jgi.p|Nanoce1779_2|654178, mRNA_7663 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|654178
Unique Name	mRNA_7663
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2381
Alignment location	scaffold_21:10569..12949 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	654264
Track	FilteredModels2
ProteinId	654178

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:10569..12949 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|654178	gene_7663	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|654178	mRNA_7663-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7663	CDS_7663	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:10569..12949+
coding sequence from alignment at scaffold_21:10569..12949+

mRNA sequence

>mRNA_7663 ID=mRNA_7663|Name=jgi.p|Nanoce1779_2|654178|organism=Nannochloropsis oceanica|type=mRNA|length=2381bp
ATTAGGCCCGTTTGTTAACCTGAACCATGGACGAGCTCTTCCAAGCTCTC
CGGGCCGGGACGCGGTGTAAAAAAAAAACTGCCAAGACTTCTGCCGCGGC
TGCTGCGAATGGCAATGCTGCGGCCGCCCTCTCGGCCTCCATCTCTCCTT
ACAAGCACGCCTCGAAGCTTCCTTCTTCTTCTTCGTATGCCCCTGCCGCA
GTATCAACAACATCCACTTTGGATTTCTTTCGGTCGGCCGGCGCGATCAA
GGTCAAGGGTGTGGAGCAGGAGCACCAGAAGCGAAAGAGGCCGCGGCGGG
CACGTGAAGAGGACTCGGAGGAGGACGACGATGGAAAGGAGGAGATAAGC
AAGAAGTTGCTGGTCGAAGGCCAACATCAGAATGGCATGAAAAGCTCATC
AAATAAGAAGAAGAGGAAGAAGGGCGCAGCTACTGCTGCCGCGAATGGTG
CTGCTCCCCAAAGTGCTGCTGCCTCCACCTTGCAACTTTTCAACAAAGCA
GATAACCAAGAGGGCACGAAGAAGGGCGCACAGATTCCACAGGCGTCCTC
GTCCTCCTCCTTTTTCGATCAAGATAAAGACAGTGATGGAAACGATAGCG
ATGATTCATCCTCCCATTCCTCTTCCTCCCCCGGTCGGCATGGCCGCACC
CAAAATGACGATGATGAAATGCGCGCCTTCCGCCGCCGGCTTCGAATCAA
AGTCACCGGCGAAAACATTCCAGACTGCCTCCCCTCCTTCTCCCTCCTCC
