jgi.p|Nanoce1779_2|652879, mRNA_766 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|652879
Unique NamemRNA_766
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length954
Alignment locationscaffold_2:387551..388504 -

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Properties
Property NameValue
TranscriptId652965
TrackFilteredModels2
ProteinId652879
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:387551..388504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|652879gene_766Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|652879mRNA_766-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_766CDS_766Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_766 ID=mRNA_766|Name=jgi.p|Nanoce1779_2|652879|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
TACCCCCCACACGACGACCACCCTCTCACCCCACACCCACACACGTACTC
ACACACATACAGGGAAGTATGCGCAGGGCTCAGGAGGAGGACGACGGCCC
GGACCATCACCAAGCCTCTCCCAAACGACGTCGCCTTCACCACGACCACA
ACGACGGCCACAACGACGGCCAAGAGCAGGGACCCCCTCAGCATGGCCGG
GGCAACCGCACCCGCCGGGCCACCTTCGCTCTTGGCAGCCAGTTCAACAA
CGACACACCGCCAAATGAAGACCAACCTCGCTTTCGTCCTGGTCGTCCAC
GTGGGTCCACCAACGTTGCCGGCCGCCCCCGCGGACGACCTACATCTCAG
CAGCACCGATAGCAAGCTCACCGCCGAGCCAAACAGCATCGTCAAGCCGC
ATATCGGGAAGGCATTCGCCAAAAACATGTTGCACACGCTGCCCAACAAA
TCCGCGCTGCTCTTGCAGCCGAACAAGCTCGCGCGCCACAAGAAGAAATC
ACCCCCGCCCCATTCACACCAGCCCCCCGACCCCTTGCGGCGCCGCATCG
CACGCACGCGCCTGGACTTTCGCCACCGTCCGTGCCTCCCTTTGCTTGAG
AACATGCGCATTCACGCAGCTCGCCTGGCTGGCCCACCTGACCACTCGGG
TAGTTCGCCGACTTCCTTCTCGCCATTGGGGAAGGGCAGCCCCCTGCCCT
TCCAGACCCGCTACACTCCCCGCATGCAACGCCAGCGCCTGCTTCTCGCC
ACAAGCATTTGCTGATCTCGGCCTTCACGCTCCCCGAAACGCCTCATAAA
CCATATCTACGGCTCCTTCGACGAACCCGCCGACCGAGACCACGACTACC
TGTCTTCGCCCACGGCCAGCTTTACGTCGCTCTGTCCAGGGTTGGGAACC
CCAACAACATCACCATTATGGTCGCCCAATGTGTCGTACACTGAAATTTT
CCAA
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protein sequence of jgi.p|Nanoce1779_2|652879

