jgi.p|Nanoce1779_2|165776, mRNA_7674 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|165776
Unique NamemRNA_7674
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2205
Alignment locationscaffold_21:43765..45969 +

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Properties
Property NameValue
TranscriptId165862
TrackFilteredModels2
ProteinId165776
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:43765..45969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|165776gene_7674Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|165776mRNA_7674-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7674CDS_7674Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7674 ID=mRNA_7674|Name=jgi.p|Nanoce1779_2|165776|organism=Nannochloropsis oceanica|type=mRNA|length=2205bp
AACCATAAGAACAGGGAGCATTGATTCATGCCAAGATGTCATCAGAAATG
TTTCCTGGCCGTCATCGTTACATCAGCGCAAGGCCGTCACTAATCCTCTG
TCTCATTACGCTCGTCTCCTTCCCAATGACCGCAAGCACCTCGCTGTTCA
TCCCCACTACTGTAAGCGCCATGGTTTTGCTGCAGCGGCCTTTCTCCCTC
CAAAGTATGTGTCTCGCACGAAAACTGTCTCTGTCACCCACTCCTTTTTC
AAACACCATGCTTTTCAATCGTTGTGGCGGCGGCATCAGTAGCAGCAGCC
CCAATCTGGCGGCGTCTTCTCGCTCGTCCAACACCCGCCTCTACAGCAGT
GCCTCAGCCCCCGTACCCCTCTCCTCCCCCCCTCCTGCTTCCTCTTCAAC
CTCTACCCCGTCTATCTGCGGGTCTGCCTCTGAAATCATTCTCTCAGACG
GGCGTGCCCTTACACTTAACTTCCGACCCCGCTCATGGTTTAGCCGCTTG
TTTGCCTACAGTACAGCTGCGTTGCTCGCGGTGGGTCGACGGAAGTTTTT
GCCGTTCTCCCCTAAATTCAGGTGGCATTTCAAGGCCTTAGAAAAGGTAG
CACATCCTCGTCTTGCCGGAGGGTTGTTCATGGTGCTATTCGTATTGATG
GAAGCGTATGTGTACATGATTCCATTGAGACAAGTGCAGTTACAGAGCTT
CTTTCTACCCGAGGTGGTGCCGGCGGAGAAGTTGGGACTACCCGCATCAC
GCTTTATGCCGGTTTTGAGGAGGGAAAAGAGGAACAGTAGCGTTGGACGT
CTTACACCTGCTGCTGCTTCTGATGCTGCCGCTTCCTCCACCTCCGCATT
TGCCTCTCCTTTCGCCCAATCTACTGCTCCTGCTTCGAAACCCAGCCAAA
CAAGCCACCTCAAACTCCACGCCCTCGTCCATCGTCATCGGCCCTCCCTC
CCCCCATCTTCCTCTCCAACCAATATTTTTTTTGTCCATTGCAACCATGG
TTTTGGCGCCAATTCTCTCTCATACGAGCCTGTCCTCGAGTCCCTCTCTT
CTACTCTCGGTCAACAATTTCCTACTCTTGCTGCTGCCCACGACGCGCCT
GGTTTCGGTCTTAGTGAGTCACCAGCGGAGATGGAGGACGGGGGAGGACA
AGAGGAAGAAGGGTTATATTCATTCGAAAACAATGCGAGGTTAGGAGGGA
GGTTGATGGCGGCGTTGGGGGAGGAGGGAGGGAGGGAGGAAAGGGGGGAG
GAGCAGCATGTCTACATAGGGCATTCAATGGGTAGTCTAACTTCCGCACA
CATGGCCTTGAACAAACTCGAGAGCCAAGACGAAGAGGCCAGAGGGAGGG
AGGAATCATTGGAAAAAGGGCGAGGTACTCCTTCTCCCCCTCCTCCACCA
GTAATCCTCATCTTGGTGGCCCCGGCCATCATGCCAATGCGTCGTTCTCC
