jgi.p|Nanoce1779_2|667768, mRNA_768 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|667768
Unique Name	mRNA_768
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1878
Alignment location	scaffold_2:391623..393500 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	667854
Track	FilteredModels2
ProteinId	667768

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:391623..393500 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667768	gene_768	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667768	mRNA_768-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_768	CDS_768	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:391623..393500+
coding sequence from alignment at scaffold_2:391623..393500+

mRNA sequence

>mRNA_768 ID=mRNA_768|Name=jgi.p|Nanoce1779_2|667768|organism=Nannochloropsis oceanica|type=mRNA|length=1878bp
GCCCCAGGGCGTTCCTCATCTCTTTAGCAAAACTCTCCAAAACTCATGCA
CATTTCACCCCATCCCCTGAAAGGTGCCCCCACCACCATGGTGGTGACGT
CCTTTTCCTCGCTGAGTGCCGATGAGCTCGTGACTCCGGCCTTGGACAAG
ACCTTTCGCGGCCACCGGAGTGGTGTGACCAGCCTCGCGTTCAGTCCCAC
TCTCAAACAGCTTGCCTCGGGTGGGGAGGATGGCACTGTCCTCGTCTGGC
ACTTCAAGCCTGGGCAAAGGGCCTTTAAATACGTTGGACACAAAGGTCCA
GTGCATTGCGTGCAGTTTTCGTCGTCGGGCCGCTTCTTGTCGTCTGGAGC
AGGGGATGCCACGGTGAAGTTGTGGGAGCCCTCAGCGCGGGGACGTTCCT
TGACCCTCAAGGGGCATTCGCGGGCTGTGCGGGCCGTGACCTTTTCGGGC
GATGACCGATTGCTGTTAACTGCATCGGATGACAAGACAGTCAAGCTTTG
GTCCGTAAATGATCGCCGTTTTCGAGGGAGCTTGCAGGGACATAGTCATT
GGGTGCGCACCGTGGCTTTGAGCCCTGATGGGCTAGCAGCTGCATCGGGG
TCTGATGATTGCTCCGTCCGCCTATGGGACGTCGAAAATCGCGAATGCAC
GTGTATCTTGACAGAGCCTCAAGGTGCCGTGACTTCAGTGGCGTATCACC
CTCGGGGCGCTTGTCTGGCCTCAGGGGGAATGGATAAATGCCTCCGCATT
TGGGACACGCGTTCCCAGGAATTGGTGCAGCAATACGCACCTGCCCACAT
CAAATCTATCACCTCTCTTACCTTTCACCAATCGGGCAATTTTGTGCTGA
CATCTTCCGACGACAGTACTCTCAAAATTTGGGATGTAAGGGAGGGGAGG
TTGTTGTTCACAGTGCATGGCCACCAGGGCCCTGTTGCTCAAGCCGCGTT
CAGTCAAGATACAGATAGCTCTTACTTTGCATCTGCCGGATTTCAAGATA
AGACTGTCATGATCTGGCAATCCAACTTGACATCCTACAACCGGCCTCGC
ACTAAAACCATCATCACTGCGCCAGCTGCTGCTTCTGCTCCTGCTCCTAC
AGCTGCTACAATAACTATTCCTGCTGCCACTTTTTCTCGGCCCTCATCCG
CATCATCCACCTCTTCCTCGACGCCCCGACGCTTGCCTTACACTCCTCAT
CGCTACACTTCATCGTCTTGCGGCGTTGCCGGTGCTCGTGGAAAAGGAGG
AGTGAGACTACCCACCCCTGCGTACCAGCAACCGTCGCAAGATGACTTTG
AGGAGGTCGAGGACGAAGAAGGGGAAGAAGGACGGATGTGGGAAGGAGTA
GGGCAAGATTGGACATCTAAGAGGCGCCCACAATGGCAGGAGGAGGAGGA
GAAAGTGGGGGAGGAGCAGGGGAATATGGTAGTGGATTACCACCTGATGC
CGCCGTCGGCGCCACCGTTGCAGTACGAGGAAGAAGACGAGCACGAGAGG
GGGGAGGGGAGAGAAGCGGGGGGAGAAAGATTGGTGTTCCCGACAGCTAA
TCCTACTGATAGAAGGTTCTCGCCGCCTTCTTCGTCATCGTCGTCTTCAG
ATGGGGCAGCAACGGCGAGAAAGAAAGGAAGAGAAGGGGGAGAGGGAGGA
GGAGGAGGAGCAGCAGATGCGAACGCGGTTTTGTTGTATCAAACCTTGTC
GTTATTAGCCGAGAGGATGAAGACACTTGAGGACCGGCTGGAGCATTTAG
GTATCATGGATGGGGGACGGGTAGGGATGGCGACGATCCCTATCAGCCAC
CACCACCACCACCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAACAGCA
GTGGGGTCGAGAACAAGAGGGTCACTAG

