jgi.p|Nanoce1779_2|672931, mRNA_7687 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|672931
Unique Name	mRNA_7687
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3468
Alignment location	scaffold_21:80243..83779 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	673017
Track	FilteredModels2
ProteinId	672931

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:80243..83779 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672931	gene_7687	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672931	mRNA_7687-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7687	CDS_7687	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:80243..83779-
coding sequence from alignment at scaffold_21:80243..83779-

mRNA sequence

>mRNA_7687 ID=mRNA_7687|Name=jgi.p|Nanoce1779_2|672931|organism=Nannochloropsis oceanica|type=mRNA|length=3468bp
GTTCGCTCTGGTCCCTGGTCTCCGTGCCGCTAAAAAAAAAGGATCAGTAG
AGCGTATCCCTGTATAAAAGGTTGTGTCTTGCATGTGTCCTCGGTCAGAG
AGGGACATGAAGTGGAGGCAAGAGCAACTTGACGTCGTTGCAACTAGGAT
GATGCCGAGAATGATGGCTGAGGAACTCACACACTGCCTTCCCTACGCCC
CTATTTTTTCATTTTACACATCCATTAGCGCAGGTTTTCCAGAGGCTCTC
GTGCAGAGAGACCGCTATTTGCCGCATCCGGAGTCTATTCTCTCAAGCAG
CATCACCATTCCTTTCTCCCCGCTACGCCCTAGACTAGACGCCACTCCAT
ATAACGTGAAAGGAAGCGTACCAAGGCCTGTCGCCGCTATCGTCCAAGCG
TCACCCCCATAAACGTTACCCGCTTTTTCTTCTCACAAACCAACATGCCC
CCCCCCATCCTCGTCACCTACGAAATCATTGGGCCCGCCGATGCGGCCGA
AACCGGGTTGACATCCTCCTTTGAACTCCTGGGCTATAACACAAGCAGCA
ACTTCTCAAGAGAAGTCCCGACCGTCCAAGCCCTGCGCGAAGCCTTCCCC
TACCTGGGCAAATTCCATTTTCGAGCGAAAATTCCCCTTCCCTTATCCAC
ACCGTCACAATATGCGTGGTTAGACCTAGCCGACGACGACGCTCCCTTGC
CTGTATGGGTGGAGAGGAATGCACAGCAATGCGTGGAAATACGGGCACTG
CCATTGGTCTTGCCAGAGGCGCCAGGAGAGGACGAGGAGGAAGATGGGGG
GGAGCTAGACTTTAGTGAACCTGATCTGGATCAAGATATTGTAGAGGCGT
CAACGTGTGGAGGTGGAGAAGGGGGATGGGAGAAAGGATATGGGTATGAA
GCACGAGCCCGCTCTCGTCAGATGGAAGAACAAGGACGGCAATCCTCCTC
CTTATCGTCATCCTCCCACCCCTCCAGCAGCTGGTCTAGACAGCTCAAAG
ACGCGGGTGAGTCTGTCCTGACCTCAGACGTCGCCCGGGACCTGACCAAA
AAGGGCCTGAAAGTAGGGAAGCAAGTCGGGAAACAAGTGAATAAACTGTG
GAGGCTCGTAGGGGAAGGACTCGCTGGAGGAGGAGGGGGAGGGGGAGGAG
AAGGACGAGAAGAAGGAGAATACCCCTCCTCCCCCCATGGGCCAAGTGCG
GGTGCGGTTCGGTACTTGAGGAAATGGGAGGAGGCACTGGTGACCCCGCC
AGACGCAGAATTGCTTTCGACGCTTGGGGCGGCCTTGTTTCCTCCCGGGG