CTCCCGTCTTCCCCCCACCGGGCAGACCTTCCTCCCTCGGCTCTTCCCTG
CGCGTCTCCTCCGATTCATCTTCTCCAAAACTGGCCCTGTGGCCCACTCC
CTCCTCCTCGTCCTCACCTCTTTCTTTCTTCGTTCCCTCTGTTATTCCGA
GAAGTTTTGGAGGGATGGGTTAGGAGTGGCGTGGGGGGTGGGAGGGCCTC
CCACCTCCTTGACTCTGGCTCACTATCGACTGCCAAGCCTGAAGGAGGGG
TGGGAGAGGGGATTGAGTCGCTTTCTGCTTGCCCCGCTATTCGCTGGAAG
GAGGAATGGAGGGAGAGAAGGAGGAAAGGAAGGGGAGGAAAGAGGGTTGG
TAAAGGCGCTGGCGGAGAGGGTGAGGGAGGGGAGATTAAAGGTTTTGATT
ATACATGGCACGAAGGACCGAGTGGTTGCCATGGAGAATAGCAGGAGGCT
GGCCATTGCGATGAAGGAGGGAGGGAAGGGAGTGGTGGAGGTGGTGGAGA
TCGAGGGGGTGGGGCACGTGCCGCATGAAGAGGTGCCGGGTCGCTTTGTA
GAGACAGTGGTGGAATTTGTGAAGAGGGGGAGGTAGAGGGCAGCAGGTAG
CGGGTAAGGAAGAAGGGAATGTTGAAAAAATGAGAACCGATAATCGATAA
AGGACGGAGGTAAACGTGAATTGTAGACAGAACGGGATGAGGCAGAGAGA
AGATGAATTTCGGAGTATCATCGAATATATGTCATCGGGCAATTTGACGT
TGTGC
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protein sequence of jgi.p|Nanoce1779_2|165776

>mRNA_7674-protein ID=mRNA_7674-protein|Name=jgi.p|Nanoce1779_2|165776|organism=Nannochloropsis oceanica|type=polypeptide|length=667bp
MSSEMFPGRHRYISARPSLILCLITLVSFPMTASTSLFIPTTVSAMVLLQ
RPFSLQSMCLARKLSLSPTPFSNTMLFNRCGGGISSSSPNLAASSRSSNT
RLYSSASAPVPLSSPPPASSSTSTPSICGSASEIILSDGRALTLNFRPRS
WFSRLFAYSTAALLAVGRRKFLPFSPKFRWHFKALEKVAHPRLAGGLFMV
LFVLMEAYVYMIPLRQVQLQSFFLPEVVPAEKLGLPASRFMPVLRREKRN
SSVGRLTPAAASDAAASSTSAFASPFAQSTAPASKPSQTSHLKLHALVHR
HRPSLPPSSSPTNIFFVHCNHGFGANSLSYEPVLESLSSTLGQQFPTLAA
AHDAPGFGLSESPAEMEDGGGQEEEGLYSFENNARLGGRLMAALGEEGGR
EERGEEQHVYIGHSMGSLTSAHMALNKLESQDEEARGREESLEKGRGTPS
PPPPPVILILVAPAIMPMRRSPSRLPPTGQTFLPRLFPARLLRFIFSKTG
PVAHSLLLVLTSFFLRSLCYSEKFWRDGLGVAWGVGGPPTSLTLAHYRLP
SLKEGWERGLSRFLLAPLFAGRRNGGREGGKEGEERGLVKALAERVREGR
LKVLIIHGTKDRVVAMENSRRLAIAMKEGGKGVVEVVEIEGVGHVPHEEV
PGRFVETVVEFVKRGR*
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mRNA from alignment at scaffold_21:43765..45969+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7674 ID=mRNA_7674|Name=jgi.p|Nanoce1779_2|165776|organism=Nannochloropsis oceanica|type=mRNA|length=2205bp|location=Sequence derived from alignment at scaffold_21:43765..45969+ (Nannochloropsis oceanica)
AACCATAAGAACAGGGAGCATTGATTCATGCCAAGATGTCATCAGAAATG
TTTCCTGGCCGTCATCGTTACATCAGCGCAAGGCCGTCACTAATCCTCTG
TCTCATTACGCTCGTCTCCTTCCCAATGACCGCAAGCACCTCGCTGTTCA
TCCCCACTACTGTAAGCGCCATGGTTTTGCTGCAGCGGCCTTTCTCCCTC
