>mRNA_7692 ID=mRNA_7692|Name=jgi.p|Nanoce1779_2|166649|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at scaffold_21:101053..102995- (Nannochloropsis oceanica)
ATGGCCCCCGCATCGGCAGCAGCAACAGCAGCGGCAGCTATAGGCATCCG
CCGCATTGGCTTTGGCTGCGCCCGCATCACGCCCAGCCCGCCTCACCTCC
AAGCCCTTGCCGCTGCCCTCAAGCACGGCATTCGGCTCTTTGATACAGCA
CCTAACTATGGACATATCGGAGCTTCGGAGCGGGCGGTAGGACAAGCATT
GGCCAAACACTTTCAAGAGACAGGCGCCGAATGCCGGGACGAAGTAACTG
TCTGCACGAAATTTGGGTATTTCCAGCCGGCTGAAGGGCACGCGCGGGGG
CCAGAGCGCGTGTCGGTGGGGAGCAAGGACGAGGGTGGGTTGCAGTTTTC
ATTGCACCCAGAGGTGATGGAGCACGAATTGAAGGGCTCCTTGGAGCGCC
TCCAGCTCGAAGCCGTGGATTTGCTGTATGTTCATAACCCCGAGCACTTT
CTGGCGGACATTCTGCTACGGCATGAGACGGGGGAAAGGAGCTTCGCGGA
CGACAAGGGTTTAGCAGCAGCCATGCAAGAAGAGCGTCACAAGCTTAAAG
ATCGCCTTGTTCGAGCGTTCGAAGCCCTTGAAGGTGCTGTGGCAAGAGGG
AAAATCCGGAAAGGCTACGGGGTGAGCAGTAATGGTTTTGGGCTTAGCTC
TAAGGAAGGGCTGCACCTCTCCTTGTCCATGGTTCTTGATGCAGCGGCCG
AGGGAGCCAAACGTGCGGGGAAAAATGCCCCCTCCCTGCGTGCGATTCAA
TTGCCCTTGAATCTCCTTGAGCCGGGCGGGTTGGTGGTAGCGGCGCAGGC
ACGAGCGAAGGGGATTGAAGTGTACGCGAATCGGCCACTGACGGCTGTGT
CACAGGGAGGGTTATATCGGCTAGTGAACAAGGCAGCAGCGGGTGGGGAG
CCACCGGAGGGATACATGGAAGCGTGTCGCACGGCTTTGGAGCTATTTAA
TCCCTCTTTTTTATTTGAGGGGAAGGCCGAGGAGGCATTGACGGAGGAGG
AGAAGGAGACGAGGGAAGGGTGTCGCATTATACAGGAGTTGATCCGAGAC
ATGAATAGGCAATTGACTTCATTCACATCGACCGAGTCTTACACCCAAGA
GTTGGAAAGGAGGATCATACCTTTGATTGCCTCGACGTTCGAGAGTTTGG
ATGAGAGCGCAGCTGATGCTTTGCAGGTTTTTTTTGTGAAGTATGGAGAG
ATGGTTAGGTACCACGCAGCGGTTCGGGCCGTGGAGGCTTGTAAAACGGC
GGGACACGTATTAGAGGAAGGGAAAGAGAGAGGGAGGGAGGGAGGCGGGT
TGTTGCACGAGTATGCGCTGAGGTGGTTGCTAGAGAAGATACCGAGGCAG
TTGAGCGGTGTTTTGGTGGGCATGCCGCAGGAGGCGTATGTGCATGATGT
CGTACGGATTGCAGAGGGGTGTGGGAGGGAGGGAGGATCGGAGAAGGGGA
GGAAATGA
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Synonyms
Publications