protein sequence of jgi.p|Nanoce1779_2|667768

>mRNA_768-protein ID=mRNA_768-protein|Name=jgi.p|Nanoce1779_2|667768|organism=Nannochloropsis oceanica|type=polypeptide|length=611bp
MHISPHPLKGAPTTMVVTSFSSLSADELVTPALDKTFRGHRSGVTSLAFS
PTLKQLASGGEDGTVLVWHFKPGQRAFKYVGHKGPVHCVQFSSSGRFLSS
GAGDATVKLWEPSARGRSLTLKGHSRAVRAVTFSGDDRLLLTASDDKTVK
LWSVNDRRFRGSLQGHSHWVRTVALSPDGLAAASGSDDCSVRLWDVENRE
CTCILTEPQGAVTSVAYHPRGACLASGGMDKCLRIWDTRSQELVQQYAPA
HIKSITSLTFHQSGNFVLTSSDDSTLKIWDVREGRLLFTVHGHQGPVAQA
AFSQDTDSSYFASAGFQDKTVMIWQSNLTSYNRPRTKTIITAPAAASAPA
PTAATITIPAATFSRPSSASSTSSSTPRRLPYTPHRYTSSSCGVAGARGK
GGVRLPTPAYQQPSQDDFEEVEDEEGEEGRMWEGVGQDWTSKRRPQWQEE
EEKVGEEQGNMVVDYHLMPPSAPPLQYEEEDEHERGEGREAGGERLVFPT
ANPTDRRFSPPSSSSSSSDGAATARKKGREGGEGGGGGAADANAVLLYQT
LSLLAERMKTLEDRLEHLGIMDGGRVGMATIPISHHHHHQQQQQQQQQQQ
QQWGREQEGH*