CAAAGTATGTGTCTCGCACGAAAACTGTCTCTGTCACCCACTCCTTTTTC
AAACACCATGCTTTTCAATCGTTGTGGCGGCGGCATCAGTAGCAGCAGCC
CCAATCTGGCGGCGTCTTCTCGCTCGTCCAACACCCGCCTCTACAGCAGT
GCCTCAGCCCCCGTACCCCTCTCCTCCCCCCCTCCTGCTTCCTCTTCAAC
CTCTACCCCGTCTATCTGCGGGTCTGCCTCTGAAATCATTCTCTCAGACG
GGCGTGCCCTTACACTTAACTTCCGACCCCGCTCATGGTTTAGCCGCTTG
TTTGCCTACAGTACAGCTGCGTTGCTCGCGGTGGGTCGACGGAAGTTTTT
GCCGTTCTCCCCTAAATTCAGGTGGCATTTCAAGGCCTTAGAAAAGGTAG
CACATCCTCGTCTTGCCGGAGGGTTGTTCATGGTGCTATTCGTATTGATG
GAAGCGTATGTGTACATGATTCCATTGAGACAAGTGCAGTTACAGAGCTT
CTTTCTACCCGAGGTGGTGCCGGCGGAGAAGTTGGGACTACCCGCATCAC
GCTTTATGCCGGTTTTGAGGAGGGAAAAGAGGAACAGTAGCGTTGGACGT
CTTACACCTGCTGCTGCTTCTGATGCTGCCGCTTCCTCCACCTCCGCATT
TGCCTCTCCTTTCGCCCAATCTACTGCTCCTGCTTCGAAACCCAGCCAAA
CAAGCCACCTCAAACTCCACGCCCTCGTCCATCGTCATCGGCCCTCCCTC
CCCCCATCTTCCTCTCCAACCAATATTTTTTTTGTCCATTGCAACCATGG
TTTTGGCGCCAATTCTCTCTCATACGAGCCTGTCCTCGAGTCCCTCTCTT
CTACTCTCGGTCAACAATTTCCTACTCTTGCTGCTGCCCACGACGCGCCT
GGTTTCGGTCTTAGTGAGTCACCAGCGGAGATGGAGGACGGGGGAGGACA
AGAGGAAGAAGGGTTATATTCATTCGAAAACAATGCGAGGTTAGGAGGGA
GGTTGATGGCGGCGTTGGGGGAGGAGGGAGGGAGGGAGGAAAGGGGGGAG
GAGCAGCATGTCTACATAGGGCATTCAATGGGTAGTCTAACTTCCGCACA
CATGGCCTTGAACAAACTCGAGAGCCAAGACGAAGAGGCCAGAGGGAGGG
AGGAATCATTGGAAAAAGGGCGAGGTACTCCTTCTCCCCCTCCTCCACCA
GTAATCCTCATCTTGGTGGCCCCGGCCATCATGCCAATGCGTCGTTCTCC
CTCCCGTCTTCCCCCCACCGGGCAGACCTTCCTCCCTCGGCTCTTCCCTG
CGCGTCTCCTCCGATTCATCTTCTCCAAAACTGGCCCTGTGGCCCACTCC
CTCCTCCTCGTCCTCACCTCTTTCTTTCTTCGTTCCCTCTGTTATTCCGA
GAAGTTTTGGAGGGATGGGTTAGGAGTGGCGTGGGGGGTGGGAGGGCCTC
CCACCTCCTTGACTCTGGCTCACTATCGACTGCCAAGCCTGAAGGAGGGG
TGGGAGAGGGGATTGAGTCGCTTTCTGCTTGCCCCGCTATTCGCTGGAAG
GAGGAATGGAGGGAGAGAAGGAGGAAAGGAAGGGGAGGAAAGAGGGTTGG
TAAAGGCGCTGGCGGAGAGGGTGAGGGAGGGGAGATTAAAGGTTTTGATT
ATACATGGCACGAAGGACCGAGTGGTTGCCATGGAGAATAGCAGGAGGCT
GGCCATTGCGATGAAGGAGGGAGGGAAGGGAGTGGTGGAGGTGGTGGAGA
TCGAGGGGGTGGGGCACGTGCCGCATGAAGAGGTGCCGGGTCGCTTTGTA
GAGACAGTGGTGGAATTTGTGAAGAGGGGGAGGTAGAGGGCAGCAGGTAG
CGGGTAAGGAAGAAGGGAATGTTGAAAAAATGAGAACCGATAATCGATAA
AGGACGGAGGTAAACGTGAATTGTAGACAGAACGGGATGAGGCAGAGAGA
AGATGAATTTCGGAGTATCATCGAATATATGTCATCGGGCAATTTGACGT
TGTGC
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Coding sequence (CDS) from alignment at scaffold_21:43765..45969+

