jgi.p|Nanoce1779_2|599601, mRNA_7669 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599601
Unique Name	mRNA_7669
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1926
Alignment location	scaffold_21:29685..31610 +

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Properties


Property Name	Value
TranscriptId	599687
Track	FilteredModels2
ProteinId	599601

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:29685..31610 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599601	gene_7669	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599601	mRNA_7669-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7669	CDS_7669	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:29685..31610+
coding sequence from alignment at scaffold_21:29685..31610+

mRNA sequence

>mRNA_7669 ID=mRNA_7669|Name=jgi.p|Nanoce1779_2|599601|organism=Nannochloropsis oceanica|type=mRNA|length=1926bp
CAACAGGCAGGCACATTGCCCCTCTGAAGCCGCCTCCGGGTCCGGGCACT
ATGCGCCGTCTCCTCCGGCCCTGCCAGCGGCAAGCCTGGCGTCAGCCCTC
CACTTTCGCCGCTCACCGTGGCAGTCCATTGGCCACTTTTAGCCTCTGCG
GTCCAACGTCTTCCCTTACATTTCGCGGTGGCCTCGGCCAGCGGCGGGGC
ATCATGATGGAAAAAGGCAAGCAGGGCAATCTGTACGGCAACAACACCAA
ACTGCAGCAACGCACGTCGCTCTCCCCATACGAGATTTTGGCCACCAAGC
TCGGCCGCTTCGACCGAAGCATGCAAGCCTTGCAAGTGGACGCAAAGGGA
GAAGTTACGACGCGGACGACCTCTATAAAGGAACTCTTGCTCAACACTGA
AATGCACGTACGGGACCTTATTGCGCTCTCGCCCGACGCCCTTCACAAGC
GCGGCGGTCGCCTCACACCTGTCATTCTCCCACGCAATGACGTCATCATC
TTTGTCATGCATCCCCTGCGGCTTGTCATTTCGAAAGATAGTTGCTTAGC
TTTTGACCCACAAGACCCGACCGTCCAATCCGTAATTGCTGATATATCCA
GCGCAATAAAAATCCAGCACTTGCAGCAAACGCACTTGGCCAAGACCGAG
GGTGCTGCCTTGTCTGCAATTGGGACTTACGAAGTCTCGTACGAGCTAGT
TGTGGTGGAACAGGCCTTACGGAGTTTCTGTAACCAGTTTAGCCGGATCA
AGGAACTTCTGACGCTGATCGTCGAGACGGAGCTCAAGGAGCTAGTGGAT
TCGCAAGGTTCCGACCAAGAAGAGCAATTGTTCAAGCTGGTCCCATTGAA
AGATGGTCTGGCCGTTGCGTACAGCAATATGCAGGAAACCGTCGACGTGA
TTCAGGAGTTGGTCAATTCTGAAGAGGATATGTTGGCGATGCTGTTGTCT
GAAAAAGCCATGATGGAGAAGAATCATGATGGGCAATCGAACCAAATTCA
GTGCCTGGACCCGACCCTGCATTCGGAAGTAGAGCTCCTCCTCGAGAACT
ATCTCCGACAATTGTCTTTGATCGGACAGCAGATCAAGATTCTCCAGGCG
CGGGTTCAGAGCGCTCAGGAGGTGTTCGCGATTAATGTCGATCTTATGAG
GAATCGCGTGTTGCGCGTTACCCTTCTGTTGACAGTGGTCAGTACCAGTT
TAGCATCTGCAGCCACAATGGGTGCATTCTTTGGCATGAATGTCAAATTG
CCTGGCTCGCTCGACACGAATCCTGAGGCCTTCATGTACATAACCATCGG
GGCCTTGGGACTGGGCGCAGGGCTTTTTGCCCTTGCTACTGCCTTTGCAC
GCGGGCACGGAAAGGACCGAATGCGCAAAGACTTGCAGAGTGTTGCAGCT
TATCAATCTATTTTCAAACATATTCGCTCCGTCTCCCAGGCCATTTATCA
AACCGGCGTCGACCCTACGGATGTGGACATGAGCGATTCTAAGGAGTTTC
GTGCGTATTTTAAGAAGCTTTTGACTGATTATCGACATTACGATGTGTCC
TGGCAGGAAGTGGACGTGTTGCTAGAAGTAATTCGAACCTCGGCGGAGCA
GCTTCGACAACAGAAGCTCCACAGCGACGAGACGAGTGAGGAGAAAATTT
ACATGAAGCTTTTTGAATCCTTGGCCGCCCAAGACATAGAAAATTCGAAC
GCAAACTTGGATGGCAAAGATGTGCCTGGTGCGGCCGGTAGGACCGCTGC
GGGAGGAAATGTCGCTGGAGGAAAGACAACACCACCTTCGCATTCGTCAC
CATCATAGGTATGGGGGTAGGTGAATTTCAAAGACAGGCAAATTTGCATG
TGTAGAATAGATGACGATTTTGGACAGAATGAAGAAAATGTATCTGGCAC
GGGATTTCGATTCCCCCCTCCAAATT

