jgi.p|Nanoce1779_2|166063, mRNA_7685 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|166063
Unique Name	mRNA_7685
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1831
Alignment location	scaffold_21:78280..80646 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	166149
Track	FilteredModels2
ProteinId	166063

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:78280..80646 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|166063	gene_7685	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|166063	mRNA_7685-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7685	CDS_7685	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:78280..80646+
coding sequence from alignment at scaffold_21:78280..80646+

mRNA sequence

>mRNA_7685 ID=mRNA_7685|Name=jgi.p|Nanoce1779_2|166063|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp
TCCTCCGAGTCACAGTAACATTTGTTTTTTTCATGCCACACCTAATTTTT
CCTGTTCCAAATCACGGCAGTCTATGAACCTTGTGAGTCATTTGGCCGTA
ATATCGTGCTGCTGGTCGCGTTGCCGGGTGCCCAAGCTCCCCAATCGCGC
TACTCACACACGCGCCACAGAGATTCAGCAGGAAGAAGCCGTTCATAGCT
CCCTCTCCCACATTCATCCCCCGTCCTCCTTGCCACCCACATCAGACAGC
CATGCTGGACACCATCATCCCAACTAATATCTCCGTGAGTCTACACGCTC
GACCAGTCATTAAGAGCTCAGAGGCCTTTAAACCTCGCTGTCATGCACCC
TCCACCTCCATCTCCACCTCGTCCTTGCCTGCAACCGATGCCCCCTCGGC
CATCTGGATGATCGACGGGCCGCATCTGCAAAAAGCGCTGGACGCCTACT
TCCCTGGTCTGGCCCAGAACGAGCTTCCTGTCGTCTTGCAAGGCTTGAAG
ACCTCCCTGGAGAGCGAGATCGGCGTGATATTCACTAAAAGCATCATTCA
CGACTGCAGCGCCCATCCCGGCCAGTCCACCTCCCTCGCCAAGCTGCTAA
CCGCCAATCCTATCGCTGCCCGCGTGCGCATGCATACACTCAAGGCTGTA
GCAGGCGCCGCGGTGGACCCCCACACATGGCTACCTGTCCTGCGACAGCA
CAGCAGCAGCAGCAGCAGCAGCAGCAGCTTGTATAGCTGCAGCAACAGCA
GCAACAGCAGCATTGCGTTGCTGACTGGGAATGGTGGGGAGAATTTCCAA
GGAGGGGGGGATGGAGGGAAGACAACTCTTCTCGTCGAAACGGGGCTCGA
CGTGGCCCTGTCGCTCGACCTCTTGCGACACGCTTCCTCCTCATCCATCC
CTCCGTCTCCTCCTCCCATCCTGGTCGTCCTAAGCGCCCGATCCGAGCTT
AGCGAGACTTTGGAAGTCGTTGCCGCCAAGGGAGAATCGCAAGCACGTAA
AGGAGGTGGGGGAGGGCGGGCAGGAGGGAGGAATGTCTTCGTGGTCGGTC
TCGAGAAGGAAGTCGCTGGCACCCCCCTGGCTCAGTACACTTTTCCTGGG
GAGAGAGGGGAGGAGGGAGGGAGGGGACAACGAGAAAGAACCACCACCCT
CGACAAGCTCCTCATCTCTGCCGCTGAAGCCCTCTTGTGGCACCGTCGTC
GCCTCCGCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGATAGGAATACGGGGGGAAGAGTGTCCTCGAGGGGCCGCTTG
TGACTTCCTCCGTGGCACTTCTGCCTATAGACGCGTCAGTTGTGGCAGTA
GCAGCAAGACCAACAAGCAACCTGCTCGCATGTCCCCTACCGGCGCCGGA
GGAGGGAGTGGTCAGACGAGCCCTCGTCCTTTTACGACTCACAAATTAGA
TCACTTGACTCTCTTCCATCACCCGTGTGGGGCAGGGTGGGGGTGTCATA
ACGGGGGGCCCTACCACCAAGCCACATTCCCCCACACCACAACCAGCAGC
AGCAGCAGCACGATAGCTATAGCAAGAACCCTCGCGTTGATGCAACCCAC
CCCCCTGTTGATAGCAGCAGCAAGACGATCGAAGAGCCCATGGCCGGGGC
ATTGAGGTTGGGCGTGCAGGAGGGAGGGTGGGAGGACGAGGCAGGGGAAG
AGGAGGGATGGTTAGAGCGAGCCGTGCGCAGAGATTTTTATGGAGAGGGA
GAAGAGGATGGTCAGAATGAGGGGGCAGAGTTCGATGCTTCCGTGTGCGT
CTCGGAAAAGCAGCAGCGGGAGGAGCGATTG

