jgi.p|Nanoce1779_2|599626, mRNA_7676 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599626
Unique NamemRNA_7676
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1535
Alignment locationscaffold_21:49207..50741 -

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Properties
Property NameValue
TranscriptId599712
TrackFilteredModels2
ProteinId599626
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:49207..50741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599626gene_7676Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599626mRNA_7676-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7676CDS_7676Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7676 ID=mRNA_7676|Name=jgi.p|Nanoce1779_2|599626|organism=Nannochloropsis oceanica|type=mRNA|length=1535bp
CAGGCTCCCTGTCGCCTCCTGTGCCCTAAATCCTGGCCACCACTCGACCC
TTTCGGCGTCTCCAGTTAGTCGCCAGGCATTTTTCTACATCTTTCCGCGC
TGCGCCTTCCCGCATTCCTTGTATCCCTCCGTCCAAAATGAGCACTCCCC
TCGTCGTCGGCTTGGTGGGTGGGGGCACCGTCGGCGGCGGCGTCTACGAC
ATTGTGGAGTACACACACCAAGAGTTCTTTCGCTCCTTGGGTGCAAACAT
CCATATCAAGAAGATCGCAGTCAAGAATCTGAAGAAGCCCCGTGATTTTG
CTGTGGCTGCCCACACGAACCTCGTGGGGGACTGGCGCCAAGTCTTGGAC
GATCCCGATATTAATACCGTCGTGGAAGTCATGGGCGGTATAACCGAAGC
AAAGGAAGTCGTCTTTGGGGCCATTGCTAAGGGGAAGCACGTCGTGACGG
CAAATAAGGCTTTGCTCGCCGCTTACCTGCCCGAGATCGTCGCGCTGCTC
AAGGAGCACCCGGAGGTGAAATTTGGGTATGAGGCTGCAGTCTGTGGAGG
CATCCCCATCATCCACACCCTCCAAAACGACTACCTTGGCGACCAAATCT
CCCAAATTCTGGGCATCATGAACGGGACCACAAACTTCATGTTGACCAAA
ATGGAGGGGGGGGCGGAGTACGGCGAGGTGCTGGCGGAGGCGCAGGCGCT
CGGGTTCGCCGAAGCGGATCCGACGGCAGACGTGGAAGGGCATGACGTCC
AAGCGAAGATCGCCTTGCTGGCCAAACTGGCCTTTGGGGTGCATGTCCCC
TTCGATGAAATTCCGACTACGGGGATCTCATCGATTGAGTCGGTGGACTT
TGAATACGCCAAGCTCCTGAACGCCACGATTAAACTGCTGGGGATGGCGC
AACTATCCCCCGATGGGGCCAAGCTTTCTGTGGCTGTCTCCCCTTTTATT
GTACCCAGGGACCATGCCATAGCCGCGGCGAATGGCTCGACGAACATCGT
GAACATATCCTCGAGGAACCTGGTGTCATCTGCGTACATTGGACCGGGGG
CAGGGAGGTATCCTACTGCCAACAGTATCGTGAGCGACATCGTCCGTCTT
GCCCGTGGTTTGGTCGGACCTCCTTTTCCCGTGGATCGTGCCATGCCGCT
AGAGCCTGATTACACCTCGAGGTTCTATATCCGTCTGCGGATCCAGGATC
AATTGGGGGTAATTCGCGTAGTGGGAGAGATTGCGGAGCGGCATGGTGTG
TCGATCTATGCTATCCTTCAAAACCCCATTACGGACCCCAATGATATTAA
TTTTGTGGTTACCACCGAGCCGGCGAGGCATTCACAGGTCAGGGCGTTTT
CGGAGGATATCGAAAAGCAGGATTTCACCAAGGGTCCGCCGTTGTTCTTC
