jgi.p|Nanoce1779_2|545497, mRNA_7684 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|545497
Unique Name	mRNA_7684
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1612
Alignment location	scaffold_21:75866..77585 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	545583
Track	FilteredModels2
ProteinId	545497

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:75866..77585 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|545497	gene_7684	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|545497	mRNA_7684-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7684	CDS_7684	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:75866..77585+
coding sequence from alignment at scaffold_21:75866..77585+

mRNA sequence

>mRNA_7684 ID=mRNA_7684|Name=jgi.p|Nanoce1779_2|545497|organism=Nannochloropsis oceanica|type=mRNA|length=1612bp
ATTTCGAGGGGCACCCGACGTACACAGGGACAGGTATGGAAAGAGGAACA
CAAAGGGAGAGGGGTAAGAAAAAATTAACATCGTCTTGTCTTGTCTCTTT
TGAATGCACCCTCGGGGGGGCTATCTACCCAGCCCTCTAACCTCCCCCCT
TCCCACTCTCCCATTCCCCCTTCTTTCACTTCAACACCTGCTCAGACTAC
CATGCTAGCTTCTGCGCGAAGAAGTCGTTCTACCCGTCCCTTGCCCTACC
CCGTCCGCTTTGCCGTGCTCGGCGGTGGGTCTTTCGGCCTGGCCCTTGCC
TCTGTCTTGGGGAAGAAAAGCATTCCAGTCACTATCCTGGTGCGGAAAGA
AGACGTGGCCGAGCACATCAATTTGCATCATCGTCACCCTACCTATCTTT
CGGATATCTCATTGGCTCCCACGATTCGCGCGACTACCATTCCAGAGGAG
GCCTTAAATGATGCGTCCTTCATTATTCATGCGGTACCGGTGCAGTATTC
TAGAAAGTTTTTGGAGGACATTGCGCCGCATGTCCCAAAGAACACGCCGA
TTATCTCGACGAGCAAGGGCATAGAAACCGGCACCCTCTGCATGATGCAA
GACATCCTTCTAGAGACTCTTGGCCCAAACCGCGAGACTGCCTACCTGTC
TGGGCCCTCCTTTGCGCGTGAAATCGCCTTGGGGCTGGTCACTGCTGTCG
TGGCCGCCAGTGAGAGCGAGGCGCTCGCCAACGAGATATGCGACATCATG
GGCTGCAACTACTTCCGTGTTTTCACCTCCACCGACGTGGTGGGTGTCGA
GGTAGGGGGAGCTGTCAAGAACGTGATTGCCATTGCCGCTGGGATGTGTG
AGGGCCTGGGGCTGGGCACCAATGCAATGGCTGCTTTGGTGACCAGAGGA
TGCAACGAGATGCAGCGCCTGGCCTTGAGCCTAGGCGCACGGCCCACCAC
CTTGACGGGACTCTCCGGGGTAGGGGATACGTTCGGGACGTGCTTTGGCC
CCTTGAGCAGAAATCGGAATTTAGGAGTAAGGCTGGGGAAAGGAGAGAAG
TTGGAGGATATATTAGGGTCGTCAACAGAGGTGGCGGAGGGACACGCCAC
GGCCTTTTCTCTGGTACAATTGATTGAGAAGACCAATCGGGCTTACAGGA
GGGAGCTTGAGTTTCCGATTATATATGGGGTAAAGGAGATTTTGGAGGGA
AAGAGGACGCCCGCAGAGGGTTTGAGAGACTTAATGGCCATGCCTGTGAG
GGTGGAGATGTGGAATTTGTAGTTGGCATTTCACTCGTTTTATATATACA
TATATATGTGTGTCTGTGGTGGTGGAGAGTAGCGGAATAGAATGCGTTGG
AGGGGATTCGAGGAGGAGGTTTGGGGCGACCTAGGTACGGTGAGAGGGAG
AAAGGAGTGGAGTAGGGGATACGTGGAGTGAGGGGAAGAGGAGGAGAGAT
AAAAACTCAAAGTATTCATCGATCACGGTGAGCCAAGAAGCACGAATAAA
AAAGAAGAAAAGAAAGGAGCACCGGAGAAATTGATTGACGTGGGAAAAGG
CGGGCATTGTAGCGTTTCCGGTGTATAGTGAATGCAATTGATTTTGGAAG
AAAATCGCAAGT

protein sequence of jgi.p|Nanoce1779_2|545497

>mRNA_7684-protein ID=mRNA_7684-protein|Name=jgi.p|Nanoce1779_2|545497|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MLASARRSRSTRPLPYPVRFAVLGGGSFGLALASVLGKKSIPVTILVRKE
DVAEHINLHHRHPTYLSDISLAPTIRATTIPEEALNDASFIIHAVPVQYS
RKFLEDIAPHVPKNTPIISTSKGIETGTLCMMQDILLETLGPNRETAYLS
GPSFAREIALGLVTAVVAASESEALANEICDIMGCNYFRVFTSTDVVGVE
VGGAVKNVIAIAAGMCEGLGLGTNAMAALVTRGCNEMQRLALSLGARPTT
LTGLSGVGDTFGTCFGPLSRNRNLGVRLGKGEKLEDILGSSTEVAEGHAT
AFSLVQLIEKTNRAYRRELEFPIIYGVKEILEGKRTPAEGLRDLMAMPVR
VEMWNL*