protein sequence of jgi.p|Nanoce1779_2|166063

>mRNA_7685-protein ID=mRNA_7685-protein|Name=jgi.p|Nanoce1779_2|166063|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MLDTIIPTNISVSLHARPVIKSSEAFKPRCHAPSTSISTSSLPATDAPSA
IWMIDGPHLQKALDAYFPGLAQNELPVVLQGLKTSLESEIGVIFTKSIIH
DCSAHPGQSTSLAKLLTANPIAARVRMHTLKAVAGAAVDPHTWLPVLRQH
SSSSSSSSSLYSCSNSSNSSIALLTGNGGENFQGGGDGGKTTLLVETGLD
VALSLDLLRHASSSSIPPSPPPILVVLSARSELSETLEVVAAKGESQARK
GGGGGRAGGRNVFVVGLEKEVAGTPLAQYTFPGERGEEGGRGQRERTTTL
DKLLISAAEALLWHRRRLRQQQQQQQQQQQQQQQQQIGIRGEECPRGAAC
DFLRGTSAYRRVSCGSSSKTNKQPARMSPTGAGGGSGQTSPRPFTTHKLD
HLTLFHHPCGAGWGCHNGGPYHQATFPHTTTSSSSSTIAIARTLALMQPT
PLLIAAARRSKSPWPGH*