>mRNA_766-protein ID=mRNA_766-protein|Name=jgi.p|Nanoce1779_2|652879|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
YPPHDDHPLTPHPHTYSHTYREVCAGLRRRTTARTITKPLPNDVAFTTTT
TTATTTAKSRDPLSMAGATAPAGPPSLLAASSTTTHRQMKTNLAFVLVVH
VGPPTLPAAPADDLHLSSTDSKLTAEPNSIVKPHIGKAFAKNMLHTLPNK
SALLLQPNKLARHKKKSPPPHSHQPPDPLRRRIARTRLDFRHRPCLPLLE
NMRIHAARLAGPPDHSGSSPTSFSPLGKGSPLPFQTRYTPRMQRQRLLLA
TSIC*
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mRNA from alignment at scaffold_2:387551..388504-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_766 ID=mRNA_766|Name=jgi.p|Nanoce1779_2|652879|organism=Nannochloropsis oceanica|type=mRNA|length=954bp|location=Sequence derived from alignment at scaffold_2:387551..388504- (Nannochloropsis oceanica)
TACCCCCCACACGACGACCACCCTCTCACCCCACACCCACACACGTACTC
ACACACATACAGGGAAGTATGCGCAGGGCTCAGGAGGAGGACGACGGCCC
GGACCATCACCAAGCCTCTCCCAAACGACGTCGCCTTCACCACGACCACA
ACGACGGCCACAACGACGGCCAAGAGCAGGGACCCCCTCAGCATGGCCGG
GGCAACCGCACCCGCCGGGCCACCTTCGCTCTTGGCAGCCAGTTCAACAA
CGACACACCGCCAAATGAAGACCAACCTCGCTTTCGTCCTGGTCGTCCAC
GTGGGTCCACCAACGTTGCCGGCCGCCCCCGCGGACGACCTACATCTCAG
CAGCACCGATAGCAAGCTCACCGCCGAGCCAAACAGCATCGTCAAGCCGC
ATATCGGGAAGGCATTCGCCAAAAACATGTTGCACACGCTGCCCAACAAA
TCCGCGCTGCTCTTGCAGCCGAACAAGCTCGCGCGCCACAAGAAGAAATC
ACCCCCGCCCCATTCACACCAGCCCCCCGACCCCTTGCGGCGCCGCATCG
CACGCACGCGCCTGGACTTTCGCCACCGTCCGTGCCTCCCTTTGCTTGAG
AACATGCGCATTCACGCAGCTCGCCTGGCTGGCCCACCTGACCACTCGGG
TAGTTCGCCGACTTCCTTCTCGCCATTGGGGAAGGGCAGCCCCCTGCCCT
TCCAGACCCGCTACACTCCCCGCATGCAACGCCAGCGCCTGCTTCTCGCC
ACAAGCATTTGCTGATCTCGGCCTTCACGCTCCCCGAAACGCCTCATAAA
CCATATCTACGGCTCCTTCGACGAACCCGCCGACCGAGACCACGACTACC
TGTCTTCGCCCACGGCCAGCTTTACGTCGCTCTGTCCAGGGTTGGGAACC
CCAACAACATCACCATTATGGTCGCCCAATGTGTCGTACACTGAAATTTT
CCAA
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Coding sequence (CDS) from alignment at scaffold_2:387551..388504-

>mRNA_766 ID=mRNA_766|Name=jgi.p|Nanoce1779_2|652879|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at scaffold_2:387551..388504- (Nannochloropsis oceanica)
TACCCCCCACACGACGACCACCCTCTCACCCCACACCCACACACGTACTC
ACACACATACAGGGAAGTATGCGCAGGGCTCAGGAGGAGGACGACGGCCC
GGACCATCACCAAGCCTCTCCCAAACGACGTCGCCTTCACCACGACCACA
ACGACGGCCACAACGACGGCCAAGAGCAGGGACCCCCTCAGCATGGCCGG
GGCAACCGCACCCGCCGGGCCACCTTCGCTCTTGGCAGCCAGTTCAACAA
CGACACACCGCCAAATGAAGACCAACCTCGCTTTCGTCCTGGTCGTCCAC
GTGGGTCCACCAACGTTGCCGGCCGCCCCCGCGGACGACCTACATCTCAG
CAGCACCGATAGCAAGCTCACCGCCGAGCCAAACAGCATCGTCAAGCCGC
ATATCGGGAAGGCATTCGCCAAAAACATGTTGCACACGCTGCCCAACAAA
TCCGCGCTGCTCTTGCAGCCGAACAAGCTCGCGCGCCACAAGAAGAAATC
ACCCCCGCCCCATTCACACCAGCCCCCCGACCCCTTGCGGCGCCGCATCG
CACGCACGCGCCTGGACTTTCGCCACCGTCCGTGCCTCCCTTTGCTTGAG
AACATGCGCATTCACGCAGCTCGCCTGGCTGGCCCACCTGACCACTCGGG
TAGTTCGCCGACTTCCTTCTCGCCATTGGGGAAGGGCAGCCCCCTGCCCT
TCCAGACCCGCTACACTCCCCGCATGCAACGCCAGCGCCTGCTTCTCGCC
ACAAGCATTTGCTGA
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Synonyms
Publications