jgi.p|Nanoce1779_2|599613, mRNA_7672 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599613
Unique NamemRNA_7672
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1151
Alignment locationscaffold_21:39333..40771 -

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Properties
Property NameValue
TranscriptId599699
TrackFilteredModels2
ProteinId599613
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:39333..40771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599613gene_7672Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599613mRNA_7672-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7672CDS_7672Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7672 ID=mRNA_7672|Name=jgi.p|Nanoce1779_2|599613|organism=Nannochloropsis oceanica|type=mRNA|length=1151bp
ACAGGCATCTTTTCAAGCTTGTCCTCAAGTCGTCGGTGGTGCTGAATCGT
CCAGCCAGGTCGGAAGCCTTCTGTCGCCCCTTCACAAAACACGTCCCCCA
GCCTACCCCTCCATGGCGCCGCGCTCGACATGTAGCGTCCTCCTGGCCGC
CTATTTTATATGCCGTGCAGTCACCCAGGCATTCGTCCACCTTCCTGCTC
CCCCCCCCTTATCTCCTGCCACTGCTGCTGCGGCTGCTGTACGTAGCCAC
CACGCCTACCGACACGCGACCATGCGCCTCTTTATGACGGCTGCGGCCAA
TCACAACAATCCACTAAGTCTCGAGGAGATTTCCCAGAAAATCAAATTTG
AAGTCACAGATTTGGACGCAGGGGCCTATGGGCTGGAGAGCAAGGACGTG
GCTTATGCAGTGGAAATTGCCAAGGTCAAAATCCCCCTTCCTGAAGGGAC
CGGGTTAGGACTGGGCTTGGAAGAACTCAAACGCGGGCGTGACGGACGTG
GATGTGTATTGATTTCCGCCATCCAACCGGGGGGGAATGCCGAAAAGGCT
GCAGGCGAAGAGCAGAAGATACGTGTGGGGGACATGATTTGTTACCTGGG
ACGAGAGCCAAACGGGATGGTACGCACAGAGGGGTTGGATTTTGAGCAGA
CCATGGAGGCACTACGTACATATATCCAAAGTAACGACGCCACTTCCATC
ACCCTCGTTCTTAAGAGACTCGTCTTTCGCGAGTCCGTCGATATCTCGCT
GTCTTACACCCCCTCCCCAGAGGAAACAGAGAAATCGGGCACCGAACCCT
GGACGCAATCGCTGTCCATGCTATGTGGCTCACAATTGAGGAAGGAGCTG
TTGCGCTCCGGCTTGCCTGTGTATGATAAGAACACGCTCCGGTTCGATCA
GCCCTACGTGACGGGGGACTGTGGCGGGGAGGGAATCTGCGGGACGTGTC
TCGTGCAGGTGCTAGAAGGAAAGGAGCTGTTGAATGAACCGGATGCGATC
GAGGAGATGGTAATTCGGAAGTGGGGGGCGGCGAATTGGAGGTTGTCGTG
TCGGGTGGTGGTAGGGGCAACAAATACTCCGGGTACAGTGAGGTTTCGAT
TGATGCCTCAGGCGCCGTTTATTAGGAAGAGGTGAAGGAGGGGGGGGAAG
G
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protein sequence of jgi.p|Nanoce1779_2|599613

>mRNA_7672-protein ID=mRNA_7672-protein|Name=jgi.p|Nanoce1779_2|599613|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MAPRSTCSVLLAAYFICRAVTQAFVHLPAPPPLSPATAAAAAVRSHHAYR
HATMRLFMTAAANHNNPLSLEEISQKIKFEVTDLDAGAYGLESKDVAYAV