mRNA from alignment at scaffold_21:78280..80646+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7685 ID=mRNA_7685|Name=jgi.p|Nanoce1779_2|166063|organism=Nannochloropsis oceanica|type=mRNA|length=2367bp|location=Sequence derived from alignment at scaffold_21:78280..80646+ (Nannochloropsis oceanica)
TCCTCCGAGTCACAGTAACATTTGTTTTTTTCATGCCACACCTAATTTTT
CCTGTTCCAAATCACGGCAGTCTATGAACCTTGTGAGTCATTTGGCCGTA
ATATCGTGCTGCTGGTCGCGTTGCCGGGTGCCCAAGCTCCCCAATCGCGC
TACTCACACACGCGCCACAGAGATTCAGCAGGAAGAAGCCGTTCATAGCT
CCCTCTCCCACATTCATCCCCCGTCCTCCTTGCCACCCACATCAGACAGC
CATGCTGGACACCATCATCCCAACTAATATCTCCGTGAGTCTACACGCTC
GACCAGTCATTAAGAGCTCAGAGGCCTTTAAACCTCGCTGTCATGCACCC
TCCACCTCCATCTCCACCTCGTCCTTGCCTGCAACCGATGCCCCCTCGGC
CATCTGGATGATCGACGGGCCGCATCTGCAAAAAGCGCTGGACGCCTACT
TCCCTGGTCTGGCCCAGAACGAGCTTCCTGTCGTCTTGCAAGGCTTGAAG
ACCTCCCTGGAGAGCGAGATCGGCGTGATATTCACTAAAAGGTGCGTGGC
AAGGACGGGCACGTACGACGAATCAAAGCACATTCGGATCTCTCACACGT
CCACGTGGGGAGCACTATGTTCTCCTTTCAGAGCCACCATTCCCATCAGT
AATCACTACATACACACCAATCACATCACTACACTCTTCATGAGTCTTCA
TGGTGACCTTCCCTTATTCCACTTCTCTTTCCCCGCCTCGTGTCCTCCAC
CCGATCAAAACTTTCATCTTCAAGCATCGCCTACCACCCCCTTCACGCTT
CCACACACAATGCTTCCCCCTTTTAAAGAACTACATATATGCAATTCGCC
ACGAATCCAAGCAGAGCAAGCCCATTAAAAGCTTCTCCTTTGTAACGTAG
CCCCCCTCAGCCTCCTCACCCCCACCCTTCGTCCCTCACAGCATCATTCA
CGACTGCAGCGCCCATCCCGGCCAGTCCACCTCCCTCGCCAAGCTGCTAA
CCGCCAATCCTATCGCTGCCCGCGTGCGCATGCATACACTCAAGGCTGTA
GCAGGCGCCGCGGTGGACCCCCACACATGGCTACCTGTCCTGCGACAGCA
CAGCAGCAGCAGCAGCAGCAGCAGCAGCTTGTATAGCTGCAGCAACAGCA
GCAACAGCAGCATTGCGTTGCTGACTGGGAATGGTGGGGAGAATTTCCAA
GGAGGGGGGGATGGAGGGAAGACAACTCTTCTCGTCGAAACGGGGCTCGA
CGTGGCCCTGTCGCTCGACCTCTTGCGACACGCTTCCTCCTCATCCATCC
CTCCGTCTCCTCCTCCCATCCTGGTCGTCCTAAGCGCCCGATCCGAGCTT
AGCGAGACTTTGGAAGTCGTTGCCGCCAAGGGAGAATCGCAAGCACGTAA
AGGAGGTGGGGGAGGGCGGGCAGGAGGGAGGAATGTCTTCGTGGTCGGTC
TCGAGAAGGAAGTCGCTGGCACCCCCCTGGCTCAGTACACTTTTCCTGGG
GAGAGAGGGGAGGAGGGAGGGAGGGGACAACGAGAAAGAACCACCACCCT
CGACAAGCTCCTCATCTCTGCCGCTGAAGCCCTCTTGTGGCACCGTCGTC
GCCTCCGCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGATAGGAATACGGGGGGAAGAGTGTCCTCGAGGGGCCGCTTG
TGACTTCCTCCGTGGCACTTCTGCCTATAGACGCGTCAGTTGTGGCAGTA
GCAGCAAGACCAACAAGCAACCTGCTCGCATGTCCCCTACCGGCGCCGGA
GGAGGGAGTGGTCAGACGAGCCCTCGTCCTTTTACGACTCACAAATTAGA
TCACTTGACTCTCTTCCATCACCCGTGTGGGGCAGGGTGGGGGTGTCATA
ACGGGGGGCCCTACCACCAAGCCACATTCCCCCACACCACAACCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAGCAACAATAACAA
CAGCCCTGCACAGCGTTTGGCCACGACCACCAGCTCGTACGAGCTTCTGC
ACAGCAGCAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCGAT
AGCTATAGCAAGAACCCTCGCGTTGATGCAACCCACCCCCCTGTTGATAG
CAGCAGCAAGACGATCGAAGAGCCCATGGCCGGGGCATTGAGGTTGGGCG
TGCAGGAGGGAGGGTGGGAGGACGAGGCAGGGGAAGAGGAGGGATGGTTA
GAGCGAGCCGTGCGCAGAGATTTTTATGGAGAGGGAGAAGAGGATGGTCA
GAATGAGGGGGCAGAGTTCGATGCTTCCGTGTGCGTCTCGGAAAAGCAGC
AGCGGGAGGAGCGATTG

