jgi.p|Nanoce1779_2|574073, mRNA_769 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574073
Unique NamemRNA_769
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length899
Alignment locationscaffold_2:393606..394504 -

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Properties
Property NameValue
TranscriptId574159
TrackFilteredModels2
ProteinId574073
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:393606..394504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574073gene_769Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574073mRNA_769-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_769CDS_769Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_769 ID=mRNA_769|Name=jgi.p|Nanoce1779_2|574073|organism=Nannochloropsis oceanica|type=mRNA|length=899bp
CAGATAGGAAAGCAAGGACTAGACGACAAGACCTACTCGCCAACAAGCGA
GCCGACATCTAACAACACTGCTTCGCCTCTATACTCCACGACCTTCTCAA
CACCGCCAAATATCTTATGCCACAAGACCGCTTAACTGCCGGTCTGGCCG
GCGCATTAGTGGTGGCCGGGACCTGGCTTCTCACCGAGAAAGGAGTTCCC
CAACTTCTCTTTCATCACGTGACAAACTTGCTCCGGGGGAAGAAGAAAAG
GCATCGAAACGTTAGGGATGGATATAGAGGCGCCACTGAGGATTTGTCTT
TGTTCTATGGCATGGACCAAGCGGCAATGACGACTGTGACACCTGAAGCA
AGGCTACTTCCACAGGAGCTCTATGAACAGGTAGTGCGACTGTTACCTAT
TTTGTGTGTAGATTTGGCCATAGAGCGACCGTCGGACGGCAAGTTTTTGC
TGGTCAAACGCGGCTCAGAGCCAGCAAAAGGATTTTATTGGCCGCCGGGG
GGAAGGATTTTTAGAGGGGAGACTTTTTTTGCAGCGGCAGTGAGGAAGGC
AAGGGAGGAGACGGGAGTGGAGGCTTTCCCCCTCGGTGTGCTTGGTGTGT
ACAACACATTTTTTCCGACGTCAAACTGGGGCTCAGGTATGGGGACACAC
ACAGTCAATATATGTGTGCATATGCGGTTGGTGGGAGGGGGGAAGGAAGG
GGAGGGGGAGGTGCAGTTGGATGAAACGAGCGAGGAGCATGTGTGGGTGC
ACCCGAGGGAGAAGTGTCATCACGATCCATATGTCCAGGAGATTTTGATG
GCGGTGGCAAGCGGAGTGTGTTTGTAGCAGGTGTGGAAATCATCCAACAA
CTGTTACAAACGGAAAGAACGAAAAGGAAAGCAAGCGGTCACATGTAAC
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protein sequence of jgi.p|Nanoce1779_2|574073

>mRNA_769-protein ID=mRNA_769-protein|Name=jgi.p|Nanoce1779_2|574073|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MPQDRLTAGLAGALVVAGTWLLTEKGVPQLLFHHVTNLLRGKKKRHRNVR
DGYRGATEDLSLFYGMDQAAMTTVTPEARLLPQELYEQVVRLLPILCVDL
AIERPSDGKFLLVKRGSEPAKGFYWPPGGRIFRGETFFAAAVRKAREETG
VEAFPLGVLGVYNTFFPTSNWGSGMGTHTVNICVHMRLVGGGKEGEGEVQ
LDETSEEHVWVHPREKCHHDPYVQEILMAVASGVCL*
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mRNA from alignment at scaffold_2:393606..394504-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_769 ID=mRNA_769|Name=jgi.p|Nanoce1779_2|574073|organism=Nannochloropsis oceanica|type=mRNA|length=899bp|location=Sequence derived from alignment at scaffold_2:393606..394504- (Nannochloropsis oceanica)
CAGATAGGAAAGCAAGGACTAGACGACAAGACCTACTCGCCAACAAGCGA
GCCGACATCTAACAACACTGCTTCGCCTCTATACTCCACGACCTTCTCAA
CACCGCCAAATATCTTATGCCACAAGACCGCTTAACTGCCGGTCTGGCCG
GCGCATTAGTGGTGGCCGGGACCTGGCTTCTCACCGAGAAAGGAGTTCCC
CAACTTCTCTTTCATCACGTGACAAACTTGCTCCGGGGGAAGAAGAAAAG
GCATCGAAACGTTAGGGATGGATATAGAGGCGCCACTGAGGATTTGTCTT
TGTTCTATGGCATGGACCAAGCGGCAATGACGACTGTGACACCTGAAGCA
AGGCTACTTCCACAGGAGCTCTATGAACAGGTAGTGCGACTGTTACCTAT
TTTGTGTGTAGATTTGGCCATAGAGCGACCGTCGGACGGCAAGTTTTTGC
TGGTCAAACGCGGCTCAGAGCCAGCAAAAGGATTTTATTGGCCGCCGGGG
GGAAGGATTTTTAGAGGGGAGACTTTTTTTGCAGCGGCAGTGAGGAAGGC
AAGGGAGGAGACGGGAGTGGAGGCTTTCCCCCTCGGTGTGCTTGGTGTGT
ACAACACATTTTTTCCGACGTCAAACTGGGGCTCAGGTATGGGGACACAC
ACAGTCAATATATGTGTGCATATGCGGTTGGTGGGAGGGGGGAAGGAAGG
GGAGGGGGAGGTGCAGTTGGATGAAACGAGCGAGGAGCATGTGTGGGTGC
ACCCGAGGGAGAAGTGTCATCACGATCCATATGTCCAGGAGATTTTGATG
GCGGTGGCAAGCGGAGTGTGTTTGTAGCAGGTGTGGAAATCATCCAACAA
CTGTTACAAACGGAAAGAACGAAAAGGAAAGCAAGCGGTCACATGTAAC
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Coding sequence (CDS) from alignment at scaffold_2:393606..394504-

>mRNA_769 ID=mRNA_769|Name=jgi.p|Nanoce1779_2|574073|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_2:393606..394504- (Nannochloropsis oceanica)
ATGCCACAAGACCGCTTAACTGCCGGTCTGGCCGGCGCATTAGTGGTGGC
CGGGACCTGGCTTCTCACCGAGAAAGGAGTTCCCCAACTTCTCTTTCATC
ACGTGACAAACTTGCTCCGGGGGAAGAAGAAAAGGCATCGAAACGTTAGG
GATGGATATAGAGGCGCCACTGAGGATTTGTCTTTGTTCTATGGCATGGA
CCAAGCGGCAATGACGACTGTGACACCTGAAGCAAGGCTACTTCCACAGG
AGCTCTATGAACAGGTAGTGCGACTGTTACCTATTTTGTGTGTAGATTTG
GCCATAGAGCGACCGTCGGACGGCAAGTTTTTGCTGGTCAAACGCGGCTC
AGAGCCAGCAAAAGGATTTTATTGGCCGCCGGGGGGAAGGATTTTTAGAG
GGGAGACTTTTTTTGCAGCGGCAGTGAGGAAGGCAAGGGAGGAGACGGGA
GTGGAGGCTTTCCCCCTCGGTGTGCTTGGTGTGTACAACACATTTTTTCC
GACGTCAAACTGGGGCTCAGGTATGGGGACACACACAGTCAATATATGTG
TGCATATGCGGTTGGTGGGAGGGGGGAAGGAAGGGGAGGGGGAGGTGCAG
TTGGATGAAACGAGCGAGGAGCATGTGTGGGTGCACCCGAGGGAGAAGTG
TCATCACGATCCATATGTCCAGGAGATTTTGATGGCGGTGGCAAGCGGAG
TGTGTTTGTAG
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Synonyms
Publications