mRNA from alignment at scaffold_2:391623..393500+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_768 ID=mRNA_768|Name=jgi.p|Nanoce1779_2|667768|organism=Nannochloropsis oceanica|type=mRNA|length=1878bp|location=Sequence derived from alignment at scaffold_2:391623..393500+ (Nannochloropsis oceanica)
GCCCCAGGGCGTTCCTCATCTCTTTAGCAAAACTCTCCAAAACTCATGCA
CATTTCACCCCATCCCCTGAAAGGTGCCCCCACCACCATGGTGGTGACGT
CCTTTTCCTCGCTGAGTGCCGATGAGCTCGTGACTCCGGCCTTGGACAAG
ACCTTTCGCGGCCACCGGAGTGGTGTGACCAGCCTCGCGTTCAGTCCCAC
TCTCAAACAGCTTGCCTCGGGTGGGGAGGATGGCACTGTCCTCGTCTGGC
ACTTCAAGCCTGGGCAAAGGGCCTTTAAATACGTTGGACACAAAGGTCCA
GTGCATTGCGTGCAGTTTTCGTCGTCGGGCCGCTTCTTGTCGTCTGGAGC
AGGGGATGCCACGGTGAAGTTGTGGGAGCCCTCAGCGCGGGGACGTTCCT
TGACCCTCAAGGGGCATTCGCGGGCTGTGCGGGCCGTGACCTTTTCGGGC
GATGACCGATTGCTGTTAACTGCATCGGATGACAAGACAGTCAAGCTTTG
GTCCGTAAATGATCGCCGTTTTCGAGGGAGCTTGCAGGGACATAGTCATT
GGGTGCGCACCGTGGCTTTGAGCCCTGATGGGCTAGCAGCTGCATCGGGG
TCTGATGATTGCTCCGTCCGCCTATGGGACGTCGAAAATCGCGAATGCAC
GTGTATCTTGACAGAGCCTCAAGGTGCCGTGACTTCAGTGGCGTATCACC
CTCGGGGCGCTTGTCTGGCCTCAGGGGGAATGGATAAATGCCTCCGCATT
TGGGACACGCGTTCCCAGGAATTGGTGCAGCAATACGCACCTGCCCACAT
CAAATCTATCACCTCTCTTACCTTTCACCAATCGGGCAATTTTGTGCTGA
CATCTTCCGACGACAGTACTCTCAAAATTTGGGATGTAAGGGAGGGGAGG
TTGTTGTTCACAGTGCATGGCCACCAGGGCCCTGTTGCTCAAGCCGCGTT
CAGTCAAGATACAGATAGCTCTTACTTTGCATCTGCCGGATTTCAAGATA
AGACTGTCATGATCTGGCAATCCAACTTGACATCCTACAACCGGCCTCGC
ACTAAAACCATCATCACTGCGCCAGCTGCTGCTTCTGCTCCTGCTCCTAC
AGCTGCTACAATAACTATTCCTGCTGCCACTTTTTCTCGGCCCTCATCCG
CATCATCCACCTCTTCCTCGACGCCCCGACGCTTGCCTTACACTCCTCAT
CGCTACACTTCATCGTCTTGCGGCGTTGCCGGTGCTCGTGGAAAAGGAGG
AGTGAGACTACCCACCCCTGCGTACCAGCAACCGTCGCAAGATGACTTTG
AGGAGGTCGAGGACGAAGAAGGGGAAGAAGGACGGATGTGGGAAGGAGTA
GGGCAAGATTGGACATCTAAGAGGCGCCCACAATGGCAGGAGGAGGAGGA
GAAAGTGGGGGAGGAGCAGGGGAATATGGTAGTGGATTACCACCTGATGC
CGCCGTCGGCGCCACCGTTGCAGTACGAGGAAGAAGACGAGCACGAGAGG
GGGGAGGGGAGAGAAGCGGGGGGAGAAAGATTGGTGTTCCCGACAGCTAA
TCCTACTGATAGAAGGTTCTCGCCGCCTTCTTCGTCATCGTCGTCTTCAG
ATGGGGCAGCAACGGCGAGAAAGAAAGGAAGAGAAGGGGGAGAGGGAGGA
GGAGGAGGAGCAGCAGATGCGAACGCGGTTTTGTTGTATCAAACCTTGTC
GTTATTAGCCGAGAGGATGAAGACACTTGAGGACCGGCTGGAGCATTTAG
GTATCATGGATGGGGGACGGGTAGGGATGGCGACGATCCCTATCAGCCAC
CACCACCACCACCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAACAGCA
GTGGGGTCGAGAACAAGAGGGTCACTAG