CCTCCCTTCTCTCCTCCTCCTTTCTTTCCTCGTCTTCCTCCTCCCTCGTC
CAAACCCTCCTTCAGAACGTGGAGGCGTCGCACTGGAAGGAACCAACTCC
GATTCAGATGCAAGCCCTGCCCATCCTCCTCCTCGGTCGCGACCTACTTG
CTTCCTCCCCCACTGGCACGGGAAAGACGGCGGCATTCATTATCCCGACC
CTCCTTCGTCTAGGGGCGCCCATAAGCAAAGGAAGACCGAAGCACACAAA
GGAAGAAGCAGCCGCAGCAGGCGGAAACAGGAGGGGACCTCGGGCGTTGT
TTTTAGCCCCAACCCGCGAGCTCGCGGCGCAGATATACAGGGAAGTCGAA
CGTCTGTCGCAAGGCAAAAAGTTCAAAATTGGGCTCCTGTCCAAGGCCTT
GGCCGCCACCAGGGGGGAGGGCGGGAGGGAGGGAGGGGTATTGGGGGCGT
ACGACGTGTTGGTGGCGACCCCGATGAGGCTGGTGCAGGTGGTGAGGGAG
GGAGGGATAGACCTCGGCAATGTCCTGTCCGTCGTGCTGGACGAGGCGGA
CAAGCTGCTTGAGTTGGGGAGGGAGGGAAGGAGGGACGAGGAAGGGCATG
TCTTGCAACCGGACAAGAGCTTCTTGGGTCAAGTCGATGAGATCTTGGCC
GCCTGCTCCCACCCTCAGGTGCAGCGTGCCTTGTTCTCCGCCACCCTTCC
TCCCTTGATCGAGGATTTAGCACGGTCCATCTTACGGGACCCTCTCTCCG
TCTCCATCGGCCTTTATGCCGCTTCCCTAACCAACAACTACCAAGGAGGC
GCCGCCGTGCCTGACACGGTGACACAATCCCTTCTGTTTGTAGGGCGAGA
GGAAGGGAAACTCCTGGCCTTGCGACAGATTTTGCGCGAAGGTGTCCTAC
CCCCCGTGCTCGTGTTTCTCCAAACGAAAGAGCGGGCGCGTGAGCTGTAT
CATGAATTGTGCTACGACAATTTTAAGGTCGAGGTCATGCACGCCGACCG
CAGCCCCGAGCAGCGGGCCGAATTGTTGCATAAAGTGCGGACAGGGGAGG
TTTGGGTGCTTCTCTGCACGGATATATGCTCCCGGGGACTGGACCTAAGG
ACTGTCAACATGGTGATTAATTACGACTTGCCCTCGTCGTGTGTAGCGTA
CGTGCATCGGGTGGGGAGGACAGGGAGGGCTGGGAGGAAAGGAAGGGCGG
TGAGTTTCTGGACGGAGGGGGATATGCTGGAAGGAAAGGGCCTGCGTTCC
ATAGCCAATGTGATAAAATTGAGTGGGGGGGACGTACCGACGTGGATGAC
AGCGTTGAAACCTACCAACAGCAAGGGGATGGGGGGGAGACGGAAGGAGG
GAGGGAGGGAGGGAGGGAAGGGGCCTACATTTAGACGGGAAAGGATCTCG
ACAGGCACGGCCTGGGATCGGGAAAGGGCGAAGCGGAAGAGCAAGGTGTG
GGGGAAGGGGAAACACATAAAGGGGGAAGGAGGAGAGAGAGGAAGAGGAG
GGGAAGAAGGAAAGAGGGGGAGTGCATGAGAGTGGGAGGGAAAGAGAAGG
AGACGGAGGGGAAGGAGAGAATGGAAAGCTAAAGAAAAGCAAGGAACGAA
GAGCCAAAAGAATCAAAAGTACGAGCGACAA

