jgi.p|Nanoce1779_2|599634, mRNA_7678 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599634
Unique Name	mRNA_7678
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1406
Alignment location	scaffold_21:57336..58965 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599720
Track	FilteredModels2
ProteinId	599634

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:57336..58965 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599634	gene_7678	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599634	mRNA_7678-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7678	CDS_7678	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:57336..58965+
coding sequence from alignment at scaffold_21:57336..58965+

mRNA sequence

>mRNA_7678 ID=mRNA_7678|Name=jgi.p|Nanoce1779_2|599634|organism=Nannochloropsis oceanica|type=mRNA|length=1406bp
CAACAGCCTAGAGTGGCCCACAACCACTAAACAACACGTCATATCGTGTG
GGCCCCTTAACCAGACTGAAAATAAGGTTATGGTCCCGCGGGGAGGGCCA
CGTGGCGGCAAGAGCAGCCACCACTCCATCGCTCGCCTGGTCGGCTCCAG
CAGCAGTGCCCTCTTCGAACTCCTGATCTTCCAACCCCTCGACACCTGCT
GCAAGCGCATCATCACTTATCAAGGCCGTTTGTTGACTGCGGAGGGCTTG
TCTCTTTCTGATAAGTACGGAAAGATACGGAGCGTCGTCTTCCGCGATAA
ACTCAACTCGGGTCCTTTTGACAAGCTCCGTTCCCTTTATGTTGGCCTCA
AGTTCGGTGCTAGCTACAAGATATGTCAACGCACTGCTGCATACGGCCTG
CAACCCTTCCTGTTTGATCATATCCATGCCACTTACCACGACAGCTTCAT
ATCTCTTGCGGGCCCAAAACGAGCCCGCTCCGTTGAATTTGCCACCGCTG
CCGCCATAATGGGCACGGTCGAAGTTGTCTTCATCCCCCTAGATACCCTC
AAAATAATTGCGCAAACCAACGCTTCCTCCCTACGTGGACGATCTTTCCT
TCAAATAGTCGAACAAGAGGGCTTTCGACTTTACAGAGGGGCCTCTTGGA
CCGTTCTAAGAAATTTCCCGGGTTCCTTTGCCTTGTTCGGTGGATCTGCG
TTGATAAAAGAAAAGGCATTTCATCTAGAGAATTATAAGGATGCAACGCT
ATTGCAAGAGCTAATAGCGAGCACGACGGGAGCAGTGTGGTCCTTGACGG
TTTCCAGTCCGGCGGACGTGATCAAGGCCAGGGTGCAGAGGGCGAGTCTG
TCGCCATCGGGGGAGGTGATGAAAGGACGGCAGATTCTGAGGGACCTGTT
GAGGAAGGAAGGGCCCTGGGCGTTGTTTAAGGGCTTGAATACAAAGTTCA
TGGTGGTGTGCCCTAAGCTGGTGATGTCCTTCACGGTCTACAACCAGGTG
ATGAGCTGGCTCGACAATTGGGTGGAGAGCAATATAGAGAAAAACAAGAA
GAAAGGTAATTTAATAAAAAGCTGACTGCTGTATATGTTAAAAGGAACAC
AAACATTGAGATCTGTGTGTGTCAGCATGTGCATATGTCATTCGTTTGTA
TAATGTATCAGCGTCTGGATGAGCGCGTATCATTGAGAATCGCTGCATGA
ACGGCGGCAAAAAGGTAGGATAGCCGCGTTTCAACTTGAGATGATGGAGT
GTTTTGAGAGCACGAAGGGCGTGACAAGGAAGAATAAGAAAAAATATATT
TTAGGCATTTCGAATTCAAATAGAAAGGGAGGGAGGGGTGGAATTTTCAA
GGTCAAACACCCTCGTTAAAAAAAAGTAATAAATTGGCATTCTAGGTAGA
CGGAGG

protein sequence of jgi.p|Nanoce1779_2|599634

>mRNA_7678-protein ID=mRNA_7678-protein|Name=jgi.p|Nanoce1779_2|599634|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MVPRGGPRGGKSSHHSIARLVGSSSSALFELLIFQPLDTCCKRIITYQGR
LLTAEGLSLSDKYGKIRSVVFRDKLNSGPFDKLRSLYVGLKFGASYKICQ
RTAAYGLQPFLFDHIHATYHDSFISLAGPKRARSVEFATAAAIMGTVEVV
FIPLDTLKIIAQTNASSLRGRSFLQIVEQEGFRLYRGASWTVLRNFPGSF
ALFGGSALIKEKAFHLENYKDATLLQELIASTTGAVWSLTVSSPADVIKA
RVQRASLSPSGEVMKGRQILRDLLRKEGPWALFKGLNTKFMVVCPKLVMS
FTVYNQVMSWLDNWVESNIEKNKKKGNLIKS*