AAGGGGGGAGGGAGGGAGGACCGGGAGGTAAGATAAATTGGAGAAGGGCG
GGTTGTGAGGGAGAGGAGCCCATCAGGGATTTACGTGGGACGGGGAGTAT
GTGCGCGAAGTGTTTGATTTATACCGCGAGGACCTACCCGAGAAAAATCC
AGCAAATTTTGAGTAGGGGGGAGGAAGACGAGGAAGAAGGGAGGGAGGGA
GGGCACGCGTACCCTCTGGTGGGGGTTGCGAATAGTCTGACGTTGATGTT
GGCAGATATTTTTAAGTTGAGGGATGGGAGATATGTGCATGTGCAAAACG
TGTTCTGGCCTTTGTTTGAAGGGGGGGGATACGGAACGATAGAGGAGGTG
TTCAGTGCGGCCCTTGGGTACCTGGACCGGAGGTGGGTGGAGACGGAAGC
GGGGATAGAGGGGTTTCCACGGCTGGTGCAGCATGTGAGGAGGGGGTTGG
AGGGAGTTCTAGGGCAGGCTCCAGTGAGCTTACCTCACTTTCAAGCCATG
GCGGAGGAAGCAGGACTGTACATGGAGTGATGGAGAAGGATATCAGGGGG
GGCCGGAAGGAGGAAGAGAGAAGGGAGCACACCGAGAAGTATCGGAAAAC
AATGTATATGCTGAGATCGTCGAGCAGATAACGACGGGATGTGTCTCGTC
CTTTTTCTGTTCAGGTACTTCATCTTTCGGTTTTTGCCACTGTATTCCCT
TCTCATGGCAACTACCCTCTGAACGAGACTCCGGCAGCTCGTCTGTGCCT
CTGCCTGCACTCCTTCCATCCGTTCCTCCCTCCTCTTCTAGGCGGTGCCC
CAGGACAAGAGCAGCACGTTGGCCCACAAAATAAGAAAGAATTTGGTGGT
CTCTGTGCTCGTGCTTGTCGTCGTCTTTTTTGCGCCGCCGCTACCGCTGC
CGCTGCTGCTGCTGATACGTGGTAACGATTGAATTGAACATTGAACATGA
CGTGCGCAGGTATGTGTGAATGTATATCCTATCTCTCACTCTCACAAAAT
TCCAATCAACAACAAGGATCCAGGAAGGAACCTCCTCTTAATCTAGACAC
TAAATCACTCTTTGTCCCCCAACCGTCGTTTTCGTGTTTGAGTTTCTCCG
TCTCTTTTCTCCTTTCTTTCTCTTTCTGGGCATTATCCCTCTCCCTCTAT
TTCTACAAGCTACAATTCCATTCCATCTTCGCAATTCTTCCCTCTCTAAC
CCTAACCCTAACCCTAACACTCTCTCCTCTTTCGATGTTTTTCGTGACAT
CTGGCAGTGACATAACAATTCTATTTCTACTGCTAAAACTGCTACCGCCG
CTGCTGCTGCAACCAGCTAGTGCAGCCAATACATCACGAAGAAGCACAAA
GAACCAAATTAATGCCGTGGCTTCCTCTTTTCTCTTGCTCTTATTTCTAT
CTCTCCTTCCCCCTCCCTACATGCATTCTCTTATTCCTCCTGCGCGTCTG
TCTACATCACACTAGAACGCGCAAGTTCTGTTTGTTTCCTCCCTCTCTTC
TATCTATATCTATGACATGGATGATATTTGTATACAGGTTTATGGAGGGG
TGTGTGGGTACACTTGACTGCTTGATTGCATATGCGTTGGAGAAAGGAGA
TCTTTTCCTCTCCTTTTGTTGCATGCGCGCACCGGCGACTATCTTCCTTT
TCCTCCATTTTACAAAGACATGGGAAAAAGGGTGTCTTCCTCCCGACGGC
GGCGCACCTCCTCCTCCTTATCCACCTCCTGCTCCCACCGCACCTGCCGC
TCTTCTTCCGCCGACTTCCCTTCCTCCTCCTCCTCCTCCTCTTCCTGACT
CCTCCTCAACTTTTGCCACCAAAAAGGCTTCCTCAATCGCTCCTCCCGCT
GCTGCTTTTCCGAGACGCACACGGAAGCATCGAACTCTGCCCCCTCATTC
TGACCATCCTCTTCTCCCTCTCCATAAAAATCTCTGCGCACGGCTCGCTC
TAACCATCCCTCCTCTTCCCCTGCCTCGTCCTCCCACCCTCCCTCCTGCA
CGCCCAACCTCAATGCCCCGGCCATGGGCTCTTCGATCGTCTTGCTGCTG
CTATCAACAGGGGGGTGGGTTGCATCAACGCGAGGGTTCTTGCTATAGCT
ATCGCTGCTGCTGCTGCTACTGCTGCTGCTGCTGCTGCTACTGCTGCTGC
TGCTGCTGCTGCTGCTGC