protein sequence of jgi.p|Nanoce1779_2|654178

>mRNA_7663-protein ID=mRNA_7663-protein|Name=jgi.p|Nanoce1779_2|654178|organism=Nannochloropsis oceanica|type=polypeptide|length=751bp
MDELFQALRAGTRCKKKTAKTSAAAAANGNAAAALSASISPYKHASKLPS
SSSYAPAAVSTTSTLDFFRSAGAIKVKGVEQEHQKRKRPRRAREEDSEED
DDGKEEISKKLLVEGQHQNGMKSSSNKKKRKKGAATAAANGAAPQSAAAS
TLQLFNKADNQEGTKKGAQIPQASSSSSFFDQDKDSDGNDSDDSSSHSSS
SPGRHGRTQNDDDEMRAFRRRLRIKVTGENIPDCLPSFSLLPSLLSSSFL
SSSSSSLVQTLLQNVEASHWKEPTPIQMQALPILLLGRDLLASSPTGTGK
TAAFIIPTLLRLGAPISKGRPKHTKEEAAAAGGNRRGPRALFLAPTRELA
AQIYREVERLSQGKKFKIGLLSKALAATRGEGGREGGVLGAYDVLVATPM
RLVQVVREGGIDLGNVLSVVLDEADKLLELGREGRRDEEGHVLQPDKSFL
GQVDEILAACSHPQVQRALFSATLPPLIEDLARSILRDPLSVSIGLYAAS
LTNNYQGGAAVPDTVTQSLLFVGREEGKLLALRQILREGVLPPVLVFLQT
KERARELYHELCYDNFKVEVMHADRSPEQRAELLHKVRTGEVWVLLCTDI
CSRGLDLRTVNMVINYDLPSSCVAYVHRVGRTGRAGRKGRAVSFWTEGDM
LEGKGLRSIANVIKLSGGDVPTWMTALKPTNSKGMGGRRKEGGREGGKGP
TFRRERISTGTAWDRERAKRKSKVWGKGKHIKGEGGERGRGGEEGKRGSA
*