protein sequence of jgi.p|Nanoce1779_2|599601

>mRNA_7669-protein ID=mRNA_7669-protein|Name=jgi.p|Nanoce1779_2|599601|organism=Nannochloropsis oceanica|type=polypeptide|length=586bp
MRRLLRPCQRQAWRQPSTFAAHRGSPLATFSLCGPTSSLTFRGGLGQRRG
IMMEKGKQGNLYGNNTKLQQRTSLSPYEILATKLGRFDRSMQALQVDAKG
EVTTRTTSIKELLLNTEMHVRDLIALSPDALHKRGGRLTPVILPRNDVII
FVMHPLRLVISKDSCLAFDPQDPTVQSVIADISSAIKIQHLQQTHLAKTE
GAALSAIGTYEVSYELVVVEQALRSFCNQFSRIKELLTLIVETELKELVD
SQGSDQEEQLFKLVPLKDGLAVAYSNMQETVDVIQELVNSEEDMLAMLLS
EKAMMEKNHDGQSNQIQCLDPTLHSEVELLLENYLRQLSLIGQQIKILQA
RVQSAQEVFAINVDLMRNRVLRVTLLLTVVSTSLASAATMGAFFGMNVKL
PGSLDTNPEAFMYITIGALGLGAGLFALATAFARGHGKDRMRKDLQSVAA
YQSIFKHIRSVSQAIYQTGVDPTDVDMSDSKEFRAYFKKLLTDYRHYDVS
WQEVDVLLEVIRTSAEQLRQQKLHSDETSEEKIYMKLFESLAAQDIENSN
ANLDGKDVPGAAGRTAAGGNVAGGKTTPPSHSSPS*