mRNA from alignment at scaffold_21:57336..58965+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7678 ID=mRNA_7678|Name=jgi.p|Nanoce1779_2|599634|organism=Nannochloropsis oceanica|type=mRNA|length=1630bp|location=Sequence derived from alignment at scaffold_21:57336..58965+ (Nannochloropsis oceanica)
CAACAGCCTAGAGTGGCCCACAACCACTAAACAACACGTCATATCGTGTG
GGCCCCTTAACCAGACTGAAAATAAGGTTATGGTCCCGCGGGGAGGGCCA
CGTGGCGGCAAGAGCAGCCACCACTCCATCGCTCGCCTGGTCGGCTCCAG
CAGCAGTGCCCTCTTCGAACTCCTGATCTTCCAACCCCTCGACACCTGCT
GCAAGCGCATCATCACTTATCAAGGCCGTTTGTTGACTGCGGAGGGCTTG
TCTCTTTCTGATAAGTACGGAAAGATACGGAGCGTCGTCTTCCGCGATAA
ACTCAACTCGGGTCCTTTTGACAAGCTCCGTTCCCTTTATGTTGGCCTCA
AGTTCGGTGCTAGCTACAAGATATGTCAACGCACTGCTGCATACGGCCTG
CAACCCTTCCTGTTTGATCATATCCATGCCACTTACCACGACAGCTTCAT
ATCTCTTGCGGGCCCAAAACGAGCCCGCTCCGTTGAATTTGCCACCGCTG
CCGCCATAATGGGCACGGTCGAAGTTGTCTTCATCCCCCTAGATACCCTC
AAAATAATTGCGCAAACCAACGCTTCCTCCCTACGTGGACGATCTTTCCT
TCAAATAGTCGAACAAGAGGGCTTTCGACTTTACAGAGGGGCCTCTTGGA
CCGTTCTAAGAAATTTCCCGGGTTCCTTTGCCTTGTTCGGTGGATCTGCG
TTGATAAAAGAAAAGGCATTTCATCTAGAGAATTATAAGGATGCAACGCT
ATTGCAAGAGCTAATAGCGAGCACGACGGGAGCAGTGTGGTCCTTGACGG
TTTCCAGTCCGGCGGACGTGATCAAGGCCAGGGTGCAGAGGGCGAGTCTG
TCGCCATCGGGGGAGGTGATGAAAGGACGGCAGATTCTGAGGGACCTGTT
GAGGAAGGAAGGGCCCTGGGCGTTGTTTAAGGGCTTGAATACAAAGTTCA
TGGTGGTATGTGGGCGAAGGAGGAAGGGTGGAAGGGAGGGAGGCTGGCGA
GTGGGCAGGTACTCATGGTAGGCTGCCGGCCACAATCGTGGAGGGAGTTG
CCTTGCACCCCTTGACGCTTCCCCGGCACATCTACAACTTGTTCTCGCGC
ACAACAATCACTTCAAGCCGCTCATGATTTTGCTACCCCCCTCCCCCCCT
TTTTTCTTCCACACACACACTCGTCGTAGGTGTGCCCTAAGCTGGTGATG
TCCTTCACGGTCTACAACCAGGTGATGAGCTGGCTCGACAATTGGGTGGA
GAGCAATATAGAGAAAAACAAGAAGAAAGGTAATTTAATAAAAAGCTGAC
TGCTGTATATGTTAAAAGGAACACAAACATTGAGATCTGTGTGTGTCAGC
ATGTGCATATGTCATTCGTTTGTATAATGTATCAGCGTCTGGATGAGCGC
GTATCATTGAGAATCGCTGCATGAACGGCGGCAAAAAGGTAGGATAGCCG
CGTTTCAACTTGAGATGATGGAGTGTTTTGAGAGCACGAAGGGCGTGACA
AGGAAGAATAAGAAAAAATATATTTTAGGCATTTCGAATTCAAATAGAAA
GGGAGGGAGGGGTGGAATTTTCAAGGTCAAACACCCTCGTTAAAAAAAAG
TAATAAATTGGCATTCTAGGTAGACGGAGG