>mRNA_7674 ID=mRNA_7674|Name=jgi.p|Nanoce1779_2|165776|organism=Nannochloropsis oceanica|type=CDS|length=2001bp|location=Sequence derived from alignment at scaffold_21:43765..45969+ (Nannochloropsis oceanica)
ATGTCATCAGAAATGTTTCCTGGCCGTCATCGTTACATCAGCGCAAGGCC
GTCACTAATCCTCTGTCTCATTACGCTCGTCTCCTTCCCAATGACCGCAA
GCACCTCGCTGTTCATCCCCACTACTGTAAGCGCCATGGTTTTGCTGCAG
CGGCCTTTCTCCCTCCAAAGTATGTGTCTCGCACGAAAACTGTCTCTGTC
ACCCACTCCTTTTTCAAACACCATGCTTTTCAATCGTTGTGGCGGCGGCA
TCAGTAGCAGCAGCCCCAATCTGGCGGCGTCTTCTCGCTCGTCCAACACC
CGCCTCTACAGCAGTGCCTCAGCCCCCGTACCCCTCTCCTCCCCCCCTCC
TGCTTCCTCTTCAACCTCTACCCCGTCTATCTGCGGGTCTGCCTCTGAAA
TCATTCTCTCAGACGGGCGTGCCCTTACACTTAACTTCCGACCCCGCTCA
TGGTTTAGCCGCTTGTTTGCCTACAGTACAGCTGCGTTGCTCGCGGTGGG
TCGACGGAAGTTTTTGCCGTTCTCCCCTAAATTCAGGTGGCATTTCAAGG
CCTTAGAAAAGGTAGCACATCCTCGTCTTGCCGGAGGGTTGTTCATGGTG
CTATTCGTATTGATGGAAGCGTATGTGTACATGATTCCATTGAGACAAGT
GCAGTTACAGAGCTTCTTTCTACCCGAGGTGGTGCCGGCGGAGAAGTTGG
GACTACCCGCATCACGCTTTATGCCGGTTTTGAGGAGGGAAAAGAGGAAC
AGTAGCGTTGGACGTCTTACACCTGCTGCTGCTTCTGATGCTGCCGCTTC
CTCCACCTCCGCATTTGCCTCTCCTTTCGCCCAATCTACTGCTCCTGCTT
CGAAACCCAGCCAAACAAGCCACCTCAAACTCCACGCCCTCGTCCATCGT
CATCGGCCCTCCCTCCCCCCATCTTCCTCTCCAACCAATATTTTTTTTGT
CCATTGCAACCATGGTTTTGGCGCCAATTCTCTCTCATACGAGCCTGTCC
TCGAGTCCCTCTCTTCTACTCTCGGTCAACAATTTCCTACTCTTGCTGCT
GCCCACGACGCGCCTGGTTTCGGTCTTAGTGAGTCACCAGCGGAGATGGA
GGACGGGGGAGGACAAGAGGAAGAAGGGTTATATTCATTCGAAAACAATG
CGAGGTTAGGAGGGAGGTTGATGGCGGCGTTGGGGGAGGAGGGAGGGAGG
GAGGAAAGGGGGGAGGAGCAGCATGTCTACATAGGGCATTCAATGGGTAG
TCTAACTTCCGCACACATGGCCTTGAACAAACTCGAGAGCCAAGACGAAG
AGGCCAGAGGGAGGGAGGAATCATTGGAAAAAGGGCGAGGTACTCCTTCT
CCCCCTCCTCCACCAGTAATCCTCATCTTGGTGGCCCCGGCCATCATGCC
AATGCGTCGTTCTCCCTCCCGTCTTCCCCCCACCGGGCAGACCTTCCTCC
CTCGGCTCTTCCCTGCGCGTCTCCTCCGATTCATCTTCTCCAAAACTGGC
CCTGTGGCCCACTCCCTCCTCCTCGTCCTCACCTCTTTCTTTCTTCGTTC
CCTCTGTTATTCCGAGAAGTTTTGGAGGGATGGGTTAGGAGTGGCGTGGG
GGGTGGGAGGGCCTCCCACCTCCTTGACTCTGGCTCACTATCGACTGCCA
AGCCTGAAGGAGGGGTGGGAGAGGGGATTGAGTCGCTTTCTGCTTGCCCC
GCTATTCGCTGGAAGGAGGAATGGAGGGAGAGAAGGAGGAAAGGAAGGGG
AGGAAAGAGGGTTGGTAAAGGCGCTGGCGGAGAGGGTGAGGGAGGGGAGA
TTAAAGGTTTTGATTATACATGGCACGAAGGACCGAGTGGTTGCCATGGA
GAATAGCAGGAGGCTGGCCATTGCGATGAAGGAGGGAGGGAAGGGAGTGG
TGGAGGTGGTGGAGATCGAGGGGGTGGGGCACGTGCCGCATGAAGAGGTG
CCGGGTCGCTTTGTAGAGACAGTGGTGGAATTTGTGAAGAGGGGGAGGTA
G
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Synonyms
Publications