jgi.p|Nanoce1779_2|574068, mRNA_767 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574068
Unique Name	mRNA_767
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1380
Alignment location	scaffold_2:389680..391531 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574154
Track	FilteredModels2
ProteinId	574068

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:389680..391531 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574068	gene_767	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574068	mRNA_767-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_767	CDS_767	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:389680..391531-
coding sequence from alignment at scaffold_2:389680..391531-

mRNA sequence

>mRNA_767 ID=mRNA_767|Name=jgi.p|Nanoce1779_2|574068|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp
AGCACCTTATAGCGGCGCTTGAGGTAGCTGGACCTCGAAAGAGGGAGGGC
GGGGCGCCCTGAAAAGCGGCGGAGAGCATCATTTTCACCTCGCACCATCG
CCTGGAGCCGGGAGGCTGAATCGTCCCAGGCCTGAGCCATGGAGATCATG
ACCATTTTAATTGTCTACATCGTCCTCGTTACATTCTTGGTCTGGGTTTG
CGTGGTAGCGGACCCCAACAGTGACTCATTAGGCGGCAAGCTCAACATCC
TCCTTACCGAAGATCTTCCCGGATTACTCACCAAAAAGCTCCGCCGTTGC
CTGCCCTCCTCGCTCTTCGACTCACTCGCCCGCTCCTACGACTATGTGGT
GAATCAACGCAATCCCCTCCTCCAGCTCCTCTACCTCTTTCTTTACCTCG
GCTCCTTCGCCACCTTCATCTATGAAGGCTTGGGACGCATGGAGCCTATA
GACTTGGCCTTTTCTACCGCGTTGGTCGTTGCCTGTTTGTCTTCGTTTGT
CGTAGCGTGCTCGATCCCGGCGGGTACCATCACCCCGTCGAGCTGGCCAA
CCTTTGACAATTACAAGGCGGACGAGATTATCTATGCTTCCGGAAAAGAG
TGTGTGACATGTAAGGTACCCAAATTGGCGAGGAGCAAGCATTGTCGTCT
GTGTGGGGTGTGTCAGTCGAGGTTTGATCACCACTGTGGGTGGTTAAACC
AGTGCGTGGGTGAGCTGAACTATAGACATTTTCTCTTCTTTTTGGCGTTG
CACAGCATGACTTTCTTTTGGGGAAGTTCGTGTTTATGGGAGGTGTTGAG
GAAAGAAATGGCAGAGAAACAATTGTGGGAGGCAAAATTCTATAGTCCGA
GCTCTGGGGCGACGGTGGGGGCGACCCCAGTGGTGGTGTTGCAATATCTT
GTGGTGCATGAAGGAGCAGTGTGTGGAGTGCTTGCATTGTGCTTTGTCAT
GGCTGTGGTACTGGCGGGGTTTTTGTTGTATCACTTGCGTTTGGCCTTGA
GAAATATCACGACGAACGAGTCGTTTAAGTGGTCTGCGGTGAGGGCACAT
GCGAAGTTGGCGAGGGACCATGCGAGGAGGGCGCATGAGGCGTCGGGAGG
AGCCCTGCCTTTACGTCAGATCGCCGACCCCCAAAATTCCTATCACATCT
CCTTTGTCGACAACTTGAAAGAAGTCTTCTTTCCACGCTGTGAAAGACCA
TGCACAGGTTCAGGGAGAAAAGCGGGAGGAACAGCAGCAGCAGGGGGGGG
ACCCAAGCCAGAGTTGAACGATTTAACCTCCTCTCCTTCACGGCTAAAAA
AGGACTAGGATTGCAGGATACTGGACTGAATGAAGAAAAACTCAGAAAGC
ATAAATAAAATGAGAAAAAAATAAAAATAC

protein sequence of jgi.p|Nanoce1779_2|574068

>mRNA_767-protein ID=mRNA_767-protein|Name=jgi.p|Nanoce1779_2|574068|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MEIMTILIVYIVLVTFLVWVCVVADPNSDSLGGKLNILLTEDLPGLLTKK
LRRCLPSSLFDSLARSYDYVVNQRNPLLQLLYLFLYLGSFATFIYEGLGR
MEPIDLAFSTALVVACLSSFVVACSIPAGTITPSSWPTFDNYKADEIIYA
SGKECVTCKVPKLARSKHCRLCGVCQSRFDHHCGWLNQCVGELNYRHFLF
FLALHSMTFFWGSSCLWEVLRKEMAEKQLWEAKFYSPSSGATVGATPVVV
LQYLVVHEGAVCGVLALCFVMAVVLAGFLLYHLRLALRNITTNESFKWSA
VRAHAKLARDHARRAHEASGGALPLRQIADPQNSYHISFVDNLKEVFFPR
CERPCTGSGRKAGGTAAAGGGPKPELNDLTSSPSRLKKD*

