jgi.p|Nanoce1779_2|599594, mRNA_7667 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599594
Unique NamemRNA_7667
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1533
Alignment locationscaffold_21:24665..26197 +

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Properties
Property NameValue
TranscriptId599680
TrackFilteredModels2
ProteinId599594
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:24665..26197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599594gene_7667Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599594mRNA_7667-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7667CDS_7667Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7667 ID=mRNA_7667|Name=jgi.p|Nanoce1779_2|599594|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp
AGATTTGCATCCTCGTTCAGCACCCCAACAGCAATAGGATGCGGGCACGA
CTTGCCGTCACGTCTGCCTCTACGATTCTTTCCAACCCCCGCGCAATCCG
TTGTAGCAGCAGCAGAACAGCAGCAACCACAGCTACGTCCCCTCCGCAAC
AAGCCGAGGCCGGCAAGCCTCACGCGCACCTACGACAATATTTGGATGCC
TGGATGGGCAGCACGGGCACGCTCAACACCACCCGTAGCACCACCACTGG
CCCCGTCGCGTCCCACCAGCATCACCATCCCCACCCTTCTTCCGCCGGCC
ACCCCATCACTCTTACTGTGGCCGGCAAATCCTATCTGGTGCCTACATTG
CGCTTGCCTCGCGGTGTGGGCCCCCTGGACCTTCAAGCCGGTCTAAAAGC
CACCACTAGTTTGAGCGCTGGTTACTTTAAATGTGCCCCTATTGTGGTCG
ACCTAGGCGAATGGATGACTTCGCAGCCCTTACCACGGGGAGGGGTTCGG
ACAGAAGCGGCGGGAAAGGGAGGCGAGGTGTTAGACGCGGTCTTGTTAGG
GGAATTTGTGGAGACCTTGAGGGAGGCAGGATTGCAACCCGTGGGGATCG
CGAATGCCACAGCGACAGATATCCAAGCTGCAGCGATGGCTTTGGGTTTG
CCGTGTTTTATGGGAAGGCATGGTGGTAATGGTATTAATAGTAGTAATTC
ACCAGGTTCTGCTGCTGCTCCTGCTAATGCTGCTGCTCCTGCTGCTGCGA
TGACACCGTCGACTGCAAGACCAGCGCGAAAGCCCACCATGGCCGCCGCG
CATCTTCCCTCCACGTCCCCACGGTCAGAAGCGCCAAAACCATCAACTTC
CCCGACTTCGCCGAACGCAGCCACTATCTCCTCCCAGCCTTTGTCTCCAC
CCTCCCCCTCCGCTGCCCCGATACTCCCAACAAAGGTAAAAATGCGCAAT
AGGCAGCTTAAGCGACTCTCCCGTCATCTGCATGAGACCATTTACCAGTC
CTCTCTCTCCCCCTCCTTCCATTCCCTCCCAGGTAATCCAAGGCAGTGTC
CGTACTGGACAGCAAGTAGTGGCCGAAGGTGCTTCTCTCGTCATTCTGGG
ACATGTTAATTCCGGTGCAGAGGTGTCTGCGGATGGTGATATACACATTT
ATGGACGACTGTCTGGTAGGGCTCTGGCGGGGTTAGGGGGGGATGGGAAG
AGTAAGATTTTTGCGGGAAAGTTCAATGCGGAGCTGGTAGCGATTGCCGA
TGTATTCACGACATGCGATTTCGGGGAGGAGATGGAGGAGGGGAGGGAGG
GGGTTGTTTTGGGTGCGCCGACGAGCGTGAGTTTGAATGAGCGGGGAGGG
AGCTTGGTGTTCCATTCGTTTAAGGTCTAGGAAGGGAGTGACGGACAGAA
GGGATAACGAGAAAGGAGGAGGAGGATTGAAGAGCGTTTGTTCAGGCGCA
GAAATGCCGAGTCAAAAAGACACACTGAAAGGAGGGAGTAGGCGCAAAAA
AAGATAAAAACAGTGTAATAGCACATCGACTGA
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protein sequence of jgi.p|Nanoce1779_2|599594