mRNA from alignment at scaffold_21:29685..31610+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7669 ID=mRNA_7669|Name=jgi.p|Nanoce1779_2|599601|organism=Nannochloropsis oceanica|type=mRNA|length=1926bp|location=Sequence derived from alignment at scaffold_21:29685..31610+ (Nannochloropsis oceanica)
CAACAGGCAGGCACATTGCCCCTCTGAAGCCGCCTCCGGGTCCGGGCACT
ATGCGCCGTCTCCTCCGGCCCTGCCAGCGGCAAGCCTGGCGTCAGCCCTC
CACTTTCGCCGCTCACCGTGGCAGTCCATTGGCCACTTTTAGCCTCTGCG
GTCCAACGTCTTCCCTTACATTTCGCGGTGGCCTCGGCCAGCGGCGGGGC
ATCATGATGGAAAAAGGCAAGCAGGGCAATCTGTACGGCAACAACACCAA
ACTGCAGCAACGCACGTCGCTCTCCCCATACGAGATTTTGGCCACCAAGC
TCGGCCGCTTCGACCGAAGCATGCAAGCCTTGCAAGTGGACGCAAAGGGA
GAAGTTACGACGCGGACGACCTCTATAAAGGAACTCTTGCTCAACACTGA
AATGCACGTACGGGACCTTATTGCGCTCTCGCCCGACGCCCTTCACAAGC
GCGGCGGTCGCCTCACACCTGTCATTCTCCCACGCAATGACGTCATCATC
TTTGTCATGCATCCCCTGCGGCTTGTCATTTCGAAAGATAGTTGCTTAGC
TTTTGACCCACAAGACCCGACCGTCCAATCCGTAATTGCTGATATATCCA
GCGCAATAAAAATCCAGCACTTGCAGCAAACGCACTTGGCCAAGACCGAG
GGTGCTGCCTTGTCTGCAATTGGGACTTACGAAGTCTCGTACGAGCTAGT
TGTGGTGGAACAGGCCTTACGGAGTTTCTGTAACCAGTTTAGCCGGATCA
AGGAACTTCTGACGCTGATCGTCGAGACGGAGCTCAAGGAGCTAGTGGAT
TCGCAAGGTTCCGACCAAGAAGAGCAATTGTTCAAGCTGGTCCCATTGAA
AGATGGTCTGGCCGTTGCGTACAGCAATATGCAGGAAACCGTCGACGTGA
TTCAGGAGTTGGTCAATTCTGAAGAGGATATGTTGGCGATGCTGTTGTCT
GAAAAAGCCATGATGGAGAAGAATCATGATGGGCAATCGAACCAAATTCA
GTGCCTGGACCCGACCCTGCATTCGGAAGTAGAGCTCCTCCTCGAGAACT
ATCTCCGACAATTGTCTTTGATCGGACAGCAGATCAAGATTCTCCAGGCG
CGGGTTCAGAGCGCTCAGGAGGTGTTCGCGATTAATGTCGATCTTATGAG
GAATCGCGTGTTGCGCGTTACCCTTCTGTTGACAGTGGTCAGTACCAGTT
TAGCATCTGCAGCCACAATGGGTGCATTCTTTGGCATGAATGTCAAATTG
CCTGGCTCGCTCGACACGAATCCTGAGGCCTTCATGTACATAACCATCGG
GGCCTTGGGACTGGGCGCAGGGCTTTTTGCCCTTGCTACTGCCTTTGCAC
GCGGGCACGGAAAGGACCGAATGCGCAAAGACTTGCAGAGTGTTGCAGCT
TATCAATCTATTTTCAAACATATTCGCTCCGTCTCCCAGGCCATTTATCA
AACCGGCGTCGACCCTACGGATGTGGACATGAGCGATTCTAAGGAGTTTC
GTGCGTATTTTAAGAAGCTTTTGACTGATTATCGACATTACGATGTGTCC
TGGCAGGAAGTGGACGTGTTGCTAGAAGTAATTCGAACCTCGGCGGAGCA
GCTTCGACAACAGAAGCTCCACAGCGACGAGACGAGTGAGGAGAAAATTT
ACATGAAGCTTTTTGAATCCTTGGCCGCCCAAGACATAGAAAATTCGAAC
GCAAACTTGGATGGCAAAGATGTGCCTGGTGCGGCCGGTAGGACCGCTGC
GGGAGGAAATGTCGCTGGAGGAAAGACAACACCACCTTCGCATTCGTCAC
CATCATAGGTATGGGGGTAGGTGAATTTCAAAGACAGGCAAATTTGCATG
TGTAGAATAGATGACGATTTTGGACAGAATGAAGAAAATGTATCTGGCAC
GGGATTTCGATTCCCCCCTCCAAATT