mRNA from alignment at scaffold_21:10569..12949+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7663 ID=mRNA_7663|Name=jgi.p|Nanoce1779_2|654178|organism=Nannochloropsis oceanica|type=mRNA|length=2381bp|location=Sequence derived from alignment at scaffold_21:10569..12949+ (Nannochloropsis oceanica)
ATTAGGCCCGTTTGTTAACCTGAACCATGGACGAGCTCTTCCAAGCTCTC
CGGGCCGGGACGCGGTGTAAAAAAAAAACTGCCAAGACTTCTGCCGCGGC
TGCTGCGAATGGCAATGCTGCGGCCGCCCTCTCGGCCTCCATCTCTCCTT
ACAAGCACGCCTCGAAGCTTCCTTCTTCTTCTTCGTATGCCCCTGCCGCA
GTATCAACAACATCCACTTTGGATTTCTTTCGGTCGGCCGGCGCGATCAA
GGTCAAGGGTGTGGAGCAGGAGCACCAGAAGCGAAAGAGGCCGCGGCGGG
CACGTGAAGAGGACTCGGAGGAGGACGACGATGGAAAGGAGGAGATAAGC
AAGAAGTTGCTGGTCGAAGGCCAACATCAGAATGGCATGAAAAGCTCATC
AAATAAGAAGAAGAGGAAGAAGGGCGCAGCTACTGCTGCCGCGAATGGTG
CTGCTCCCCAAAGTGCTGCTGCCTCCACCTTGCAACTTTTCAACAAAGCA
GATAACCAAGAGGGCACGAAGAAGGGCGCACAGATTCCACAGGCGTCCTC
GTCCTCCTCCTTTTTCGATCAAGATAAAGACAGTGATGGAAACGATAGCG
ATGATTCATCCTCCCATTCCTCTTCCTCCCCCGGTCGGCATGGCCGCACC
CAAAATGACGATGATGAAATGCGCGCCTTCCGCCGCCGGCTTCGAATCAA
AGTCACCGGCGAAAACATTCCAGACTGCCTCCCCTCCTTCTCCCTCCTCC
CCTCCCTTCTCTCCTCCTCCTTTCTTTCCTCGTCTTCCTCCTCCCTCGTC
CAAACCCTCCTTCAGAACGTGGAGGCGTCGCACTGGAAGGAACCAACTCC
GATTCAGATGCAAGCCCTGCCCATCCTCCTCCTCGGTCGCGACCTACTTG
CTTCCTCCCCCACTGGCACGGGAAAGACGGCGGCATTCATTATCCCGACC
CTCCTTCGTCTAGGGGCGCCCATAAGCAAAGGAAGACCGAAGCACACAAA
GGAAGAAGCAGCCGCAGCAGGCGGAAACAGGAGGGGACCTCGGGCGTTGT
TTTTAGCCCCAACCCGCGAGCTCGCGGCGCAGATATACAGGGAAGTCGAA
CGTCTGTCGCAAGGCAAAAAGTTCAAAATTGGGCTCCTGTCCAAGGCCTT
GGCCGCCACCAGGGGGGAGGGCGGGAGGGAGGGAGGGGTATTGGGGGCGT
ACGACGTGTTGGTGGCGACCCCGATGAGGCTGGTGCAGGTGGTGAGGGAG
GGAGGGATAGACCTCGGCAATGTCCTGTCCGTCGTGCTGGACGAGGCGGA
CAAGCTGCTTGAGTTGGGGAGGGAGGGAAGGAGGGACGAGGAAGGGCATG
TCTTGCAACCGGACAAGAGCTTCTTGGGTCAAGTCGATGAGATCTTGGCC
GCCTGCTCCCACCCTCAGGTGCAGCGTGCCTTGTTCTCCGCCACCCTTCC
TCCCTTGATCGAGGATTTAGCACGGTCCATCTTACGGGACCCTCTCTCCG
TCTCCATCGGCCTTTATGCCGCTTCCCTAACCAACAACTACCAAGGAGGC
GCCGCCGTGCCTGACACGGTGACACAATCCCTTCTGTTTGTAGGGCGAGA
GGAAGGGAAACTCCTGGCCTTGCGACAGATTTTGCGCGAAGGTGTCCTAC
CCCCCGTGCTCGTGTTTCTCCAAACGAAAGAGCGGGCGCGTGAGCTGTAT
CATGAATTGTGCTACGACAATTTTAAGGTCGAGGTCATGCACGCCGACCG
CAGCCCCGAGCAGCGGGCCGAATTGTTGCATAAAGTGCGGACAGGGGAGG
TTTGGGTGCTTCTCTGCACGGATATATGCTCCCGGGGACTGGACCTAAGG
ACTGTCAACATGGTGATTAATTACGACTTGCCCTCGTCGTGTGTAGCGTA
CGTGCATCGGGTGGGGAGGACAGGGAGGGCTGGGAGGAAAGGAAGGGCGG
TGAGTTTCTGGACGGAGGGGGATATGCTGGAAGGAAAGGGCCTGCGTTCC
ATAGCCAATGTGATAAAATTGAGTGGGGGGGACGTACCGACGTGGATGAC
AGCGTTGAAACCTACCAACAGCAAGGGGATGGGGGGGAGACGGAAGGAGG
GAGGGAGGGAGGGAGGGAAGGGGCCTACATTTAGACGGGAAAGGATCTCG
ACAGGCACGGCCTGGGATCGGGAAAGGGCGAAGCGGAAGAGCAAGGTGTG
GGGGAAGGGGAAACACATAAAGGGGGAAGGAGGAGAGAGAGGAAGAGGAG
GGGAAGAAGGAAAGAGGGGGAGTGCATGAGAGTGGGAGGGAAAGAGAAGG
AGACGGAGGGGAAGGAGAGAATGGAAAGCTAAAGAAAAGCAAGGAACGAA
GAGCCAAAAGAATCAAAAGTACGAGCGACAA