protein sequence of jgi.p|Nanoce1779_2|672931

>mRNA_7687-protein ID=mRNA_7687-protein|Name=jgi.p|Nanoce1779_2|672931|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MPPPILVTYEIIGPADAAETGLTSSFELLGYNTSSNFSREVPTVQALREA
FPYLGKFHFRAKIPLPLSTPSQYAWLDLADDDAPLPVWVERNAQQCVEIR
ALPLVLPEAPGEDEEEDGGELDFSEPDLDQDIVEASTCGGGEGGWEKGYG
YEARARSRQMEEQGRQSSSLSSSSHPSSSWSRQLKDAGESVLTSDVARDL
TKKGLKVGKQVGKQVNKLWRLVGEGLAGGGGGGGGEGREEGEYPSSPHGP
SAGAVRYLRKWEEALVTPPDAELLSTLGAALFPPGEGGREGGPGGKINWR
RAGCEGEEPIRDLRGTGSMCAKCLIYTARTYPRKIQQILSRGEEDEEEGR
EGGHAYPLVGVANSLTLMLADIFKLRDGRYVHVQNVFWPLFEGGGYGTIE
EVFSAALGYLDRRWVETEAGIEGFPRLVQHVRRGLEGVLGQAPVSLPHFQ
AMAEEAGLYME*