Coding sequence (CDS) from alignment at scaffold_21:57336..58965+

>mRNA_7678 ID=mRNA_7678|Name=jgi.p|Nanoce1779_2|599634|organism=Nannochloropsis oceanica|type=CDS|length=1992bp|location=Sequence derived from alignment at scaffold_21:57336..58965+ (Nannochloropsis oceanica)
ATGGTCCCGCGGGGAGGGCCACGTGGCGGCAAGAGCAGCCACCACTCCAT
CGCTCGCCTGGTCGGCTCCAGCAGCAGTGCCCTCTTCGAACTCCTGATCT
TCCAACCCCTCGACACCTGCTGCAAGCGCATCATCACTTATCAAGGCCGT
TTGTTGACTGCGGAGGGCTTGTCTCTTTCTGATAAGTACGGAAAGATACG
GAGCGTCGTCTTCCGCGATAAACTCAACTCGGGTCCTTTTGACAAGCTCC
GTTCCCTTTATGTTGGCCTCAAGTTCGGTGCTAGCTACAAGATATGTCAA
CGCACTGCTGCATACGGCCTGCAACCCTTCCTGTTTGATCATATCCATGC
CACTTACCACGACAGCTTCATATCTCTTGCGGGCCCAAAACGAGCCCGCT
CCGTTGAATTTGCCACCGCTGCCGCCATAATGGGCACGGTCGAAGTTGTC
TTCATCCCCCTAGATACCCTCAAAATAATTGCGCAAACCAACGCTTCCTC
CCTACGTGGACGATCTTTCCTTCAAATAGTCGAACAAGAGGGCTTTCGAC
TTTACAGAGGGGCCTCTTGGACCGTTCTAAGAAATTTCCCGGGTTCCTTT
GCCTTGTTCGGTGGATCTGCGTTGATAAAAGAAAAGGCATTTCATCTAGA
GAATTATAAGGATGCAACGCTATTGCAAGAGCTAATAGCGAGCACGACGG
GAGCAGTGTGGTCCTTGACGGTTTCCAGTCCGGCGGACGTGATCAAGGCC
AGGGTGCAGAGGGCGAGTCTGTCGCCATCGGGGGAGGTGATGAAAGGACG
GCAGATTCTGAGGGACCTGTTGAGGAAGGAAGGGCCCTGGGCGTTGTTTA
AGGGCTTGAATACAAAGTTCATGGTGGTGTGCCCTAAGCTGGTGATGTCC
TTCACGGTCTACAACCAGGTGATGAGCTGGCTCGACAATTGGGTGGAGAG
CAATATAGAGAAAAACAAGAAGAAAGGTAATTTAATAAAAAGCTGAATGG
TCCCGCGGGGAGGGCCACGTGGCGGCAAGAGCAGCCACCACTCCATCGCT
CGCCTGGTCGGCTCCAGCAGCAGTGCCCTCTTCGAACTCCTGATCTTCCA
ACCCCTCGACACCTGCTGCAAGCGCATCATCACTTATCAAGGCCGTTTGT
TGACTGCGGAGGGCTTGTCTCTTTCTGATAAGTACGGAAAGATACGGAGC
GTCGTCTTCCGCGATAAACTCAACTCGGGTCCTTTTGACAAGCTCCGTTC
CCTTTATGTTGGCCTCAAGTTCGGTGCTAGCTACAAGATATGTCAACGCA
CTGCTGCATACGGCCTGCAACCCTTCCTGTTTGATCATATCCATGCCACT
TACCACGACAGCTTCATATCTCTTGCGGGCCCAAAACGAGCCCGCTCCGT
TGAATTTGCCACCGCTGCCGCCATAATGGGCACGGTCGAAGTTGTCTTCA
TCCCCCTAGATACCCTCAAAATAATTGCGCAAACCAACGCTTCCTCCCTA
CGTGGACGATCTTTCCTTCAAATAGTCGAACAAGAGGGCTTTCGACTTTA
CAGAGGGGCCTCTTGGACCGTTCTAAGAAATTTCCCGGGTTCCTTTGCCT
TGTTCGGTGGATCTGCGTTGATAAAAGAAAAGGCATTTCATCTAGAGAAT
TATAAGGATGCAACGCTATTGCAAGAGCTAATAGCGAGCACGACGGGAGC
AGTGTGGTCCTTGACGGTTTCCAGTCCGGCGGACGTGATCAAGGCCAGGG
TGCAGAGGGCGAGTCTGTCGCCATCGGGGGAGGTGATGAAAGGACGGCAG
ATTCTGAGGGACCTGTTGAGGAAGGAAGGGCCCTGGGCGTTGTTTAAGGG
CTTGAATACAAAGTTCATGGTGGTGTGCCCTAAGCTGGTGATGTCCTTCA
CGGTCTACAACCAGGTGATGAGCTGGCTCGACAATTGGGTGGAGAGCAAT
ATAGAGAAAAACAAGAAGAAAGGTAATTTAATAAAAAGCTGA

Synonyms

Publications