mRNA from alignment at scaffold_21:75866..77585+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7684 ID=mRNA_7684|Name=jgi.p|Nanoce1779_2|545497|organism=Nannochloropsis oceanica|type=mRNA|length=1720bp|location=Sequence derived from alignment at scaffold_21:75866..77585+ (Nannochloropsis oceanica)
ATTTCGAGGGGCACCCGACGTACACAGGGACAGGTATGGAAAGAGGAACA
CAAAGGGAGAGGGGTAAGAAAAAATTAACATCGTCTTGTCTTGTCTCTTT
TGAATGCACCCTCGGGGGGGCTATCTACCCAGCCCTCTAACCTCCCCCCT
TCCCACTCTCCCATTCCCCCTTCTTTCACTTCAACACCTGCTCAGACTAC
CATGCTAGCTTCTGCGCGAAGAAGTCGTTCTACCCGTCCCTTGCCCTACC
CCGTCCGCTTTGCCGTGCTCGGCGGTGGGTCTTTCGGCCTGGCCCTTGCC
TCTGTCTTGGGGAAGAAAAGCATTCCAGTCACTATCCTGGTGCGGAAAGA
AGACGTGGCCGAGCACATCAATTTGCATCATCGTCACCCTACCTATCTTT
CGGATATCTCATTGGCTCCCACGATTCGCGCGACTACCATTCCAGAGGAG
GCCTTAAATGATGCGTCCTTCATTATTCATGCGGTACCGGTGCAGTATTC
TAGAAAGTTTTTGGAGGACATTGCGCCGCATGTCCCAAAGAACACGCCGA
TTATCTCGACGAGCAAGGTGAGCTATCTTTGTTGGTTTTCCTCTCTCTGT
TATTCGTTCCTTTTTGTGGGCCGTCTAAACCTCATCCTCCCTCCCTCCCT
CCCCTCTTGTCCTCCTCCTTTACAGGGCATAGAAACCGGCACCCTCTGCA
TGATGCAAGACATCCTTCTAGAGACTCTTGGCCCAAACCGCGAGACTGCC
TACCTGTCTGGGCCCTCCTTTGCGCGTGAAATCGCCTTGGGGCTGGTCAC
TGCTGTCGTGGCCGCCAGTGAGAGCGAGGCGCTCGCCAACGAGATATGCG
ACATCATGGGCTGCAACTACTTCCGTGTTTTCACCTCCACCGACGTGGTG
GGTGTCGAGGTAGGGGGAGCTGTCAAGAACGTGATTGCCATTGCCGCTGG
GATGTGTGAGGGCCTGGGGCTGGGCACCAATGCAATGGCTGCTTTGGTGA
CCAGAGGATGCAACGAGATGCAGCGCCTGGCCTTGAGCCTAGGCGCACGG
CCCACCACCTTGACGGGACTCTCCGGGGTAGGGGATACGTTCGGGACGTG
CTTTGGCCCCTTGAGCAGAAATCGGAATTTAGGAGTAAGGCTGGGGAAAG
GAGAGAAGTTGGAGGATATATTAGGGTCGTCAACAGAGGTGGCGGAGGGA
CACGCCACGGCCTTTTCTCTGGTACAATTGATTGAGAAGACCAATCGGGC
TTACAGGAGGGAGCTTGAGTTTCCGATTATATATGGGGTAAAGGAGATTT
TGGAGGGAAAGAGGACGCCCGCAGAGGGTTTGAGAGACTTAATGGCCATG
CCTGTGAGGGTGGAGATGTGGAATTTGTAGTTGGCATTTCACTCGTTTTA
TATATACATATATATGTGTGTCTGTGGTGGTGGAGAGTAGCGGAATAGAA
TGCGTTGGAGGGGATTCGAGGAGGAGGTTTGGGGCGACCTAGGTACGGTG
AGAGGGAGAAAGGAGTGGAGTAGGGGATACGTGGAGTGAGGGGAAGAGGA
GGAGAGATAAAAACTCAAAGTATTCATCGATCACGGTGAGCCAAGAAGCA
CGAATAAAAAAGAAGAAAAGAAAGGAGCACCGGAGAAATTGATTGACGTG
GGAAAAGGCGGGCATTGTAGCGTTTCCGGTGTATAGTGAATGCAATTGAT
TTTGGAAGAAAATCGCAAGT