mRNA from alignment at scaffold_2:389680..391531-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_767 ID=mRNA_767|Name=jgi.p|Nanoce1779_2|574068|organism=Nannochloropsis oceanica|type=mRNA|length=1852bp|location=Sequence derived from alignment at scaffold_2:389680..391531- (Nannochloropsis oceanica)
AGCACCTTATAGCGGCGCTTGAGGTAGCTGGACCTCGAAAGAGGGAGGGC
GGGGCGCCCTGAAAAGCGGCGGAGAGCATCATTTTCACCTCGCACCATCG
CCTGGAGCCGGGAGGCTGAATCGTCCCAGGCCTGAGCCATGGAGATCATG
ACCATTTTAATTGTCTACATCGTCCTCGTTACATTCTTGGTCTGGGTTTG
CGTGGTAGCGGACCCCAACAGTGACTCATTAGGTACGTTTGTGTCTCTCT
AAGAGGGCACGCCGCCTCTGGGCTTGAATGAAGTGATGTCCCCCTTCCGG
GCTTGAATGAAGTGATGTAGGACACAGGGTACTAGAGTGAGAATCGTCAA
CTCTCTTGCTTCCTCTTCTCTTACTGCTAAGCAGCTTTATCTACTTATGT
ACTGCATAGTTATGCCTGTACGTCTAGCTCCAATTTTGATGTCGCCACTC
ATCCATTCACATTTAAGAGACCCACCCTCCTCCTCCCTCTTTCCCCACCT
ACGTCAATAACTCCATTCCAACACTAGGCGGCAAGCTCAACATCCTCCTT
ACCGAAGATCTTCCCGGATTACTCACCAAAAAGCTCCGCCGTTGCCTGCC
CTCCTCGCTCTTCGACTCACTCGCCCGCTCCTACGACTATGTGGTGAATC
AACGCAATCCCCTCCTCCAGCTCCTCTACCTCTTTCTTTACCTCGGCTCC
TTCGCCACCTTCATCTATGAAGGCTTGGGACGCATGGAGCCTATAGACTT
GGCCTTTTCTACCGCGTTGGTCGTTGCCTGTTTGTCTTCGTTTGTCGTAG
CGTGCTCGATCCCGGCGGGTACCATCACCCCGTCGAGCTGGCCAACCTTT
GACAATTACAAGGCGGACGAGATTATCTATGCTTCCGGAAAAGAGTGTGT
GACATGTAAGGTACCCAAATTGGCGAGGAGCAAGCATTGTCGTCTGTGTG
GGGTGTGTCAGTCGAGGTTTGATCACCACTGTGGGTGGTTAAACCAGTGC
GTGGGTGAGCTGAACTATAGACATTTTCTCTTCTTTTTGGCGTTGCACAG
CATGACTTTCTTTTGGGGAAGTTCGTGTTTATGGGAGGTGTTGAGGAAAG
AAATGGCAGAGAAACAATTGTGGGAGGCAAAATTCTATAGTCCGAGCTCT
GGGGCGACGGTGGGGGCGACCCCAGTGGTGGTGTTGCAATATCTTGTGGT
GCATGAAGGAGCAGTGTGTGGAGTGCTTGCATTGTGCTTTGTCATGGCTG
TGGTACTGGCGGGGTTTTTGTTGTATCACTTGCGTTTGGCCTTGAGAAAT
ATCACGACGAACGAGTCGTTTAAGTGGTCTGCGGTGAGGGCACATGCGAA
GTTGGCGAGGGACCATGCGAGGAGGGCGCATGAGGCGTCGGGTAAGGATT
CAAGAAGGGAAAGAGTGGACAAGGGGAGGGATGGACTGCACGAGAAAATT
GGCTCGATCTTATCGAACGGATTTTCTAGATGCAAGATTTGCAAGGTCTC
GAACCGCTTCATGGATGTCGTGTATGATGCTCACTTCTCTTTTGTCCCTC
CCTTCCCTTGAACGTCAGGAGGAGCCCTGCCTTTACGTCAGATCGCCGAC
CCCCAAAATTCCTATCACATCTCCTTTGTCGACAACTTGAAAGAAGTCTT
CTTTCCACGCTGTGAAAGACCATGCACAGGTTCAGGGAGAAAAGCGGGAG
GAACAGCAGCAGCAGGGGGGGGACCCAAGCCAGAGTTGAACGATTTAACC
TCCTCTCCTTCACGGCTAAAAAAGGACTAGGATTGCAGGATACTGGACTG
AATGAAGAAAAACTCAGAAAGCATAAATAAAATGAGAAAAAAATAAAAAT
AC