Coding sequence (CDS) from alignment at scaffold_21:10569..12949+

>mRNA_7663 ID=mRNA_7663|Name=jgi.p|Nanoce1779_2|654178|organism=Nannochloropsis oceanica|type=CDS|length=2253bp|location=Sequence derived from alignment at scaffold_21:10569..12949+ (Nannochloropsis oceanica)
ATGGACGAGCTCTTCCAAGCTCTCCGGGCCGGGACGCGGTGTAAAAAAAA
AACTGCCAAGACTTCTGCCGCGGCTGCTGCGAATGGCAATGCTGCGGCCG
CCCTCTCGGCCTCCATCTCTCCTTACAAGCACGCCTCGAAGCTTCCTTCT
TCTTCTTCGTATGCCCCTGCCGCAGTATCAACAACATCCACTTTGGATTT
CTTTCGGTCGGCCGGCGCGATCAAGGTCAAGGGTGTGGAGCAGGAGCACC
AGAAGCGAAAGAGGCCGCGGCGGGCACGTGAAGAGGACTCGGAGGAGGAC
GACGATGGAAAGGAGGAGATAAGCAAGAAGTTGCTGGTCGAAGGCCAACA
TCAGAATGGCATGAAAAGCTCATCAAATAAGAAGAAGAGGAAGAAGGGCG
CAGCTACTGCTGCCGCGAATGGTGCTGCTCCCCAAAGTGCTGCTGCCTCC
ACCTTGCAACTTTTCAACAAAGCAGATAACCAAGAGGGCACGAAGAAGGG
CGCACAGATTCCACAGGCGTCCTCGTCCTCCTCCTTTTTCGATCAAGATA
AAGACAGTGATGGAAACGATAGCGATGATTCATCCTCCCATTCCTCTTCC
TCCCCCGGTCGGCATGGCCGCACCCAAAATGACGATGATGAAATGCGCGC
CTTCCGCCGCCGGCTTCGAATCAAAGTCACCGGCGAAAACATTCCAGACT
GCCTCCCCTCCTTCTCCCTCCTCCCCTCCCTTCTCTCCTCCTCCTTTCTT
TCCTCGTCTTCCTCCTCCCTCGTCCAAACCCTCCTTCAGAACGTGGAGGC
GTCGCACTGGAAGGAACCAACTCCGATTCAGATGCAAGCCCTGCCCATCC
TCCTCCTCGGTCGCGACCTACTTGCTTCCTCCCCCACTGGCACGGGAAAG
ACGGCGGCATTCATTATCCCGACCCTCCTTCGTCTAGGGGCGCCCATAAG
CAAAGGAAGACCGAAGCACACAAAGGAAGAAGCAGCCGCAGCAGGCGGAA
ACAGGAGGGGACCTCGGGCGTTGTTTTTAGCCCCAACCCGCGAGCTCGCG
GCGCAGATATACAGGGAAGTCGAACGTCTGTCGCAAGGCAAAAAGTTCAA
AATTGGGCTCCTGTCCAAGGCCTTGGCCGCCACCAGGGGGGAGGGCGGGA
GGGAGGGAGGGGTATTGGGGGCGTACGACGTGTTGGTGGCGACCCCGATG
AGGCTGGTGCAGGTGGTGAGGGAGGGAGGGATAGACCTCGGCAATGTCCT
GTCCGTCGTGCTGGACGAGGCGGACAAGCTGCTTGAGTTGGGGAGGGAGG
GAAGGAGGGACGAGGAAGGGCATGTCTTGCAACCGGACAAGAGCTTCTTG
GGTCAAGTCGATGAGATCTTGGCCGCCTGCTCCCACCCTCAGGTGCAGCG
TGCCTTGTTCTCCGCCACCCTTCCTCCCTTGATCGAGGATTTAGCACGGT
CCATCTTACGGGACCCTCTCTCCGTCTCCATCGGCCTTTATGCCGCTTCC
CTAACCAACAACTACCAAGGAGGCGCCGCCGTGCCTGACACGGTGACACA
ATCCCTTCTGTTTGTAGGGCGAGAGGAAGGGAAACTCCTGGCCTTGCGAC
AGATTTTGCGCGAAGGTGTCCTACCCCCCGTGCTCGTGTTTCTCCAAACG
AAAGAGCGGGCGCGTGAGCTGTATCATGAATTGTGCTACGACAATTTTAA
GGTCGAGGTCATGCACGCCGACCGCAGCCCCGAGCAGCGGGCCGAATTGT
TGCATAAAGTGCGGACAGGGGAGGTTTGGGTGCTTCTCTGCACGGATATA
TGCTCCCGGGGACTGGACCTAAGGACTGTCAACATGGTGATTAATTACGA
CTTGCCCTCGTCGTGTGTAGCGTACGTGCATCGGGTGGGGAGGACAGGGA
GGGCTGGGAGGAAAGGAAGGGCGGTGAGTTTCTGGACGGAGGGGGATATG
CTGGAAGGAAAGGGCCTGCGTTCCATAGCCAATGTGATAAAATTGAGTGG
GGGGGACGTACCGACGTGGATGACAGCGTTGAAACCTACCAACAGCAAGG
GGATGGGGGGGAGACGGAAGGAGGGAGGGAGGGAGGGAGGGAAGGGGCCT
ACATTTAGACGGGAAAGGATCTCGACAGGCACGGCCTGGGATCGGGAAAG
GGCGAAGCGGAAGAGCAAGGTGTGGGGGAAGGGGAAACACATAAAGGGGG
AAGGAGGAGAGAGAGGAAGAGGAGGGGAAGAAGGAAAGAGGGGGAGTGCA
TGA

Synonyms

Publications