Coding sequence (CDS) from alignment at scaffold_2:391623..393500+

>mRNA_768 ID=mRNA_768|Name=jgi.p|Nanoce1779_2|667768|organism=Nannochloropsis oceanica|type=CDS|length=1833bp|location=Sequence derived from alignment at scaffold_2:391623..393500+ (Nannochloropsis oceanica)
ATGCACATTTCACCCCATCCCCTGAAAGGTGCCCCCACCACCATGGTGGT
GACGTCCTTTTCCTCGCTGAGTGCCGATGAGCTCGTGACTCCGGCCTTGG
ACAAGACCTTTCGCGGCCACCGGAGTGGTGTGACCAGCCTCGCGTTCAGT
CCCACTCTCAAACAGCTTGCCTCGGGTGGGGAGGATGGCACTGTCCTCGT
CTGGCACTTCAAGCCTGGGCAAAGGGCCTTTAAATACGTTGGACACAAAG
GTCCAGTGCATTGCGTGCAGTTTTCGTCGTCGGGCCGCTTCTTGTCGTCT
GGAGCAGGGGATGCCACGGTGAAGTTGTGGGAGCCCTCAGCGCGGGGACG
TTCCTTGACCCTCAAGGGGCATTCGCGGGCTGTGCGGGCCGTGACCTTTT
CGGGCGATGACCGATTGCTGTTAACTGCATCGGATGACAAGACAGTCAAG
CTTTGGTCCGTAAATGATCGCCGTTTTCGAGGGAGCTTGCAGGGACATAG
TCATTGGGTGCGCACCGTGGCTTTGAGCCCTGATGGGCTAGCAGCTGCAT
CGGGGTCTGATGATTGCTCCGTCCGCCTATGGGACGTCGAAAATCGCGAA
TGCACGTGTATCTTGACAGAGCCTCAAGGTGCCGTGACTTCAGTGGCGTA
TCACCCTCGGGGCGCTTGTCTGGCCTCAGGGGGAATGGATAAATGCCTCC
GCATTTGGGACACGCGTTCCCAGGAATTGGTGCAGCAATACGCACCTGCC
CACATCAAATCTATCACCTCTCTTACCTTTCACCAATCGGGCAATTTTGT
GCTGACATCTTCCGACGACAGTACTCTCAAAATTTGGGATGTAAGGGAGG
GGAGGTTGTTGTTCACAGTGCATGGCCACCAGGGCCCTGTTGCTCAAGCC
GCGTTCAGTCAAGATACAGATAGCTCTTACTTTGCATCTGCCGGATTTCA
AGATAAGACTGTCATGATCTGGCAATCCAACTTGACATCCTACAACCGGC
CTCGCACTAAAACCATCATCACTGCGCCAGCTGCTGCTTCTGCTCCTGCT
CCTACAGCTGCTACAATAACTATTCCTGCTGCCACTTTTTCTCGGCCCTC
ATCCGCATCATCCACCTCTTCCTCGACGCCCCGACGCTTGCCTTACACTC
CTCATCGCTACACTTCATCGTCTTGCGGCGTTGCCGGTGCTCGTGGAAAA
GGAGGAGTGAGACTACCCACCCCTGCGTACCAGCAACCGTCGCAAGATGA
CTTTGAGGAGGTCGAGGACGAAGAAGGGGAAGAAGGACGGATGTGGGAAG
GAGTAGGGCAAGATTGGACATCTAAGAGGCGCCCACAATGGCAGGAGGAG
GAGGAGAAAGTGGGGGAGGAGCAGGGGAATATGGTAGTGGATTACCACCT
GATGCCGCCGTCGGCGCCACCGTTGCAGTACGAGGAAGAAGACGAGCACG
AGAGGGGGGAGGGGAGAGAAGCGGGGGGAGAAAGATTGGTGTTCCCGACA
GCTAATCCTACTGATAGAAGGTTCTCGCCGCCTTCTTCGTCATCGTCGTC
TTCAGATGGGGCAGCAACGGCGAGAAAGAAAGGAAGAGAAGGGGGAGAGG
GAGGAGGAGGAGGAGCAGCAGATGCGAACGCGGTTTTGTTGTATCAAACC
TTGTCGTTATTAGCCGAGAGGATGAAGACACTTGAGGACCGGCTGGAGCA
TTTAGGTATCATGGATGGGGGACGGGTAGGGATGGCGACGATCCCTATCA
GCCACCACCACCACCACCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAA
CAGCAGTGGGGTCGAGAACAAGAGGGTCACTAG

Synonyms

Publications