jgi.p|Nanoce1779_2|599677, mRNA_7689 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599677
Unique NamemRNA_7689
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1243
Alignment locationscaffold_21:94121..95363 -

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Properties
Property NameValue
TranscriptId599763
TrackFilteredModels2
ProteinId599677
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:94121..95363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599677gene_7689Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599677mRNA_7689-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7689CDS_7689Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7689 ID=mRNA_7689|Name=jgi.p|Nanoce1779_2|599677|organism=Nannochloropsis oceanica|type=mRNA|length=1243bp
GTTCGGTTTGCGTTGCAATGGGGTGCTTCGTTCTTCCTTTCTCTCTCTCG
TTGTGATGGGTTTCCCCGCTTCCTTATCCTCGTCTTCTTCTTGCTTTTAT
TTTTTAATCACTTCATTCCTCGTCACCTCACATGTATGCTTTTACCGTTG
GTATTGGCGTGTGCTTATGCTGCACCCATCATTCTTCCTCTCGCCTGGTG
CTGGTTGTAATTCACTTCATATTGCCGCTGCTGTCGTTGCTTAGTACCTT
CCCTCATACAGATTGTACACCCACAAATGGACTTAGAAGACACGCACTTA
GAGACAAAGGAAACATTACGAAAACCACACTGCTGACACTACAGCTATAT
TTGTCCTCATTTCCCCGTAACACCTTTAAGCCCTACTATCCTCTGCTGGC
AACCCACCGTGACGCAAACGATGCTGCTTTGCGGTGCGTGTATATTTTTC
GATTCCCTGTCATCCTTTCCATAATCCCTTTGTCTCTCCCCGCCTTGTCC
CTCGGAGCTCCCTCCCTATTGCACAACCTCTCCCTTCTCTATTATCTCAC
AATCTCTCAAAAGCACACCCGGCCCCTCTTACACATTCCACAACAGATCT
ATGGCCGTGGTCCTGGTCGGACGCATCGTCGACATCCGTCACGAATCCTG
GCAGTCCATGCCGGCCGCCCTCAAGGCCGCCGTCAGGCAAGGCCTCTGGC
ACAACTTAATGCACGAAACCGACCCGGAGCTCGTTCGCAAGCTTTCACAT
GCCGTAGCCCGCGCATCGGAGGGGTGGAAGGATTTGGTCGCGGCATCCAT
TGGTCTGTTGGGGAGCACCAACGACCAGGCCCGGCAAGTGGGAGTATTTT
TCCTCCTGGAGCAGATGTCCGAATACAGCGACGAGCTTAAGAGCGACCCT
GGTCGGCTTCTGCCTGTCTTTCAAGCGGCACTTGTGGATGATATGACCCT
GTCAGTGCGATGCGGGGCGCTCAAGGCATTGTTATCGTTGTTGAATCACA
TAGAGACCAGGGCGGCTGTCATTAATGGGGGGGTGAGCAGCACCAAGGGT
GGGAAAGGCTCGGCGGTTGAGGGCCTTTCACCTCATGGGCATGTGAGCCA
GGCAATCAGCCACGGCCCTCGCCCCTGTGTCGCCAATGCCATTAAATCCT
CCTTCCTTCCTTCCTTTCTTCCTTTCCTTTCTCCTTTCCTTTCCTTTCCC
TCTCCTTCCTCCTCCTCTCTCCTCTCTCTCTCTCTCTCTCTCT
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protein sequence of jgi.p|Nanoce1779_2|599677

