jgi.p|Nanoce1779_2|599643, mRNA_7681 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599643
Unique NamemRNA_7681
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1199
Alignment locationscaffold_21:69220..70418 +

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Properties
Property NameValue
TranscriptId599729
TrackFilteredModels2
ProteinId599643
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:69220..70418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599643gene_7681Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599643mRNA_7681-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7681CDS_7681Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7681 ID=mRNA_7681|Name=jgi.p|Nanoce1779_2|599643|organism=Nannochloropsis oceanica|type=mRNA|length=1199bp
ACAGGCATGTCATCACGTGTGGTTGCTGCAGGGGCGCGATTTTCTTGGCT
GCTCTTGGGGACAGGGGTGTTCTTCGCAGCGGGCGGAGCACTGGCCATGG
TGTATCTCCTGACCGACAGGCACCGCTGGCGTCGAGGGGCGGACATGGAC
TACGACGAGGACGATGCCGAAGAGGTGATATGTCTCTCTGACATTGAAGA
CGAGGAGGAGGTCACTGCATTGGATTCAAAGCCATTCCTGCTCCCGTTAT
ACGGACGCAACAGTAGGCAAGGTCGACGTCGTCAACGACGAGGAGGGGCG
CCTGGGATGCGCCACCCCCATCAGCCTGCAAAGAAGCTGCTCGGACCCCA
CGTTGAGTCGTTTCCTAAGGAAGAACGACTGCAGCATATCACGAAGATTG
TCATTCATACGAAGGAAGAAACGTTTAGCAAACAGAGGTGCAAAGCTTGC
TGGTTGCTGAAAAGGGAGTGTTTGTGTGAGGGGGTTGTGCCCGTCAAGCT
GCCGATCGATTTTAACGTCTGGCTGCATTATAAAGAATACCTACGTATAA
GCAACACAGGGCACCTTCTTACCCTCGCTCACCCCGGCTCTCGCCTACTA
GTGGAAGGAAGAGAAGCAGACGACGCCCGCCTGGCCCAGCTAGAGGCCGC
CGCTATCAGAGACCCTTTCTCCGTTGTTGCGCTCATGCCGTGCGCTGGGG
CCTTGTCAGTGGCAGAACTAAAACAAAAAAGGAGAGAACATGGAACGACG
GGGAGGTTGCAAGTGATCTTGCTGGATGGGACTTGGCGGCAGGCTCGGGC
GTTGAACAGGAGGGTAAGTGAGAAAGTGGTAAGGGTAAAGGTAGAGGTGG
CTGATCGACCGACGGTTTTTCGACTCCGACAACGGACGAGGGCCGATGGG
ATTAGTACGATCGAAGCGGCCCTGTGGTTCATCGAGGATTGGGGTGGGGG
TGGGACTGATGGAGGGGGAAAGGAAGGAGTGAAGGAGGTCTTGAGGATGT
TGGGCACTCACAACGAGAGGGTACTAAAGTCGTCGGGAAAATTGCATAAG
GTTGTGGACAGGGGGTTCGGGAAGCGGCAGGAGAAGGAGAATTGGGCACA
GAGAAACAAGGAGGAGGAGGAGGAGGAGGAGGAAGAGAAGGAGGAAGCGG
AGGAGGAAAGAGTGGAGCAGGGAGGGATAGAGGCAGGAGAATGACGGAG
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protein sequence of jgi.p|Nanoce1779_2|599643

