jgi.p|Nanoce1779_2|599686, mRNA_7691 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599686
Unique Name	mRNA_7691
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	969
Alignment location	scaffold_21:100120..101088 -

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Properties


Property Name	Value
TranscriptId	599772
Track	FilteredModels2
ProteinId	599686

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:100120..101088 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599686	gene_7691	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599686	mRNA_7691-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7691	CDS_7691	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:100120..101088-
coding sequence from alignment at scaffold_21:100120..101088-

mRNA sequence

>mRNA_7691 ID=mRNA_7691|Name=jgi.p|Nanoce1779_2|599686|organism=Nannochloropsis oceanica|type=mRNA|length=969bp
GGGGAATGTTTGTCGCTGTCGTTATGGAAGGATTGCCATTGCCTTCTTGC
TATCGCTGCTGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCGCGGTTG
CTACTATTACTGCCACGGCACACTTGTCAGTCGCCATTGTGATGAAGTTT
CGCGCGTGTTGCTTCAAGTATTTGATAGGAGATGGGATAGATCTGCCCAT
TGCCCGTACTGGGGGTTAGCCATCACTTTCCTTTCCTTGTTTCTGTCATT
TCTTTCGTTTCCCTGTCTCTGCATCTCATATGAAAGCCTTTCTTCCTTTC
CTTGCATTTCTGTCTCCCTCTTCTTCCTCCTCTCCCATCTTCTGCTCCTG
CCTCTGCTACTCCTGCTCTCGTCCTCTTCCTCCTGCTCCTGCTCCTGCTC
CTGGTCATCGTTATGGAAGGCGTCCAGCCACACATCCCTACCTCGTCCCG
CATCCCTCCCTCCTCGCACATCCGTTGAGCGGCCCGGCCCATTCAGGCGT
TTCCCGTCCAAAGACCATCTGGTCTCTCTTCTTCTCATCGCTCCTCGATC
GTTGTTGATTGCTTTGCTTTTCTTGCTGCAGTTGGGTTAGGCCGACACGC
GTACCTACGTATTATTCACATGAAGAATGAACGGTGAAACACATCACACT
CTCTTTTTCGCCGTCTTCGTCGTCGTCTTCTCACTCTTCTTCTTCTTCTT
CCTTTTCTTATTTTCTCCTTCTCGTTGTCACCTCACCCTCCTCCCCCTTG
CCATTTCTGTAAAGAACAAACCCATCACCCGAGTATCACGGTCAAAAAGA
GCCTCCTCCCTCCTCCGTCCTCCCTTTCCACTTCTTTTTCATCCCACCAC
CACCCTACGCCGCCACACTTTCCTCCTCCTCTGGGCCTCTCTCCTCCTGC
TCCTCCTCCTCCTCCTCCCTCTCCACCTTAATCGCCTCTCGAAACCGCCT
CCCCGGCAAGATAATGATA

protein sequence of jgi.p|Nanoce1779_2|599686

>mRNA_7691-protein ID=mRNA_7691-protein|Name=jgi.p|Nanoce1779_2|599686|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MFVAVVMEGLPLPSCYRCCCRCCCCCCCCRGCYYYCHGTLVSRHCDEVSR
VLLQVFDRRWDRSAHCPYWGLAITFLSLFLSFLSFPCLCISYESLSSFPC
ISVSLFFLLSHLLLLPLLLLLSSSSSCSCSCSWSSLWKASSHTSLPRPAS
LPPRTSVERPGPFRRFPSKDHLVSLLLIAPRSLLIALLFLLQLG*