GCGTTTTTGCTTTCGTAAAATGGGTTTGGTTGGGTTGAAGGGAGTAGTAA
GGGAGATCTAGAGAGAGGGTGAGAGGACGATGAAATATGGTAAGAAAGGA
TTGGTATAATGAAAGAAAGAAATTGAGCAGTTTTG
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protein sequence of jgi.p|Nanoce1779_2|599626

>mRNA_7676-protein ID=mRNA_7676-protein|Name=jgi.p|Nanoce1779_2|599626|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MSTPLVVGLVGGGTVGGGVYDIVEYTHQEFFRSLGANIHIKKIAVKNLKK
PRDFAVAAHTNLVGDWRQVLDDPDINTVVEVMGGITEAKEVVFGAIAKGK
HVVTANKALLAAYLPEIVALLKEHPEVKFGYEAAVCGGIPIIHTLQNDYL
GDQISQILGIMNGTTNFMLTKMEGGAEYGEVLAEAQALGFAEADPTADVE
GHDVQAKIALLAKLAFGVHVPFDEIPTTGISSIESVDFEYAKLLNATIKL
LGMAQLSPDGAKLSVAVSPFIVPRDHAIAAANGSTNIVNISSRNLVSSAY
IGPGAGRYPTANSIVSDIVRLARGLVGPPFPVDRAMPLEPDYTSRFYIRL
RIQDQLGVIRVVGEIAERHGVSIYAILQNPITDPNDINFVVTTEPARHSQ
VRAFSEDIEKQDFTKGPPLFFAFLLS*
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mRNA from alignment at scaffold_21:49207..50741-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7676 ID=mRNA_7676|Name=jgi.p|Nanoce1779_2|599626|organism=Nannochloropsis oceanica|type=mRNA|length=1535bp|location=Sequence derived from alignment at scaffold_21:49207..50741- (Nannochloropsis oceanica)
CAGGCTCCCTGTCGCCTCCTGTGCCCTAAATCCTGGCCACCACTCGACCC
TTTCGGCGTCTCCAGTTAGTCGCCAGGCATTTTTCTACATCTTTCCGCGC
TGCGCCTTCCCGCATTCCTTGTATCCCTCCGTCCAAAATGAGCACTCCCC
TCGTCGTCGGCTTGGTGGGTGGGGGCACCGTCGGCGGCGGCGTCTACGAC
ATTGTGGAGTACACACACCAAGAGTTCTTTCGCTCCTTGGGTGCAAACAT
CCATATCAAGAAGATCGCAGTCAAGAATCTGAAGAAGCCCCGTGATTTTG
CTGTGGCTGCCCACACGAACCTCGTGGGGGACTGGCGCCAAGTCTTGGAC
GATCCCGATATTAATACCGTCGTGGAAGTCATGGGCGGTATAACCGAAGC
AAAGGAAGTCGTCTTTGGGGCCATTGCTAAGGGGAAGCACGTCGTGACGG
CAAATAAGGCTTTGCTCGCCGCTTACCTGCCCGAGATCGTCGCGCTGCTC
AAGGAGCACCCGGAGGTGAAATTTGGGTATGAGGCTGCAGTCTGTGGAGG
CATCCCCATCATCCACACCCTCCAAAACGACTACCTTGGCGACCAAATCT
CCCAAATTCTGGGCATCATGAACGGGACCACAAACTTCATGTTGACCAAA
ATGGAGGGGGGGGCGGAGTACGGCGAGGTGCTGGCGGAGGCGCAGGCGCT
CGGGTTCGCCGAAGCGGATCCGACGGCAGACGTGGAAGGGCATGACGTCC
AAGCGAAGATCGCCTTGCTGGCCAAACTGGCCTTTGGGGTGCATGTCCCC
TTCGATGAAATTCCGACTACGGGGATCTCATCGATTGAGTCGGTGGACTT
TGAATACGCCAAGCTCCTGAACGCCACGATTAAACTGCTGGGGATGGCGC
AACTATCCCCCGATGGGGCCAAGCTTTCTGTGGCTGTCTCCCCTTTTATT
GTACCCAGGGACCATGCCATAGCCGCGGCGAATGGCTCGACGAACATCGT
GAACATATCCTCGAGGAACCTGGTGTCATCTGCGTACATTGGACCGGGGG