Coding sequence (CDS) from alignment at scaffold_21:75866..77585+

>mRNA_7684 ID=mRNA_7684|Name=jgi.p|Nanoce1779_2|545497|organism=Nannochloropsis oceanica|type=CDS|length=2142bp|location=Sequence derived from alignment at scaffold_21:75866..77585+ (Nannochloropsis oceanica)
ATGCTAGCTTCTGCGCGAAGAAGTCGTTCTACCCGTCCCTTGCCCTACCC
CGTCCGCTTTGCCGTGCTCGGCGGTGGGTCTTTCGGCCTGGCCCTTGCCT
CTGTCTTGGGGAAGAAAAGCATTCCAGTCACTATCCTGGTGCGGAAAGAA
GACGTGGCCGAGCACATCAATTTGCATCATCGTCACCCTACCTATCTTTC
GGATATCTCATTGGCTCCCACGATTCGCGCGACTACCATTCCAGAGGAGG
CCTTAAATGATGCGTCCTTCATTATTCATGCGGTACCGGTGCAGTATTCT
AGAAAGTTTTTGGAGGACATTGCGCCGCATGTCCCAAAGAACACGCCGAT
TATCTCGACGAGCAAGGGCATAGAAACCGGCACCCTCTGCATGATGCAAG
ACATCCTTCTAGAGACTCTTGGCCCAAACCGCGAGACTGCCTACCTGTCT
GGGCCCTCCTTTGCGCGTGAAATCGCCTTGGGGCTGGTCACTGCTGTCGT
GGCCGCCAGTGAGAGCGAGGCGCTCGCCAACGAGATATGCGACATCATGG
GCTGCAACTACTTCCGTGTTTTCACCTCCACCGACGTGGTGGGTGTCGAG
GTAGGGGGAGCTGTCAAGAACGTGATTGCCATTGCCGCTGGGATGTGTGA
GGGCCTGGGGCTGGGCACCAATGCAATGGCTGCTTTGGTGACCAGAGGAT
GCAACGAGATGCAGCGCCTGGCCTTGAGCCTAGGCGCACGGCCCACCACC
TTGACGGGACTCTCCGGGGTAGGGGATACGTTCGGGACGTGCTTTGGCCC
CTTGAGCAGAAATCGGAATTTAGGAGTAAGGCTGGGGAAAGGAGAGAAGT
TGGAGGATATATTAGGGTCGTCAACAGAGGTGGCGGAGGGACACGCCACG
GCCTTTTCTCTGGTACAATTGATTGAGAAGACCAATCGGGCTTACAGGAG
GGAGCTTGAGTTTCCGATTATATATGGGGTAAAGGAGATTTTGGAGGGAA
AGAGGACGCCCGCAGAGGGTTTGAGAGACTTAATGGCCATGCCTGTGAGG
GTGGAGATGTGGAATTTGTAGATGCTAGCTTCTGCGCGAAGAAGTCGTTC
TACCCGTCCCTTGCCCTACCCCGTCCGCTTTGCCGTGCTCGGCGGTGGGT
CTTTCGGCCTGGCCCTTGCCTCTGTCTTGGGGAAGAAAAGCATTCCAGTC
ACTATCCTGGTGCGGAAAGAAGACGTGGCCGAGCACATCAATTTGCATCA
TCGTCACCCTACCTATCTTTCGGATATCTCATTGGCTCCCACGATTCGCG
CGACTACCATTCCAGAGGAGGCCTTAAATGATGCGTCCTTCATTATTCAT
GCGGTACCGGTGCAGTATTCTAGAAAGTTTTTGGAGGACATTGCGCCGCA
TGTCCCAAAGAACACGCCGATTATCTCGACGAGCAAGGGCATAGAAACCG
GCACCCTCTGCATGATGCAAGACATCCTTCTAGAGACTCTTGGCCCAAAC
CGCGAGACTGCCTACCTGTCTGGGCCCTCCTTTGCGCGTGAAATCGCCTT
GGGGCTGGTCACTGCTGTCGTGGCCGCCAGTGAGAGCGAGGCGCTCGCCA
ACGAGATATGCGACATCATGGGCTGCAACTACTTCCGTGTTTTCACCTCC
ACCGACGTGGTGGGTGTCGAGGTAGGGGGAGCTGTCAAGAACGTGATTGC
CATTGCCGCTGGGATGTGTGAGGGCCTGGGGCTGGGCACCAATGCAATGG
CTGCTTTGGTGACCAGAGGATGCAACGAGATGCAGCGCCTGGCCTTGAGC
CTAGGCGCACGGCCCACCACCTTGACGGGACTCTCCGGGGTAGGGGATAC
GTTCGGGACGTGCTTTGGCCCCTTGAGCAGAAATCGGAATTTAGGAGTAA
GGCTGGGGAAAGGAGAGAAGTTGGAGGATATATTAGGGTCGTCAACAGAG
GTGGCGGAGGGACACGCCACGGCCTTTTCTCTGGTACAATTGATTGAGAA
GACCAATCGGGCTTACAGGAGGGAGCTTGAGTTTCCGATTATATATGGGG
TAAAGGAGATTTTGGAGGGAAAGAGGACGCCCGCAGAGGGTTTGAGAGAC
TTAATGGCCATGCCTGTGAGGGTGGAGATGTGGAATTTGTAG

Synonyms

Publications