mRNA from alignment at scaffold_21:80243..83779-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7687 ID=mRNA_7687|Name=jgi.p|Nanoce1779_2|672931|organism=Nannochloropsis oceanica|type=mRNA|length=3537bp|location=Sequence derived from alignment at scaffold_21:80243..83779- (Nannochloropsis oceanica)
GTTCGCTCTGGTCCCTGGTCTCCGTGCCGCTAAAAAAAAAGGATCAGTAG
AGCGTATCCCTGTATAAAAGGTTGTGTCTTGCATGTGTCCTCGGTCAGAG
AGGGACATGAAGTGGAGGCAAGAGCAACTTGACGTCGTTGCAACTAGGAT
GATGCCGAGAATGATGGCTGAGGAACTCACACACTGCCTTCCCTACGCCC
CTATTTTTTCATTTTACACATCCATTAGCGCAGGTTTTCCAGAGGCTCTC
GTGCAGAGAGACCGCTATTTGCCGCATCCGGAGTCTATTCTCTCAAGCAG
CATCACCATTCCTTTCTCCCCGCTACGCCCTAGACTAGACGCCACTCCAT
ATAACGTGAAAGGAAGCGTACCAAGGCCTGTCGCCGCTATCGTCCAAGCG
TCACCCCCATAAACGTTACCCGCTTTTTCTTCTCACAAACCAACATGCCC
CCCCCCATCCTCGTCACCTACGAAATCATTGGGCCCGCCGATGCGGCCGA
AACCGGGTTGACATCCTCCTTTGAACTCCTGGGCTATAACACAAGCAGCA
ACTTCTCAAGAGAAGTCCCGACCGTCCAAGCCCTGCGCGAAGCCTTCCCC
TACCTGGGCAAATTCCATTTTCGAGCGAAAATTCCCCTTCCCTTATCCAC
ACCGTCACAATATGCGTGGTTAGACCTAGCCGACGACGACGCTCCCTTGC
CTGTATGGGTGGAGAGGAATGCACAGCAATGCGTGGAAATACGGGCACTG
CCATTGGTCTTGCCAGAGGCGCCAGGAGAGGACGAGGAGGAAGATGGGGG
GGAGCTAGACTTTAGTGAACCTGATCTGGATCAAGATATTGTAGAGGCGT
CAACGTGTGGAGGTGGAGAAGGGGGATGGGAGAAAGGATATGGGTATGAA
GCACGAGCCCGCTCTCGTCAGATGGAAGAACAAGGACGGCAATCCTCCTC
CTTATCGTCATCCTCCCACCCCTCCAGCAGCTGGTCTAGACAGCTCAAAG
ACGCGGGTGAGTCTGTCCTGACCTCAGACGTCGCCCGGGACCTGACCAAA
AAGGGCCTGAAAGTAGGGAAGCAAGTCGGGAAACAAGTGAATAAACTGTG
GAGGCTCGTAGGGGAAGGACTCGCTGGAGGAGGAGGGGGAGGGGGAGGAG
AAGGACGAGAAGAAGGAGAATACCCCTCCTCCCCCCATGGGCCAAGTGCG
GGTGCGGTTCGGTACTTGAGGAAATGGGAGGAGGCACTGGTGACCCCGCC
AGACGCAGAATTGCTTTCGACGCTTGGGGCGGCCTTGTTTCCTCCCGGGG
AAGGGGGGAGGGAGGGAGGACCGGGAGGTAAGATAAATTGGAGAAGGGCG
GGTTGTGAGGGAGAGGAGCCCATCAGGGATTTACGTGGGACGGGGAGTAT
GTGCGCGAAGTGTTTGATTTATACCGCGAGGACCTACCCGAGAAAAATCC
AGCAAATTTTGAGTAGGGGGGAGGAAGACGAGGAAGAAGGGAGGGAGGGA
GGGCACGCGTACCCTCTGGTGGGGGTTGCGAATAGTCTGACGTTGATGTT
GGCAGATATTTTTAAGTTGAGGGATGGGAGATATGTGCATGTGCAAAACG
TGTTCTGGCCTTTGTTTGAAGGGGGGGGATACGGAACGATAGAGGAGGTG
TTCAGTGCGGCCCTTGGGTACCTGGACCGGAGGTGGGTGGAGACGGAAGC
GGGGATAGAGGGGTTTCCACGGCTGGTGCAGCATGTGAGGAGGGGGTTGG
AGGGAGTTCTAGGGCAGGCTCCAGTGAGCTTACCTCACTTTCAAGCCATG
GCGGAGGAAGCAGGACTGTACATGGAGTGATGGAGAAGGATATCAGGGGG
GGCCGGAAGGAGGAAGAGAGAAGGGAGCACACCGAGAAGTATCGGAAAAC
AATGTATATGCTGAGATCGTCGAGCAGATAACGACGGGATGTGTCTCGTC
CTTTTTCTGTTCAGGTACTTCATCTTTCGGTTTTTGCCACTGTATTCCCT
TCTCATGGCAACTACCCTCTGAACGAGACTCCGGCAGCTCGTCTGTGCCT
CTGCCTGCACTCCTTCCATCCGTTCCTCCCTCCTCTTCTAGGCGGTGCCC
CAGGACAAGAGCAGCACGTTGGCCCACAAAATAAGAAAGAATTTGGTGGT
CTCTGTGCTCGTGCTTGTCGTCGTCTTTTTTGCGCCGCCGCTACCGCTGC
CGCTGCTGCTGCTGATACGTGGTAACGATTGAATTGAACATTGAACATGA
CGTGCGCAGGTATGTGTGAATGTATATCCTATCTCTCACTCTCACAAAAT
TCCAATCAACAACAAGGATCCAGGAAGGAACCTCCTCTTAATCTAGACAC
TAAATCACTCTTTGTCCCCCAACCGTCGTTTTCGTGTTTGAGTTTCTCCG
TCTCTTTTCTCCTTTCTTTCTCTTTCTGGGCATTATCCCTCTCCCTCTAT
TTCTACAAGCTACAATTCCATTCCATCTTCGCAATTCTTCCCTCTCTAAC
CCTAACCCTAACCCTAACACTCTCTCCTCTTTCGATGTTTTTCGTGACAT
CTGGCAGTGACATAACAATTCTATTTCTACTGCTAAAACTGCTACCGCCG
CTGCTGCTGCAACCAGCTAGTGCAGCCAATACATCACGAAGAAGCACAAA
GAACCAAATTAATGCCGTGGCTTCCTCTTTTCTCTTGCTCTTATTTCTAT
CTCTCCTTCCCCCTCCCTACATGCATTCTCTTATTCCTCCTGCGCGTCTG
TCTACATCACACTAGAACGCGCAAGTTCTGTTTGTTTCCTCCCTCTCTTC
TATCTATATCTATGACATGGATGATATTTGTATACAGGTTTATGGAGGGG
TGTGTGGGTACACTTGACTGCTTGATTGCATATGCGTTGGAGAAAGGAGA
TCTTTTCCTCTCCTTTTGTTGCATGCGCGCACCGGCGACTATCTTCCTTT
TCCTCCATTTTACAAAGACATGGGAAAAAGGGTGTCTTCCTCCCGACGGC
GGCGCACCTCCTCCTCCTTATCCACCTCCTGCTCCCACCGCACCTGCCGC
TCTTCTTCCGCCGACTTCCCTTCCTCCTCCTCCTCCTCCTCTTCCTGACT
CCTCCTCAACTTTTGCCACCAAAAAGGCTTCCTCAATCGCTCCTCCCGCT
GCTGCTTTTCCGAGACGCACACGGAAGCATCGAACTCTGCCCCCTCATTC
TGACCATCCTCTTCTCCCTCTCCATAAAAATCTCTGCGCACGGCTCGCTC
TAACCATCCCTCCTCTTCCCCTGCCTCGTCCTCCCACCCTCCCTCCTGCA
CGCCCAACCTCAATGCCCCGGCCATGGGCTCTTCGATCGTCTTGCTGCTG
CTATCAACAGGGGGGTGGGTTGCATCAACGCGAGGGTTCTTGCTATAGCT
ATCGCTGCTGCTGCTGCTACTGCTGCTGCTGCTGCTGCTACTGCTGCTGT
GCAGAAGCTCGTACGAGCTGGTGGTCGTGGCCAAACGCTGTGCAGGGCTG
TTGTTATTGTTGCTATTGCTGCTGCTGCTGCTGCTGC