CAGGGAGGTATCCTACTGCCAACAGTATCGTGAGCGACATCGTCCGTCTT
GCCCGTGGTTTGGTCGGACCTCCTTTTCCCGTGGATCGTGCCATGCCGCT
AGAGCCTGATTACACCTCGAGGTTCTATATCCGTCTGCGGATCCAGGATC
AATTGGGGGTAATTCGCGTAGTGGGAGAGATTGCGGAGCGGCATGGTGTG
TCGATCTATGCTATCCTTCAAAACCCCATTACGGACCCCAATGATATTAA
TTTTGTGGTTACCACCGAGCCGGCGAGGCATTCACAGGTCAGGGCGTTTT
CGGAGGATATCGAAAAGCAGGATTTCACCAAGGGTCCGCCGTTGTTCTTC
GCGTTTTTGCTTTCGTAAAATGGGTTTGGTTGGGTTGAAGGGAGTAGTAA
GGGAGATCTAGAGAGAGGGTGAGAGGACGATGAAATATGGTAAGAAAGGA
TTGGTATAATGAAAGAAAGAAATTGAGCAGTTTTG
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Coding sequence (CDS) from alignment at scaffold_21:49207..50741-

>mRNA_7676 ID=mRNA_7676|Name=jgi.p|Nanoce1779_2|599626|organism=Nannochloropsis oceanica|type=CDS|length=1281bp|location=Sequence derived from alignment at scaffold_21:49207..50741- (Nannochloropsis oceanica)
ATGAGCACTCCCCTCGTCGTCGGCTTGGTGGGTGGGGGCACCGTCGGCGG
CGGCGTCTACGACATTGTGGAGTACACACACCAAGAGTTCTTTCGCTCCT
TGGGTGCAAACATCCATATCAAGAAGATCGCAGTCAAGAATCTGAAGAAG
CCCCGTGATTTTGCTGTGGCTGCCCACACGAACCTCGTGGGGGACTGGCG
CCAAGTCTTGGACGATCCCGATATTAATACCGTCGTGGAAGTCATGGGCG
GTATAACCGAAGCAAAGGAAGTCGTCTTTGGGGCCATTGCTAAGGGGAAG
CACGTCGTGACGGCAAATAAGGCTTTGCTCGCCGCTTACCTGCCCGAGAT
CGTCGCGCTGCTCAAGGAGCACCCGGAGGTGAAATTTGGGTATGAGGCTG
CAGTCTGTGGAGGCATCCCCATCATCCACACCCTCCAAAACGACTACCTT
GGCGACCAAATCTCCCAAATTCTGGGCATCATGAACGGGACCACAAACTT
CATGTTGACCAAAATGGAGGGGGGGGCGGAGTACGGCGAGGTGCTGGCGG
AGGCGCAGGCGCTCGGGTTCGCCGAAGCGGATCCGACGGCAGACGTGGAA
GGGCATGACGTCCAAGCGAAGATCGCCTTGCTGGCCAAACTGGCCTTTGG
GGTGCATGTCCCCTTCGATGAAATTCCGACTACGGGGATCTCATCGATTG
AGTCGGTGGACTTTGAATACGCCAAGCTCCTGAACGCCACGATTAAACTG
CTGGGGATGGCGCAACTATCCCCCGATGGGGCCAAGCTTTCTGTGGCTGT
CTCCCCTTTTATTGTACCCAGGGACCATGCCATAGCCGCGGCGAATGGCT
CGACGAACATCGTGAACATATCCTCGAGGAACCTGGTGTCATCTGCGTAC
ATTGGACCGGGGGCAGGGAGGTATCCTACTGCCAACAGTATCGTGAGCGA
CATCGTCCGTCTTGCCCGTGGTTTGGTCGGACCTCCTTTTCCCGTGGATC
GTGCCATGCCGCTAGAGCCTGATTACACCTCGAGGTTCTATATCCGTCTG
CGGATCCAGGATCAATTGGGGGTAATTCGCGTAGTGGGAGAGATTGCGGA
GCGGCATGGTGTGTCGATCTATGCTATCCTTCAAAACCCCATTACGGACC
CCAATGATATTAATTTTGTGGTTACCACCGAGCCGGCGAGGCATTCACAG
GTCAGGGCGTTTTCGGAGGATATCGAAAAGCAGGATTTCACCAAGGGTCC
GCCGTTGTTCTTCGCGTTTTTGCTTTCGTAA
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Synonyms
Publications