Coding sequence (CDS) from alignment at scaffold_21:78280..80646+

>mRNA_7685 ID=mRNA_7685|Name=jgi.p|Nanoce1779_2|166063|organism=Nannochloropsis oceanica|type=CDS|length=4212bp|location=Sequence derived from alignment at scaffold_21:78280..80646+ (Nannochloropsis oceanica)
ATGCTGGACACCATCATCCCAACTAATATCTCCGTGAGTCTACACGCTCG
ACCAGTCATTAAGAGCTCAGAGGCCTTTAAACCTCGCTGTCATGCACCCT
CCACCTCCATCTCCACCTCGTCCTTGCCTGCAACCGATGCCCCCTCGGCC
ATCTGGATGATCGACGGGCCGCATCTGCAAAAAGCGCTGGACGCCTACTT
CCCTGGTCTGGCCCAGAACGAGCTTCCTGTCGTCTTGCAAGGCTTGAAGA
CCTCCCTGGAGAGCGAGATCGGCGTGATATTCACTAAAAGCATCATTCAC
GACTGCAGCGCCCATCCCGGCCAGTCCACCTCCCTCGCCAAGCTGCTAAC
CGCCAATCCTATCGCTGCCCGCGTGCGCATGCATACACTCAAGGCTGTAG
CAGGCGCCGCGGTGGACCCCCACACATGGCTACCTGTCCTGCGACAGCAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCTTGTATAGCTGCAGCAACAGCAG
CAACAGCAGCATTGCGTTGCTGACTGGGAATGGTGGGGAGAATTTCCAAG
GAGGGGGGGATGGAGGGAAGACAACTCTTCTCGTCGAAACGGGGCTCGAC
GTGGCCCTGTCGCTCGACCTCTTGCGACACGCTTCCTCCTCATCCATCCC
TCCGTCTCCTCCTCCCATCCTGGTCGTCCTAAGCGCCCGATCCGAGCTTA
GCGAGACTTTGGAAGTCGTTGCCGCCAAGGGAGAATCGCAAGCACGTAAA
GGAGGTGGGGGAGGGCGGGCAGGAGGGAGGAATGTCTTCGTGGTCGGTCT
CGAGAAGGAAGTCGCTGGCACCCCCCTGGCTCAGTACACTTTTCCTGGGG
AGAGAGGGGAGGAGGGAGGGAGGGGACAACGAGAAAGAACCACCACCCTC
GACAAGCTCCTCATCTCTGCCGCTGAAGCCCTCTTGTGGCACCGTCGTCG
CCTCCGCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGATAGGAATACGGGGGGAAGAGTGTCCTCGAGGGGCCGCTTGT
GACTTCCTCCGTGGCACTTCTGCCTATAGACGCGTCAGTTGTGGCAGTAG
CAGCAAGACCAACAAGCAACCTGCTCGCATGTCCCCTACCGGCGCCGGAG
GAGGGAGTGGTCAGACGAGCCCTCGTCCTTTTACGACTCACAAATTAGAT
CACTTGACTCTCTTCCATCACCCGTGTGGGGCAGGGTGGGGGTGTCATAA
CGGGGGGCCCTACCACCAAGCCACATTCCCCCACACCACAACCAGCAGCA
GCAGCAGCACGATAGCTATAGCAAGAACCCTCGCGTTGATGCAACCCACC
CCCCTGTTGATAGCAGCAGCAAGACGATCGAAGAGCCCATGGCCGGGGCA
TTGAATGCTGGACACCATCATCCCAACTAATATCTCCGTGAGTCTACACG
CTCGACCAGTCATTAAGAGCTCAGAGGCCTTTAAACCTCGCTGTCATGCA
CCCTCCACCTCCATCTCCACCTCGTCCTTGCCTGCAACCGATGCCCCCTC
GGCCATCTGGATGATCGACGGGCCGCATCTGCAAAAAGCGCTGGACGCCT
ACTTCCCTGGTCTGGCCCAGAACGAGCTTCCTGTCGTCTTGCAAGGCTTG
AAGACCTCCCTGGAGAGCGAGATCGGCGTGATATTCACTAAAAGCATCAT
TCACGACTGCAGCGCCCATCCCGGCCAGTCCACCTCCCTCGCCAAGCTGC
TAACCGCCAATCCTATCGCTGCCCGCGTGCGCATGCATACACTCAAGGCT
GTAGCAGGCGCCGCGGTGGACCCCCACACATGGCTACCTGTCCTGCGACA
GCACAGCAGCAGCAGCAGCAGCAGCAGCAGCTTGTATAGCTGCAGCAACA
GCAGCAACAGCAGCATTGCGTTGCTGACTGGGAATGGTGGGGAGAATTTC