Coding sequence (CDS) from alignment at scaffold_2:389680..391531-

>mRNA_767 ID=mRNA_767|Name=jgi.p|Nanoce1779_2|574068|organism=Nannochloropsis oceanica|type=CDS|length=3510bp|location=Sequence derived from alignment at scaffold_2:389680..391531- (Nannochloropsis oceanica)
GAGGAGCCCTGCCTTTACGTCAGATCGCCGACCCCCAAAATTCCTATCAC
ATCTCCTTTGTCGACAACTTGAAAGAAGTCTTCTTTCCACGCTGTGAAAG
ACCATGCACAGGTTCAGGGAGAAAAGCGGGAGGAACAGCAGCAGCAGGGG
GGGGACCCAAGCCAGAGTTGAACGATTTAACCTCCTCTCCTTCACGGCTA
AAAAAGGACTAGGCGGCAAGCTCAACATCCTCCTTACCGAAGATCTTCCC
GGATTACTCACCAAAAAGCTCCGCCGTTGCCTGCCCTCCTCGCTCTTCGA
CTCACTCGCCCGCTCCTACGACTATGTGGTGAATCAACGCAATCCCCTCC
TCCAGCTCCTCTACCTCTTTCTTTACCTCGGCTCCTTCGCCACCTTCATC
TATGAAGGCTTGGGACGCATGGAGCCTATAGACTTGGCCTTTTCTACCGC
GTTGGTCGTTGCCTGTTTGTCTTCGTTTGTCGTAGCGTGCTCGATCCCGG
CGGGTACCATCACCCCGTCGAGCTGGCCAACCTTTGACAATTACAAGGCG
GACGAGATTATCTATGCTTCCGGAAAAGAGTGTGTGACATGTAAGGTACC
CAAATTGGCGAGGAGCAAGCATTGTCGTCTGTGTGGGGTGTGTCAGTCGA
GGTTTGATCACCACTGTGGGTGGTTAAACCAGTGCGTGGGTGAGCTGAAC
TATAGACATTTTCTCTTCTTTTTGGCGTTGCACAGCATGACTTTCTTTTG
GGGAAGTTCGTGTTTATGGGAGGTGTTGAGGAAAGAAATGGCAGAGAAAC
AATTGTGGGAGGCAAAATTCTATAGTCCGAGCTCTGGGGCGACGGTGGGG
GCGACCCCAGTGGTGGTGTTGCAATATCTTGTGGTGCATGAAGGAGCAGT
GTGTGGAGTGCTTGCATTGTGCTTTGTCATGGCTGTGGTACTGGCGGGGT
TTTTGTTGTATCACTTGCGTTTGGCCTTGAGAAATATCACGACGAACGAG
TCGTTTAAGTGGTCTGCGGTGAGGGCACATGCGAAGTTGGCGAGGGACCA
TGCGAGGAGGGCGCATGAGGCGTCGGATGGAGATCATGACCATTTTAATT
GTCTACATCGTCCTCGTTACATTCTTGGTCTGGGTTTGCGTGGTAGCGGA
CCCCAACAGTGACTCATTAGGAGGAGCCCTGCCTTTACGTCAGATCGCCG
ACCCCCAAAATTCCTATCACATCTCCTTTGTCGACAACTTGAAAGAAGTC
TTCTTTCCACGCTGTGAAAGACCATGCACAGGTTCAGGGAGAAAAGCGGG
AGGAACAGCAGCAGCAGGGGGGGGACCCAAGCCAGAGTTGAACGATTTAA
CCTCCTCTCCTTCACGGCTAAAAAAGGACTAGGCGGCAAGCTCAACATCC
TCCTTACCGAAGATCTTCCCGGATTACTCACCAAAAAGCTCCGCCGTTGC
CTGCCCTCCTCGCTCTTCGACTCACTCGCCCGCTCCTACGACTATGTGGT
GAATCAACGCAATCCCCTCCTCCAGCTCCTCTACCTCTTTCTTTACCTCG
GCTCCTTCGCCACCTTCATCTATGAAGGCTTGGGACGCATGGAGCCTATA
GACTTGGCCTTTTCTACCGCGTTGGTCGTTGCCTGTTTGTCTTCGTTTGT