mRNA from alignment at scaffold_21:100120..101088-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7691 ID=mRNA_7691|Name=jgi.p|Nanoce1779_2|599686|organism=Nannochloropsis oceanica|type=mRNA|length=969bp|location=Sequence derived from alignment at scaffold_21:100120..101088- (Nannochloropsis oceanica)
GGGGAATGTTTGTCGCTGTCGTTATGGAAGGATTGCCATTGCCTTCTTGC
TATCGCTGCTGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCGCGGTTG
CTACTATTACTGCCACGGCACACTTGTCAGTCGCCATTGTGATGAAGTTT
CGCGCGTGTTGCTTCAAGTATTTGATAGGAGATGGGATAGATCTGCCCAT
TGCCCGTACTGGGGGTTAGCCATCACTTTCCTTTCCTTGTTTCTGTCATT
TCTTTCGTTTCCCTGTCTCTGCATCTCATATGAAAGCCTTTCTTCCTTTC
CTTGCATTTCTGTCTCCCTCTTCTTCCTCCTCTCCCATCTTCTGCTCCTG
CCTCTGCTACTCCTGCTCTCGTCCTCTTCCTCCTGCTCCTGCTCCTGCTC
CTGGTCATCGTTATGGAAGGCGTCCAGCCACACATCCCTACCTCGTCCCG
CATCCCTCCCTCCTCGCACATCCGTTGAGCGGCCCGGCCCATTCAGGCGT
TTCCCGTCCAAAGACCATCTGGTCTCTCTTCTTCTCATCGCTCCTCGATC
GTTGTTGATTGCTTTGCTTTTCTTGCTGCAGTTGGGTTAGGCCGACACGC
GTACCTACGTATTATTCACATGAAGAATGAACGGTGAAACACATCACACT
CTCTTTTTCGCCGTCTTCGTCGTCGTCTTCTCACTCTTCTTCTTCTTCTT
CCTTTTCTTATTTTCTCCTTCTCGTTGTCACCTCACCCTCCTCCCCCTTG
CCATTTCTGTAAAGAACAAACCCATCACCCGAGTATCACGGTCAAAAAGA
GCCTCCTCCCTCCTCCGTCCTCCCTTTCCACTTCTTTTTCATCCCACCAC
CACCCTACGCCGCCACACTTTCCTCCTCCTCTGGGCCTCTCTCCTCCTGC
TCCTCCTCCTCCTCCTCCCTCTCCACCTTAATCGCCTCTCGAAACCGCCT
CCCCGGCAAGATAATGATA

Coding sequence (CDS) from alignment at scaffold_21:100120..101088-

>mRNA_7691 ID=mRNA_7691|Name=jgi.p|Nanoce1779_2|599686|organism=Nannochloropsis oceanica|type=CDS|length=585bp|location=Sequence derived from alignment at scaffold_21:100120..101088- (Nannochloropsis oceanica)
ATGTTTGTCGCTGTCGTTATGGAAGGATTGCCATTGCCTTCTTGCTATCG
CTGCTGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCGCGGTTGCTACT
ATTACTGCCACGGCACACTTGTCAGTCGCCATTGTGATGAAGTTTCGCGC
GTGTTGCTTCAAGTATTTGATAGGAGATGGGATAGATCTGCCCATTGCCC
GTACTGGGGGTTAGCCATCACTTTCCTTTCCTTGTTTCTGTCATTTCTTT
CGTTTCCCTGTCTCTGCATCTCATATGAAAGCCTTTCTTCCTTTCCTTGC
ATTTCTGTCTCCCTCTTCTTCCTCCTCTCCCATCTTCTGCTCCTGCCTCT
GCTACTCCTGCTCTCGTCCTCTTCCTCCTGCTCCTGCTCCTGCTCCTGGT
CATCGTTATGGAAGGCGTCCAGCCACACATCCCTACCTCGTCCCGCATCC
CTCCCTCCTCGCACATCCGTTGAGCGGCCCGGCCCATTCAGGCGTTTCCC
GTCCAAAGACCATCTGGTCTCTCTTCTTCTCATCGCTCCTCGATCGTTGT
TGATTGCTTTGCTTTTCTTGCTGCAGTTGGGTTAG

Synonyms

Publications