Coding sequence (CDS) from alignment at scaffold_21:29685..31610+

>mRNA_7669 ID=mRNA_7669|Name=jgi.p|Nanoce1779_2|599601|organism=Nannochloropsis oceanica|type=CDS|length=1758bp|location=Sequence derived from alignment at scaffold_21:29685..31610+ (Nannochloropsis oceanica)
ATGCGCCGTCTCCTCCGGCCCTGCCAGCGGCAAGCCTGGCGTCAGCCCTC
CACTTTCGCCGCTCACCGTGGCAGTCCATTGGCCACTTTTAGCCTCTGCG
GTCCAACGTCTTCCCTTACATTTCGCGGTGGCCTCGGCCAGCGGCGGGGC
ATCATGATGGAAAAAGGCAAGCAGGGCAATCTGTACGGCAACAACACCAA
ACTGCAGCAACGCACGTCGCTCTCCCCATACGAGATTTTGGCCACCAAGC
TCGGCCGCTTCGACCGAAGCATGCAAGCCTTGCAAGTGGACGCAAAGGGA
GAAGTTACGACGCGGACGACCTCTATAAAGGAACTCTTGCTCAACACTGA
AATGCACGTACGGGACCTTATTGCGCTCTCGCCCGACGCCCTTCACAAGC
GCGGCGGTCGCCTCACACCTGTCATTCTCCCACGCAATGACGTCATCATC
TTTGTCATGCATCCCCTGCGGCTTGTCATTTCGAAAGATAGTTGCTTAGC
TTTTGACCCACAAGACCCGACCGTCCAATCCGTAATTGCTGATATATCCA
GCGCAATAAAAATCCAGCACTTGCAGCAAACGCACTTGGCCAAGACCGAG
GGTGCTGCCTTGTCTGCAATTGGGACTTACGAAGTCTCGTACGAGCTAGT
TGTGGTGGAACAGGCCTTACGGAGTTTCTGTAACCAGTTTAGCCGGATCA
AGGAACTTCTGACGCTGATCGTCGAGACGGAGCTCAAGGAGCTAGTGGAT
TCGCAAGGTTCCGACCAAGAAGAGCAATTGTTCAAGCTGGTCCCATTGAA
AGATGGTCTGGCCGTTGCGTACAGCAATATGCAGGAAACCGTCGACGTGA
TTCAGGAGTTGGTCAATTCTGAAGAGGATATGTTGGCGATGCTGTTGTCT
GAAAAAGCCATGATGGAGAAGAATCATGATGGGCAATCGAACCAAATTCA
GTGCCTGGACCCGACCCTGCATTCGGAAGTAGAGCTCCTCCTCGAGAACT
ATCTCCGACAATTGTCTTTGATCGGACAGCAGATCAAGATTCTCCAGGCG
CGGGTTCAGAGCGCTCAGGAGGTGTTCGCGATTAATGTCGATCTTATGAG
GAATCGCGTGTTGCGCGTTACCCTTCTGTTGACAGTGGTCAGTACCAGTT
TAGCATCTGCAGCCACAATGGGTGCATTCTTTGGCATGAATGTCAAATTG
CCTGGCTCGCTCGACACGAATCCTGAGGCCTTCATGTACATAACCATCGG
GGCCTTGGGACTGGGCGCAGGGCTTTTTGCCCTTGCTACTGCCTTTGCAC
GCGGGCACGGAAAGGACCGAATGCGCAAAGACTTGCAGAGTGTTGCAGCT
TATCAATCTATTTTCAAACATATTCGCTCCGTCTCCCAGGCCATTTATCA
AACCGGCGTCGACCCTACGGATGTGGACATGAGCGATTCTAAGGAGTTTC
GTGCGTATTTTAAGAAGCTTTTGACTGATTATCGACATTACGATGTGTCC
TGGCAGGAAGTGGACGTGTTGCTAGAAGTAATTCGAACCTCGGCGGAGCA
GCTTCGACAACAGAAGCTCCACAGCGACGAGACGAGTGAGGAGAAAATTT
ACATGAAGCTTTTTGAATCCTTGGCCGCCCAAGACATAGAAAATTCGAAC
GCAAACTTGGATGGCAAAGATGTGCCTGGTGCGGCCGGTAGGACCGCTGC
GGGAGGAAATGTCGCTGGAGGAAAGACAACACCACCTTCGCATTCGTCAC
CATCATAG

Synonyms

Publications