CGTAGCGTGCTCGATCCCGGCGGGTACCATCACCCCGTCGAGCTGGCCAA
CCTTTGACAATTACAAGGCGGACGAGATTATCTATGCTTCCGGAAAAGAG
TGTGTGACATGTAAGGTACCCAAATTGGCGAGGAGCAAGCATTGTCGTCT
GTGTGGGGTGTGTCAGTCGAGGTTTGATCACCACTGTGGGTGGTTAAACC
AGTGCGTGGGTGAGCTGAACTATAGACATTTTCTCTTCTTTTTGGCGTTG
CACAGCATGACTTTCTTTTGGGGAAGTTCGTGTTTATGGGAGGTGTTGAG
GAAAGAAATGGCAGAGAAACAATTGTGGGAGGCAAAATTCTATAGTCCGA
GCTCTGGGGCGACGGTGGGGGCGACCCCAGTGGTGGTGTTGCAATATCTT
GTGGTGCATGAAGGAGCAGTGTGTGGAGTGCTTGCATTGTGCTTTGTCAT
GGCTGTGGTACTGGCGGGGTTTTTGTTGTATCACTTGCGTTTGGCCTTGA
GAAATATCACGACGAACGAGTCGTTTAAGTGGTCTGCGGTGAGGGCACAT
GCGAAGTTGGCGAGGGACCATGCGAGGAGGGCGCATGAGGCGTCGGATGG
AGATCATGACCATTTTAATTGTCTACATCGTCCTCGTTACATTCTTGGTC
TGGGTTTGCGTGGTAGCGGACCCCAACAGTGACTCATTAGGAGGAGCCCT
GCCTTTACGTCAGATCGCCGACCCCCAAAATTCCTATCACATCTCCTTTG
TCGACAACTTGAAAGAAGTCTTCTTTCCACGCTGTGAAAGACCATGCACA
GGTTCAGGGAGAAAAGCGGGAGGAACAGCAGCAGCAGGGGGGGGACCCAA
GCCAGAGTTGAACGATTTAACCTCCTCTCCTTCACGGCTAAAAAAGGACT
AGGCGGCAAGCTCAACATCCTCCTTACCGAAGATCTTCCCGGATTACTCA
CCAAAAAGCTCCGCCGTTGCCTGCCCTCCTCGCTCTTCGACTCACTCGCC
CGCTCCTACGACTATGTGGTGAATCAACGCAATCCCCTCCTCCAGCTCCT
CTACCTCTTTCTTTACCTCGGCTCCTTCGCCACCTTCATCTATGAAGGCT
TGGGACGCATGGAGCCTATAGACTTGGCCTTTTCTACCGCGTTGGTCGTT
GCCTGTTTGTCTTCGTTTGTCGTAGCGTGCTCGATCCCGGCGGGTACCAT
CACCCCGTCGAGCTGGCCAACCTTTGACAATTACAAGGCGGACGAGATTA
TCTATGCTTCCGGAAAAGAGTGTGTGACATGTAAGGTACCCAAATTGGCG
AGGAGCAAGCATTGTCGTCTGTGTGGGGTGTGTCAGTCGAGGTTTGATCA
CCACTGTGGGTGGTTAAACCAGTGCGTGGGTGAGCTGAACTATAGACATT
TTCTCTTCTTTTTGGCGTTGCACAGCATGACTTTCTTTTGGGGAAGTTCG
TGTTTATGGGAGGTGTTGAGGAAAGAAATGGCAGAGAAACAATTGTGGGA
GGCAAAATTCTATAGTCCGAGCTCTGGGGCGACGGTGGGGGCGACCCCAG
TGGTGGTGTTGCAATATCTTGTGGTGCATGAAGGAGCAGTGTGTGGAGTG
CTTGCATTGTGCTTTGTCATGGCTGTGGTACTGGCGGGGTTTTTGTTGTA
TCACTTGCGTTTGGCCTTGAGAAATATCACGACGAACGAGTCGTTTAAGT
GGTCTGCGGTGAGGGCACATGCGAAGTTGGCGAGGGACCATGCGAGGAGG
GCGCATGAGGCGTCGGATGGAGATCATGACCATTTTAATTGTCTACATCG
TCCTCGTTACATTCTTGGTCTGGGTTTGCGTGGTAGCGGACCCCAACAGT
GACTCATTAG

Synonyms

Publications