>mRNA_7667-protein ID=mRNA_7667-protein|Name=jgi.p|Nanoce1779_2|599594|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MRPFTSPLSPPPSIPSQVIQGSVRTGQQVVAEGASLVILGHVNSGAEVSA
DGDIHIYGRLSGRALAGLGGDGKSKIFAGKFNAELVAIADVFTTCDFGEE
MEEGREGVVLGAPTSVSLNERGGSLVFHSFKV*
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mRNA from alignment at scaffold_21:24665..26197+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7667 ID=mRNA_7667|Name=jgi.p|Nanoce1779_2|599594|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp|location=Sequence derived from alignment at scaffold_21:24665..26197+ (Nannochloropsis oceanica)
AGATTTGCATCCTCGTTCAGCACCCCAACAGCAATAGGATGCGGGCACGA
CTTGCCGTCACGTCTGCCTCTACGATTCTTTCCAACCCCCGCGCAATCCG
TTGTAGCAGCAGCAGAACAGCAGCAACCACAGCTACGTCCCCTCCGCAAC
AAGCCGAGGCCGGCAAGCCTCACGCGCACCTACGACAATATTTGGATGCC
TGGATGGGCAGCACGGGCACGCTCAACACCACCCGTAGCACCACCACTGG
CCCCGTCGCGTCCCACCAGCATCACCATCCCCACCCTTCTTCCGCCGGCC
ACCCCATCACTCTTACTGTGGCCGGCAAATCCTATCTGGTGCCTACATTG
CGCTTGCCTCGCGGTGTGGGCCCCCTGGACCTTCAAGCCGGTCTAAAAGC
CACCACTAGTTTGAGCGCTGGTTACTTTAAATGTGCCCCTATTGTGGTCG
ACCTAGGCGAATGGATGACTTCGCAGCCCTTACCACGGGGAGGGGTTCGG
ACAGAAGCGGCGGGAAAGGGAGGCGAGGTGTTAGACGCGGTCTTGTTAGG
GGAATTTGTGGAGACCTTGAGGGAGGCAGGATTGCAACCCGTGGGGATCG
CGAATGCCACAGCGACAGATATCCAAGCTGCAGCGATGGCTTTGGGTTTG
CCGTGTTTTATGGGAAGGCATGGTGGTAATGGTATTAATAGTAGTAATTC
ACCAGGTTCTGCTGCTGCTCCTGCTAATGCTGCTGCTCCTGCTGCTGCGA
TGACACCGTCGACTGCAAGACCAGCGCGAAAGCCCACCATGGCCGCCGCG
CATCTTCCCTCCACGTCCCCACGGTCAGAAGCGCCAAAACCATCAACTTC
CCCGACTTCGCCGAACGCAGCCACTATCTCCTCCCAGCCTTTGTCTCCAC
CCTCCCCCTCCGCTGCCCCGATACTCCCAACAAAGGTAAAAATGCGCAAT
AGGCAGCTTAAGCGACTCTCCCGTCATCTGCATGAGACCATTTACCAGTC
CTCTCTCTCCCCCTCCTTCCATTCCCTCCCAGGTAATCCAAGGCAGTGTC
CGTACTGGACAGCAAGTAGTGGCCGAAGGTGCTTCTCTCGTCATTCTGGG
ACATGTTAATTCCGGTGCAGAGGTGTCTGCGGATGGTGATATACACATTT
ATGGACGACTGTCTGGTAGGGCTCTGGCGGGGTTAGGGGGGGATGGGAAG
AGTAAGATTTTTGCGGGAAAGTTCAATGCGGAGCTGGTAGCGATTGCCGA
TGTATTCACGACATGCGATTTCGGGGAGGAGATGGAGGAGGGGAGGGAGG
GGGTTGTTTTGGGTGCGCCGACGAGCGTGAGTTTGAATGAGCGGGGAGGG
AGCTTGGTGTTCCATTCGTTTAAGGTCTAGGAAGGGAGTGACGGACAGAA
GGGATAACGAGAAAGGAGGAGGAGGATTGAAGAGCGTTTGTTCAGGCGCA
GAAATGCCGAGTCAAAAAGACACACTGAAAGGAGGGAGTAGGCGCAAAAA
AAGATAAAAACAGTGTAATAGCACATCGACTGA
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Coding sequence (CDS) from alignment at scaffold_21:24665..26197+

>mRNA_7667 ID=mRNA_7667|Name=jgi.p|Nanoce1779_2|599594|organism=Nannochloropsis oceanica|type=CDS|length=399bp|location=Sequence derived from alignment at scaffold_21:24665..26197+ (Nannochloropsis oceanica)
ATGAGACCATTTACCAGTCCTCTCTCTCCCCCTCCTTCCATTCCCTCCCA
GGTAATCCAAGGCAGTGTCCGTACTGGACAGCAAGTAGTGGCCGAAGGTG
CTTCTCTCGTCATTCTGGGACATGTTAATTCCGGTGCAGAGGTGTCTGCG
GATGGTGATATACACATTTATGGACGACTGTCTGGTAGGGCTCTGGCGGG
GTTAGGGGGGGATGGGAAGAGTAAGATTTTTGCGGGAAAGTTCAATGCGG
AGCTGGTAGCGATTGCCGATGTATTCACGACATGCGATTTCGGGGAGGAG
ATGGAGGAGGGGAGGGAGGGGGTTGTTTTGGGTGCGCCGACGAGCGTGAG
TTTGAATGAGCGGGGAGGGAGCTTGGTGTTCCATTCGTTTAAGGTCTAG
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Synonyms
Publications