jgi.p|Nanoce1779_2|599568, mRNA_7661 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599568
Unique NamemRNA_7661
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length702
Alignment locationscaffold_21:4047..4766 +

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Properties
Property NameValue
TranscriptId599654
TrackFilteredModels2
ProteinId599568
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:4047..4766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599568gene_7661Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599568mRNA_7661-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7661CDS_7661Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7661 ID=mRNA_7661|Name=jgi.p|Nanoce1779_2|599568|organism=Nannochloropsis oceanica|type=mRNA|length=702bp
GGGCCTTCTCCTTCTCCTCCTCCTCCTTATCCTCCTTCATTGTCATCTTT
CACTCCACCACCTCCTCCACTTCCATCCTCCTCCTCCGCCTTGCCCTATC
CTCCACCACCATTCAACCCCTCTCAACAAAAACACTCCGACGATTTAACT
ATTCCTCCTTTCCCTCCTCCACCCCCTCCTCCTGGTTCCGCTCTTACTGG
AGCAGGAGGTCGAGGGAGAGGAGGTGATGGTCCTGACGCGGGTCTTCGCC
GGCGATACGCCCCTCCTCCCTCTTATTCCTCCAGCGGCCGAGGAATGATG
ATGCCACCGCACCACCAGTACCACCACCAGCAGCAGCAGCAGCAGCAGCA
GGTTCAAAGAAAACCTCAGCGAGACACAGCAAGTCGCTTGAAAGACGCAA
GGGCCATCGAAAAAGCCATTGTAGAGCTGGGACAGACGTTCAGTAAGATG
GCGGGGCTGGTGGCGGCTCAGGGGGAAGTGGTGATGAGGATAGACGACGA
CATGGAAATGGCCTTGGAAGATGTGCGGAAGGGACACACAGAGATGGAGA
ATTACTTGAGGATCGTGCGTGGGAACAGGGCGGTGATTATCAAGGTGTTC
GTGGTGCTGATTGTATTCATTTTACTTTTTGTCCGATATTTCTAGGGTTT
TGTTCGCGATTAATCAAATAAAAGTATAAATAGATCAAGCGAAATTTGGT
AT
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protein sequence of jgi.p|Nanoce1779_2|599568

>mRNA_7661-protein ID=mRNA_7661-protein|Name=jgi.p|Nanoce1779_2|599568|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MMMPPHHQYHHQQQQQQQQVQRKPQRDTASRLKDARAIEKAIVELGQTFS
KMAGLVAAQGEVVMRIDDDMEMALEDVRKGHTEMENYLRIVRGNRAVIIK
VFVVLIVFILLFVRYF*
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mRNA from alignment at scaffold_21:4047..4766+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7661 ID=mRNA_7661|Name=jgi.p|Nanoce1779_2|599568|organism=Nannochloropsis oceanica|type=mRNA|length=720bp|location=Sequence derived from alignment at scaffold_21:4047..4766+ (Nannochloropsis oceanica)
GGGCCTTCTCCTTCTCCTCCTCCTCCTTATCCTCCTTCATTGTCATCTTT
CACTCCACCACCTCCTCCACTTCCATCCTCCTCCTCCGCCTTGCCCTATC
CTCCACCACCCCCTCCTCCACCACCACCATTCAACCCCTCTCAACAAAAA
CACTCCGACGATTTAACTATTCCTCCTTTCCCTCCTCCACCCCCTCCTCC
TGGTTCCGCTCTTACTGGAGCAGGAGGTCGAGGGAGAGGAGGTGATGGTC
CTGACGCGGGTCTTCGCCGGCGATACGCCCCTCCTCCCTCTTATTCCTCC
AGCGGCCGAGGAATGATGATGCCACCGCACCACCAGTACCACCACCAGCA
GCAGCAGCAGCAGCAGCAGGTTCAAAGAAAACCTCAGCGAGACACAGCAA
GTCGCTTGAAAGACGCAAGGGCCATCGAAAAAGCCATTGTAGAGCTGGGA
CAGACGTTCAGTAAGATGGCGGGGCTGGTGGCGGCTCAGGGGGAAGTGGT
GATGAGGATAGACGACGACATGGAAATGGCCTTGGAAGATGTGCGGAAGG
GACACACAGAGATGGAGAATTACTTGAGGATCGTGCGTGGGAACAGGGCG
GTGATTATCAAGGTGTTCGTGGTGCTGATTGTATTCATTTTACTTTTTGT
CCGATATTTCTAGGGTTTTGTTCGCGATTAATCAAATAAAAGTATAAATA
GATCAAGCGAAATTTGGTAT
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Coding sequence (CDS) from alignment at scaffold_21:4047..4766+

>mRNA_7661 ID=mRNA_7661|Name=jgi.p|Nanoce1779_2|599568|organism=Nannochloropsis oceanica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_21:4047..4766+ (Nannochloropsis oceanica)
ATGATGATGCCACCGCACCACCAGTACCACCACCAGCAGCAGCAGCAGCA
GCAGCAGGTTCAAAGAAAACCTCAGCGAGACACAGCAAGTCGCTTGAAAG
ACGCAAGGGCCATCGAAAAAGCCATTGTAGAGCTGGGACAGACGTTCAGT
AAGATGGCGGGGCTGGTGGCGGCTCAGGGGGAAGTGGTGATGAGGATAGA
CGACGACATGGAAATGGCCTTGGAAGATGTGCGGAAGGGACACACAGAGA
TGGAGAATTACTTGAGGATCGTGCGTGGGAACAGGGCGGTGATTATCAAG
GTGTTCGTGGTGCTGATTGTATTCATTTTACTTTTTGTCCGATATTTCTA
G
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Synonyms
Publications