EIAKVKIPLPEGTGLGLGLEELKRGRDGRGCVLISAIQPGGNAEKAAGEE
QKIRVGDMICYLGREPNGMVRTEGLDFEQTMEALRTYIQSNDATSITLVL
KRLVFRESVDISLSYTPSPEETEKSGTEPWTQSLSMLCGSQLRKELLRSG
LPVYDKNTLRFDQPYVTGDCGGEGICGTCLVQVLEGKELLNEPDAIEEMV
IRKWGAANWRLSCRVVVGATNTPGTVRFRLMPQAPFIRKR*
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mRNA from alignment at scaffold_21:39333..40771-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7672 ID=mRNA_7672|Name=jgi.p|Nanoce1779_2|599613|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp|location=Sequence derived from alignment at scaffold_21:39333..40771- (Nannochloropsis oceanica)
ACAGGCATCTTTTCAAGCTTGTCCTCAAGTCGTCGGTGGTGCTGAATCGT
CCAGCCAGGTCGGAAGCCTTCTGTCGCCCCTTCACAAAACACGTCCCCCA
GCCTACCCCTCCATGGCGCCGCGCTCGACATGTAGCGTCCTCCTGGCCGC
CTATTTTATATGCCGTGCAGTCACCCAGGCATTCGTCCACCTTCCTGCTC
CCCCCCCCTTATCTCCTGCCACTGCTGCTGCGGCTGCTGTACGTAGCCAC
CACGCCTACCGACACGCGACCATGCGCCTCTTTATGACGGCTGCGGCCAA
TCACAACAATCCACTAAGTCTCGAGGAGATTTCCCAGAAAATCAAATTTG
AAGTCACAGATTTGGACGCAGGGGCCTATGGGCTGGAGAGCAAGGACGTG
GCTTATGCAGGTACGTGTTGGTGTCTATATTTCACTGAGTGGTGATTGCC
TTGAAGTAGGAGTCAATGTAGAAGAGGACTGGGTCTGTGTACAGCGTGAT
CATGTGTACTCCATCAAAGAATTTGTGGCCCAGAAAATACCTTTGATTGT
GATCCAGATGTTTCTTCTCTTTCGTCGGTGTCTCATCATACCATCCCGGC
TCATTCACACCTCCTCCTTACCATCTTTTCTCTCTTCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCCCAAATAAATAGTG
GAAATTGCCAAGGTCAAAATCCCCCTTCCTGAAGGGACCGGGTTAGGACT
GGGCTTGGAAGAACTCAAACGCGGGCGTGACGGACGTGGATGTGTATTGA
TTTCCGCCATCCAACCGGGGGGGAATGCCGAAAAGGCTGCAGGCGAAGAG
CAGAAGATACGTGTGGGGGACATGATTTGTTACCTGGGACGAGAGCCAAA
CGGGATGGTACGCACAGAGGGGTTGGATTTTGAGCAGACCATGGAGGCAC
TACGTACATATATCCAAAGTAACGACGCCACTTCCATCACCCTCGTTCTT
AAGAGACTCGTCTTTCGCGAGTCCGTCGATATCTCGCTGTCTTACACCCC
CTCCCCAGAGGAAACAGAGAAATCGGGCACCGAACCCTGGACGCAATCGC
TGTCCATGCTATGTGGCTCACAATTGAGGAAGGAGCTGTTGCGCTCCGGC
TTGCCTGTGTATGATAAGAACACGCTCCGGTTCGATCAGCCCTACGTGAC
GGGGGACTGTGGCGGGGAGGGAATCTGCGGGACGTGTCTCGTGCAGGTGC
TAGAAGGAAAGGAGCTGTTGAATGAACCGGATGCGATCGAGGAGATGGTA
ATTCGGAAGTGGGGGGCGGCGAATTGGAGGTTGTCGTGTCGGGTGGTGGT
AGGGGCAACAAATACTCCGGGTACAGTGAGGTTTCGATTGATGCCTCAGG
CGCCGTTTATTAGGAAGAGGTGAAGGAGGGGGGGGAAGG
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Coding sequence (CDS) from alignment at scaffold_21:39333..40771-