>mRNA_7681-protein ID=mRNA_7681-protein|Name=jgi.p|Nanoce1779_2|599643|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MSSRVVAAGARFSWLLLGTGVFFAAGGALAMVYLLTDRHRWRRGADMDYD
EDDAEEVICLSDIEDEEEVTALDSKPFLLPLYGRNSRQGRRRQRRGGAPG
MRHPHQPAKKLLGPHVESFPKEERLQHITKIVIHTKEETFSKQRCKACWL
LKRECLCEGVVPVKLPIDFNVWLHYKEYLRISNTGHLLTLAHPGSRLLVE
GREADDARLAQLEAAAIRDPFSVVALMPCAGALSVAELKQKRREHGTTGR
LQVILLDGTWRQARALNRRVSEKVVRVKVEVADRPTVFRLRQRTRADGIS
TIEAALWFIEDWGGGGTDGGGKEGVKEVLRMLGTHNERVLKSSGKLHKVV
DRGFGKRQEKENWAQRNKEEEEEEEEEKEEAEEERVEQGGIEAGE*
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mRNA from alignment at scaffold_21:69220..70418+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7681 ID=mRNA_7681|Name=jgi.p|Nanoce1779_2|599643|organism=Nannochloropsis oceanica|type=mRNA|length=1199bp|location=Sequence derived from alignment at scaffold_21:69220..70418+ (Nannochloropsis oceanica)
ACAGGCATGTCATCACGTGTGGTTGCTGCAGGGGCGCGATTTTCTTGGCT
GCTCTTGGGGACAGGGGTGTTCTTCGCAGCGGGCGGAGCACTGGCCATGG
TGTATCTCCTGACCGACAGGCACCGCTGGCGTCGAGGGGCGGACATGGAC
TACGACGAGGACGATGCCGAAGAGGTGATATGTCTCTCTGACATTGAAGA
CGAGGAGGAGGTCACTGCATTGGATTCAAAGCCATTCCTGCTCCCGTTAT
ACGGACGCAACAGTAGGCAAGGTCGACGTCGTCAACGACGAGGAGGGGCG
CCTGGGATGCGCCACCCCCATCAGCCTGCAAAGAAGCTGCTCGGACCCCA
CGTTGAGTCGTTTCCTAAGGAAGAACGACTGCAGCATATCACGAAGATTG
TCATTCATACGAAGGAAGAAACGTTTAGCAAACAGAGGTGCAAAGCTTGC
TGGTTGCTGAAAAGGGAGTGTTTGTGTGAGGGGGTTGTGCCCGTCAAGCT
GCCGATCGATTTTAACGTCTGGCTGCATTATAAAGAATACCTACGTATAA
GCAACACAGGGCACCTTCTTACCCTCGCTCACCCCGGCTCTCGCCTACTA
GTGGAAGGAAGAGAAGCAGACGACGCCCGCCTGGCCCAGCTAGAGGCCGC
CGCTATCAGAGACCCTTTCTCCGTTGTTGCGCTCATGCCGTGCGCTGGGG
CCTTGTCAGTGGCAGAACTAAAACAAAAAAGGAGAGAACATGGAACGACG
GGGAGGTTGCAAGTGATCTTGCTGGATGGGACTTGGCGGCAGGCTCGGGC
GTTGAACAGGAGGGTAAGTGAGAAAGTGGTAAGGGTAAAGGTAGAGGTGG
CTGATCGACCGACGGTTTTTCGACTCCGACAACGGACGAGGGCCGATGGG
ATTAGTACGATCGAAGCGGCCCTGTGGTTCATCGAGGATTGGGGTGGGGG
TGGGACTGATGGAGGGGGAAAGGAAGGAGTGAAGGAGGTCTTGAGGATGT
TGGGCACTCACAACGAGAGGGTACTAAAGTCGTCGGGAAAATTGCATAAG
GTTGTGGACAGGGGGTTCGGGAAGCGGCAGGAGAAGGAGAATTGGGCACA
GAGAAACAAGGAGGAGGAGGAGGAGGAGGAGGAAGAGAAGGAGGAAGCGG
AGGAGGAAAGAGTGGAGCAGGGAGGGATAGAGGCAGGAGAATGACGGAG
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Coding sequence (CDS) from alignment at scaffold_21:69220..70418+

>mRNA_7681 ID=mRNA_7681|Name=jgi.p|Nanoce1779_2|599643|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_21:69220..70418+ (Nannochloropsis oceanica)
ATGTCATCACGTGTGGTTGCTGCAGGGGCGCGATTTTCTTGGCTGCTCTT
GGGGACAGGGGTGTTCTTCGCAGCGGGCGGAGCACTGGCCATGGTGTATC
TCCTGACCGACAGGCACCGCTGGCGTCGAGGGGCGGACATGGACTACGAC
GAGGACGATGCCGAAGAGGTGATATGTCTCTCTGACATTGAAGACGAGGA
GGAGGTCACTGCATTGGATTCAAAGCCATTCCTGCTCCCGTTATACGGAC
GCAACAGTAGGCAAGGTCGACGTCGTCAACGACGAGGAGGGGCGCCTGGG
ATGCGCCACCCCCATCAGCCTGCAAAGAAGCTGCTCGGACCCCACGTTGA
GTCGTTTCCTAAGGAAGAACGACTGCAGCATATCACGAAGATTGTCATTC
ATACGAAGGAAGAAACGTTTAGCAAACAGAGGTGCAAAGCTTGCTGGTTG
CTGAAAAGGGAGTGTTTGTGTGAGGGGGTTGTGCCCGTCAAGCTGCCGAT
CGATTTTAACGTCTGGCTGCATTATAAAGAATACCTACGTATAAGCAACA
CAGGGCACCTTCTTACCCTCGCTCACCCCGGCTCTCGCCTACTAGTGGAA
GGAAGAGAAGCAGACGACGCCCGCCTGGCCCAGCTAGAGGCCGCCGCTAT
CAGAGACCCTTTCTCCGTTGTTGCGCTCATGCCGTGCGCTGGGGCCTTGT
CAGTGGCAGAACTAAAACAAAAAAGGAGAGAACATGGAACGACGGGGAGG
TTGCAAGTGATCTTGCTGGATGGGACTTGGCGGCAGGCTCGGGCGTTGAA
CAGGAGGGTAAGTGAGAAAGTGGTAAGGGTAAAGGTAGAGGTGGCTGATC
GACCGACGGTTTTTCGACTCCGACAACGGACGAGGGCCGATGGGATTAGT
ACGATCGAAGCGGCCCTGTGGTTCATCGAGGATTGGGGTGGGGGTGGGAC
TGATGGAGGGGGAAAGGAAGGAGTGAAGGAGGTCTTGAGGATGTTGGGCA
CTCACAACGAGAGGGTACTAAAGTCGTCGGGAAAATTGCATAAGGTTGTG
GACAGGGGGTTCGGGAAGCGGCAGGAGAAGGAGAATTGGGCACAGAGAAA
CAAGGAGGAGGAGGAGGAGGAGGAGGAAGAGAAGGAGGAAGCGGAGGAGG
AAAGAGTGGAGCAGGGAGGGATAGAGGCAGGAGAATGA
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Synonyms
Publications