CAAGGAGGGGGGGATGGAGGGAAGACAACTCTTCTCGTCGAAACGGGGCT
CGACGTGGCCCTGTCGCTCGACCTCTTGCGACACGCTTCCTCCTCATCCA
TCCCTCCGTCTCCTCCTCCCATCCTGGTCGTCCTAAGCGCCCGATCCGAG
CTTAGCGAGACTTTGGAAGTCGTTGCCGCCAAGGGAGAATCGCAAGCACG
TAAAGGAGGTGGGGGAGGGCGGGCAGGAGGGAGGAATGTCTTCGTGGTCG
GTCTCGAGAAGGAAGTCGCTGGCACCCCCCTGGCTCAGTACACTTTTCCT
GGGGAGAGAGGGGAGGAGGGAGGGAGGGGACAACGAGAAAGAACCACCAC
CCTCGACAAGCTCCTCATCTCTGCCGCTGAAGCCCTCTTGTGGCACCGTC
GTCGCCTCCGCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGATAGGAATACGGGGGGAAGAGTGTCCTCGAGGGGCCGC
TTGTGACTTCCTCCGTGGCACTTCTGCCTATAGACGCGTCAGTTGTGGCA
GTAGCAGCAAGACCAACAAGCAACCTGCTCGCATGTCCCCTACCGGCGCC
GGAGGAGGGAGTGGTCAGACGAGCCCTCGTCCTTTTACGACTCACAAATT
AGATCACTTGACTCTCTTCCATCACCCGTGTGGGGCAGGGTGGGGGTGTC
ATAACGGGGGGCCCTACCACCAAGCCACATTCCCCCACACCACAACCAGC
AGCAGCAGCAGCACGATAGCTATAGCAAGAACCCTCGCGTTGATGCAACC
CACCCCCCTGTTGATAGCAGCAGCAAGACGATCGAAGAGCCCATGGCCGG
GGCATTGAATGCTGGACACCATCATCCCAACTAATATCTCCGTGAGTCTA
CACGCTCGACCAGTCATTAAGAGCTCAGAGGCCTTTAAACCTCGCTGTCA
TGCACCCTCCACCTCCATCTCCACCTCGTCCTTGCCTGCAACCGATGCCC
CCTCGGCCATCTGGATGATCGACGGGCCGCATCTGCAAAAAGCGCTGGAC
GCCTACTTCCCTGGTCTGGCCCAGAACGAGCTTCCTGTCGTCTTGCAAGG
CTTGAAGACCTCCCTGGAGAGCGAGATCGGCGTGATATTCACTAAAAGCA
TCATTCACGACTGCAGCGCCCATCCCGGCCAGTCCACCTCCCTCGCCAAG
CTGCTAACCGCCAATCCTATCGCTGCCCGCGTGCGCATGCATACACTCAA
GGCTGTAGCAGGCGCCGCGGTGGACCCCCACACATGGCTACCTGTCCTGC
GACAGCACAGCAGCAGCAGCAGCAGCAGCAGCAGCTTGTATAGCTGCAGC
AACAGCAGCAACAGCAGCATTGCGTTGCTGACTGGGAATGGTGGGGAGAA
TTTCCAAGGAGGGGGGGATGGAGGGAAGACAACTCTTCTCGTCGAAACGG
GGCTCGACGTGGCCCTGTCGCTCGACCTCTTGCGACACGCTTCCTCCTCA
TCCATCCCTCCGTCTCCTCCTCCCATCCTGGTCGTCCTAAGCGCCCGATC
CGAGCTTAGCGAGACTTTGGAAGTCGTTGCCGCCAAGGGAGAATCGCAAG
CACGTAAAGGAGGTGGGGGAGGGCGGGCAGGAGGGAGGAATGTCTTCGTG
GTCGGTCTCGAGAAGGAAGTCGCTGGCACCCCCCTGGCTCAGTACACTTT
TCCTGGGGAGAGAGGGGAGGAGGGAGGGAGGGGACAACGAGAAAGAACCA
CCACCCTCGACAAGCTCCTCATCTCTGCCGCTGAAGCCCTCTTGTGGCAC
CGTCGTCGCCTCCGCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGATAGGAATACGGGGGGAAGAGTGTCCTCGAGGGG
CCGCTTGTGACTTCCTCCGTGGCACTTCTGCCTATAGACGCGTCAGTTGT
GGCAGTAGCAGCAAGACCAACAAGCAACCTGCTCGCATGTCCCCTACCGG
CGCCGGAGGAGGGAGTGGTCAGACGAGCCCTCGTCCTTTTACGACTCACA
AATTAGATCACTTGACTCTCTTCCATCACCCGTGTGGGGCAGGGTGGGGG
TGTCATAACGGGGGGCCCTACCACCAAGCCACATTCCCCCACACCACAAC
CAGCAGCAGCAGCAGCACGATAGCTATAGCAAGAACCCTCGCGTTGATGC
AACCCACCCCCCTGTTGATAGCAGCAGCAAGACGATCGAAGAGCCCATGG
CCGGGGCATTGA

Synonyms

Publications