>mRNA_7689-protein ID=mRNA_7689-protein|Name=jgi.p|Nanoce1779_2|599677|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MYAFTVGIGVCLCCTHHSSSRLVLVVIHFILPLLSLLSTFPHTDCTPTNG
LRRHALRDKGNITKTTLLTLQLYLSSFPRNTFKPYYPLLATHRDANDAAL
RCVYIFRFPVILSIIPLSLPALSLGAPSLLHNLSLLYYLTISQKHTRPLL
HIPQQIYGRGPGRTHRRHPSRILAVHAGRPQGRRQARPLAQLNARNRPGA
RSQAFTCRSPRIGGVEGFGRGIHWSVGEHQRPGPASGSIFPPGADVRIQR
RA*
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mRNA from alignment at scaffold_21:94121..95363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7689 ID=mRNA_7689|Name=jgi.p|Nanoce1779_2|599677|organism=Nannochloropsis oceanica|type=mRNA|length=1243bp|location=Sequence derived from alignment at scaffold_21:94121..95363- (Nannochloropsis oceanica)
GTTCGGTTTGCGTTGCAATGGGGTGCTTCGTTCTTCCTTTCTCTCTCTCG
TTGTGATGGGTTTCCCCGCTTCCTTATCCTCGTCTTCTTCTTGCTTTTAT
TTTTTAATCACTTCATTCCTCGTCACCTCACATGTATGCTTTTACCGTTG
GTATTGGCGTGTGCTTATGCTGCACCCATCATTCTTCCTCTCGCCTGGTG
CTGGTTGTAATTCACTTCATATTGCCGCTGCTGTCGTTGCTTAGTACCTT
CCCTCATACAGATTGTACACCCACAAATGGACTTAGAAGACACGCACTTA
GAGACAAAGGAAACATTACGAAAACCACACTGCTGACACTACAGCTATAT
TTGTCCTCATTTCCCCGTAACACCTTTAAGCCCTACTATCCTCTGCTGGC
AACCCACCGTGACGCAAACGATGCTGCTTTGCGGTGCGTGTATATTTTTC
GATTCCCTGTCATCCTTTCCATAATCCCTTTGTCTCTCCCCGCCTTGTCC
CTCGGAGCTCCCTCCCTATTGCACAACCTCTCCCTTCTCTATTATCTCAC
AATCTCTCAAAAGCACACCCGGCCCCTCTTACACATTCCACAACAGATCT
ATGGCCGTGGTCCTGGTCGGACGCATCGTCGACATCCGTCACGAATCCTG
GCAGTCCATGCCGGCCGCCCTCAAGGCCGCCGTCAGGCAAGGCCTCTGGC
ACAACTTAATGCACGAAACCGACCCGGAGCTCGTTCGCAAGCTTTCACAT
GCCGTAGCCCGCGCATCGGAGGGGTGGAAGGATTTGGTCGCGGCATCCAT
TGGTCTGTTGGGGAGCACCAACGACCAGGCCCGGCAAGTGGGAGTATTTT
TCCTCCTGGAGCAGATGTCCGAATACAGCGACGAGCTTAAGAGCGACCCT
GGTCGGCTTCTGCCTGTCTTTCAAGCGGCACTTGTGGATGATATGACCCT
GTCAGTGCGATGCGGGGCGCTCAAGGCATTGTTATCGTTGTTGAATCACA
TAGAGACCAGGGCGGCTGTCATTAATGGGGGGGTGAGCAGCACCAAGGGT
GGGAAAGGCTCGGCGGTTGAGGGCCTTTCACCTCATGGGCATGTGAGCCA
GGCAATCAGCCACGGCCCTCGCCCCTGTGTCGCCAATGCCATTAAATCCT
CCTTCCTTCCTTCCTTTCTTCCTTTCCTTTCTCCTTTCCTTTCCTTTCCC
TCTCCTTCCTCCTCCTCTCTCCTCTCTCTCTCTCTCTCTCTCT
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Coding sequence (CDS) from alignment at scaffold_21:94121..95363-

>mRNA_7689 ID=mRNA_7689|Name=jgi.p|Nanoce1779_2|599677|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_21:94121..95363- (Nannochloropsis oceanica)
ATGTATGCTTTTACCGTTGGTATTGGCGTGTGCTTATGCTGCACCCATCA
TTCTTCCTCTCGCCTGGTGCTGGTTGTAATTCACTTCATATTGCCGCTGC
TGTCGTTGCTTAGTACCTTCCCTCATACAGATTGTACACCCACAAATGGA
CTTAGAAGACACGCACTTAGAGACAAAGGAAACATTACGAAAACCACACT
GCTGACACTACAGCTATATTTGTCCTCATTTCCCCGTAACACCTTTAAGC
CCTACTATCCTCTGCTGGCAACCCACCGTGACGCAAACGATGCTGCTTTG
CGGTGCGTGTATATTTTTCGATTCCCTGTCATCCTTTCCATAATCCCTTT
GTCTCTCCCCGCCTTGTCCCTCGGAGCTCCCTCCCTATTGCACAACCTCT
CCCTTCTCTATTATCTCACAATCTCTCAAAAGCACACCCGGCCCCTCTTA
CACATTCCACAACAGATCTATGGCCGTGGTCCTGGTCGGACGCATCGTCG
ACATCCGTCACGAATCCTGGCAGTCCATGCCGGCCGCCCTCAAGGCCGCC
GTCAGGCAAGGCCTCTGGCACAACTTAATGCACGAAACCGACCCGGAGCT
CGTTCGCAAGCTTTCACATGCCGTAGCCCGCGCATCGGAGGGGTGGAAGG
ATTTGGTCGCGGCATCCATTGGTCTGTTGGGGAGCACCAACGACCAGGCC
CGGCAAGTGGGAGTATTTTTCCTCCTGGAGCAGATGTCCGAATACAGCGA
CGAGCTTAA
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Synonyms
Publications