>mRNA_7672 ID=mRNA_7672|Name=jgi.p|Nanoce1779_2|599613|organism=Nannochloropsis oceanica|type=CDS|length=2046bp|location=Sequence derived from alignment at scaffold_21:39333..40771- (Nannochloropsis oceanica)
TGGAAATTGCCAAGGTCAAAATCCCCCTTCCTGAAGGGACCGGGTTAGGA
CTGGGCTTGGAAGAACTCAAACGCGGGCGTGACGGACGTGGATGTGTATT
GATTTCCGCCATCCAACCGGGGGGGAATGCCGAAAAGGCTGCAGGCGAAG
AGCAGAAGATACGTGTGGGGGACATGATTTGTTACCTGGGACGAGAGCCA
AACGGGATGGTACGCACAGAGGGGTTGGATTTTGAGCAGACCATGGAGGC
ACTACGTACATATATCCAAAGTAACGACGCCACTTCCATCACCCTCGTTC
TTAAGAGACTCGTCTTTCGCGAGTCCGTCGATATCTCGCTGTCTTACACC
CCCTCCCCAGAGGAAACAGAGAAATCGGGCACCGAACCCTGGACGCAATC
GCTGTCCATGCTATGTGGCTCACAATTGAGGAAGGAGCTGTTGCGCTCCG
GCTTGCCTGTGTATGATAAGAACACGCTCCGGTTCGATCAGCCCTACGTG
ACGGGGGACTGTGGCGGGGAGGGAATCTGCGGGACGTGTCTCGTGCAGGT
GCTAGAAGGAAAGGAGCTGTTGAATGAACCGGATGCGATCGAGGAGATGG
TAATTCGGAAGTGGGGGGCGGCGAATTGGAGGTTGTCGTGTCGGGTGGTG
GTAGGGGCAACAAATACTCCGGGTACAGTGAGGTTTCGATTGATGCCTCA
GGCGCCGTTTATTAGGAAGAGGTGAATGGCGCCGCGCTCGACATGTAGCG
TCCTCCTGGCCGCCTATTTTATATGCCGTGCAGTCACCCAGGCATTCGTC
CACCTTCCTGCTCCCCCCCCCTTATCTCCTGCCACTGCTGCTGCGGCTGC
TGTACGTAGCCACCACGCCTACCGACACGCGACCATGCGCCTCTTTATGA
CGGCTGCGGCCAATCACAACAATCCACTAAGTCTCGAGGAGATTTCCCAG
AAAATCAAATTTGAAGTCACAGATTTGGACGCAGGGGCCTATGGGCTGGA
GAGCAAGGACGTGGCTTATGCAGTGGAAATTGCCAAGGTCAAAATCCCCC
TTCCTGAAGGGACCGGGTTAGGACTGGGCTTGGAAGAACTCAAACGCGGG
CGTGACGGACGTGGATGTGTATTGATTTCCGCCATCCAACCGGGGGGGAA
TGCCGAAAAGGCTGCAGGCGAAGAGCAGAAGATACGTGTGGGGGACATGA
TTTGTTACCTGGGACGAGAGCCAAACGGGATGGTACGCACAGAGGGGTTG
GATTTTGAGCAGACCATGGAGGCACTACGTACATATATCCAAAGTAACGA
CGCCACTTCCATCACCCTCGTTCTTAAGAGACTCGTCTTTCGCGAGTCCG
TCGATATCTCGCTGTCTTACACCCCCTCCCCAGAGGAAACAGAGAAATCG
GGCACCGAACCCTGGACGCAATCGCTGTCCATGCTATGTGGCTCACAATT
GAGGAAGGAGCTGTTGCGCTCCGGCTTGCCTGTGTATGATAAGAACACGC
TCCGGTTCGATCAGCCCTACGTGACGGGGGACTGTGGCGGGGAGGGAATC
TGCGGGACGTGTCTCGTGCAGGTGCTAGAAGGAAAGGAGCTGTTGAATGA
ACCGGATGCGATCGAGGAGATGGTAATTCGGAAGTGGGGGGCGGCGAATT
GGAGGTTGTCGTGTCGGGTGGTGGTAGGGGCAACAAATACTCCGGGTACA
GTGAGGTTTCGATTGATGCCTCAGGCGCCGTTTATTAGGAAGAGGTGAAT
GGCGCCGCGCTCGACATGTAGCGTCCTCCTGGCCGCCTATTTTATATGCC
GTGCAGTCACCCAGGCATTCGTCCACCTTCCTGCTCCCCCCCCCTTATCT
CCTGCCACTGCTGCTGCGGCTGCTGTACGTAGCCACCACGCCTACCGACA
CGCGACCATGCGCCTCTTTATGACGGCTGCGGCCAATCACAACAATCCAC
TAAGTCTCGAGGAGATTTCCCAGAAAATCAAATTTGAAGTCACAGATTTG
GACGCAGGGGCCTATGGGCTGGAGAGCAAGGACGTGGCTTATGCAG
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Synonyms
Publications