Coding sequence (CDS) from alignment at scaffold_21:80243..83779-

>mRNA_7687 ID=mRNA_7687|Name=jgi.p|Nanoce1779_2|672931|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_21:80243..83779- (Nannochloropsis oceanica)
ATGCCCCCCCCCATCCTCGTCACCTACGAAATCATTGGGCCCGCCGATGC
GGCCGAAACCGGGTTGACATCCTCCTTTGAACTCCTGGGCTATAACACAA
GCAGCAACTTCTCAAGAGAAGTCCCGACCGTCCAAGCCCTGCGCGAAGCC
TTCCCCTACCTGGGCAAATTCCATTTTCGAGCGAAAATTCCCCTTCCCTT
ATCCACACCGTCACAATATGCGTGGTTAGACCTAGCCGACGACGACGCTC
CCTTGCCTGTATGGGTGGAGAGGAATGCACAGCAATGCGTGGAAATACGG
GCACTGCCATTGGTCTTGCCAGAGGCGCCAGGAGAGGACGAGGAGGAAGA
TGGGGGGGAGCTAGACTTTAGTGAACCTGATCTGGATCAAGATATTGTAG
AGGCGTCAACGTGTGGAGGTGGAGAAGGGGGATGGGAGAAAGGATATGGG
TATGAAGCACGAGCCCGCTCTCGTCAGATGGAAGAACAAGGACGGCAATC
CTCCTCCTTATCGTCATCCTCCCACCCCTCCAGCAGCTGGTCTAGACAGC
TCAAAGACGCGGGTGAGTCTGTCCTGACCTCAGACGTCGCCCGGGACCTG
ACCAAAAAGGGCCTGAAAGTAGGGAAGCAAGTCGGGAAACAAGTGAATAA
ACTGTGGAGGCTCGTAGGGGAAGGACTCGCTGGAGGAGGAGGGGGAGGGG
GAGGAGAAGGACGAGAAGAAGGAGAATACCCCTCCTCCCCCCATGGGCCA
AGTGCGGGTGCGGTTCGGTACTTGAGGAAATGGGAGGAGGCACTGGTGAC
CCCGCCAGACGCAGAATTGCTTTCGACGCTTGGGGCGGCCTTGTTTCCTC
CCGGGGAAGGGGGGAGGGAGGGAGGACCGGGAGGTAAGATAAATTGGAGA
AGGGCGGGTTGTGAGGGAGAGGAGCCCATCAGGGATTTACGTGGGACGGG
GAGTATGTGCGCGAAGTGTTTGATTTATACCGCGAGGACCTACCCGAGAA
AAATCCAGCAAATTTTGAGTAGGGGGGAGGAAGACGAGGAAGAAGGGAGG
GAGGGAGGGCACGCGTACCCTCTGGTGGGGGTTGCGAATAGTCTGACGTT
GATGTTGGCAGATATTTTTAAGTTGAGGGATGGGAGATATGTGCATGTGC
AAAACGTGTTCTGGCCTTTGTTTGAAGGGGGGGGATACGGAACGATAGAG
GAGGTGTTCAGTGCGGCCCTTGGGTACCTGGACCGGAGGTGGGTGGAGAC
GGAAGCGGGGATAGAGGGGTTTCCACGGCTGGTGCAGCATGTGAGGAGGG
GGTTGGAGGGAGTTCTAGGGCAGGCTCCAGTGAGCTTACCTCACTTTCAA
GCCATGGCGGAGGAAGCAGGACTGTACATGGAGTGA

Synonyms

Publications