jgi.p|Nanoce1779_2|641310, mRNA_7659 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|641310
Unique NamemRNA_7659
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length663
Alignment locationscaffold_21:1237..2481 -

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Properties
Property NameValue
TranscriptId641396
TrackFilteredModels2
ProteinId641310
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:1237..2481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641310gene_7659Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641310mRNA_7659-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7659CDS_7659Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7659 ID=mRNA_7659|Name=jgi.p|Nanoce1779_2|641310|organism=Nannochloropsis oceanica|type=mRNA|length=663bp
ATGAAAGGCAATTGGGAGACGGCCCTGGTAGGCAATCGGCTGATACTCGT
TCCCTATCGAAAGAAATATGTAGCCCGCTACCATGCCTGGATGCAAGACT
CTTTTCTGCAAGAAATGACGGCGTCGGTACCCTTGAGCTTGGAAGAAGAG
TACGCTATGCAGGCCTCCTGGCGTGACGACGAGAAGAAATGCACCTTCAT
CCTCCTCGACAAAGCCAATCCCTCCTCCCTCCCGCCGTCCTTCTCAACAT
CCTCCATGGTGGGTGATGTGAATCTCTTCTTTAATGATCAAGACAACGAT
TTGTCAATAGCAGAAATAGAGATAATGATTGCGGAGCCCAGGGCACGAGG
GAAGGGGATGGGGAAGGAGGGGGTAGGGATGATGATGCGCTATGCAGTTG
ACAAGTTGGGGGTAAAAAGATTTTATTGCAAGATTTCGGAGGACAACTTG
ACGAGCCTGCGGATGTTTGAGGGCTTGGGGTACGTTCGTGTGGCATACGT
AGCGGCCTTCAAAGAAATCGAGTTGGAGTTTCTCATCAAGGACAACGATG
GCTGGCCAGAAAAGTTTGCGGCACTAAAAGAGACAGCTGGAGGGGCTAAA
ATTCAGGAGATGGTACAGTATGAGGAGATGGAGGAGGGGGAAGAGGGGAA
GGGGATTGGCTGA
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protein sequence of jgi.p|Nanoce1779_2|641310

>mRNA_7659-protein ID=mRNA_7659-protein|Name=jgi.p|Nanoce1779_2|641310|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MKGNWETALVGNRLILVPYRKKYVARYHAWMQDSFLQEMTASVPLSLEEE
YAMQASWRDDEKKCTFILLDKANPSSLPPSFSTSSMVGDVNLFFNDQDND
LSIAEIEIMIAEPRARGKGMGKEGVGMMMRYAVDKLGVKRFYCKISEDNL
TSLRMFEGLGYVRVAYVAAFKEIELEFLIKDNDGWPEKFAALKETAGGAK
IQEMVQYEEMEEGEEGKGIG*
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mRNA from alignment at scaffold_21:1237..2481-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7659 ID=mRNA_7659|Name=jgi.p|Nanoce1779_2|641310|organism=Nannochloropsis oceanica|type=mRNA|length=1245bp|location=Sequence derived from alignment at scaffold_21:1237..2481- (Nannochloropsis oceanica)
ATGAAAGGCAATTGGGAGACGGCCCTGGTAAGGATAAGGAGTGACGGTTG
CTTTTGTGACTTTTGTTGTGAGGGCATGGAGGAAATGGGTACAGCTGGAT
CATAGGAATGCCTAAACAAATTTATGGTCCTTCATGATATGCCGGCTTTT
AATGCGTAAATATAGGCAGCAAGGCAGGAGGCACCCTCACACTTCTTTTC
ACCATCCCACCCATCGATCTCCTCCCCTGCTCTCCCCCTCCCACATGTCC
AGGTAGGCAATCGGCTGATACTCGTTCCCTATCGAAAGAAATATGTAGCC
CGCTACCATGCCTGGATGCAAGACTCTTTTCTGCAAGAAATGACGGCGTC
GGTACCCTTGAGCTTGGAAGAAGAGTACGCTATGCAGGCCTCCTGGCGTG
ACGACGAGAAGAGTAAGTCATAGAGTCCTCGGGAGATTGATGATTTTTTT
GGGTTCTTTTCCTTTCACAAAATTCTTACACATTATTTCGTTCTGTTGTT
CAGCTCATCCACATTTTTACCCTTCCCTCCCAATCTTTCTCCATCCCTCC
TTCGTTTCCTTCCTCACCGCAGAATGCACCTTCATCCTCCTCGACAAAGC
CAATCCCTCCTCCCTCCCGCCGTCCTTCTCAACATCCTCCATGGTGGGTG
ATGTGAATCTCTTCTTTAATGATCAAGACAACGATTTGTCAATAGCAGAA
ATAGAGATAATGATTGCGGAGCCCAGGGCACGAGGGAAGGGGATGGGGAA
GGAGGGGGTAGGGATGATGATGCGCTATGCAGTTGACAAGTTGGGGGTAA
AAAGATTTTATTGCAAGATTTCGGAGGACAACTTGACGAGCCTGCGGATG
TTTGAGGGGTAGGTGTCACGCGTAGGATGAGGGAAGGAAGGGTGGGAGGC
AGGGAGGGAGGAAGGAATTGGAGAAGGGGTAATGCAGCATGTCCTTTTCA
TCAACGGGACCAAGATAACGCTTGCAGACTCTCCGTTCTCTTTTTACACA
TCTCTCACGTTTTGATGGCCCCCTTAAAATTTCTCTTTCCTCTCTTCCCT
GAAAGCTTGGGGTACGTTCGTGTGGCATACGTAGCGGCCTTCAAAGAAAT
CGAGTTGGAGTTTCTCATCAAGGACAACGATGGCTGGCCAGAAAAGTTTG
CGGCACTAAAAGAGACAGCTGGAGGGGCTAAAATTCAGGAGATGGTACAG
TATGAGGAGATGGAGGAGGGGGAAGAGGGGAAGGGGATTGGCTGA
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Coding sequence (CDS) from alignment at scaffold_21:1237..2481-

>mRNA_7659 ID=mRNA_7659|Name=jgi.p|Nanoce1779_2|641310|organism=Nannochloropsis oceanica|type=CDS|length=2652bp|location=Sequence derived from alignment at scaffold_21:1237..2481- (Nannochloropsis oceanica)
CTTGGGGTACGTTCGTGTGGCATACGTAGCGGCCTTCAAAGAAATCGAGT
TGGAGTTTCTCATCAAGGACAACGATGGCTGGCCAGAAAAGTTTGCGGCA
CTAAAAGAGACAGCTGGAGGGGCTAAAATTCAGGAGATGGTACAGTATGA
GGAGATGGAGGAGGGGGAAGAGGGGAAGGGGATTGGCTGAAATGCACCTT
CATCCTCCTCGACAAAGCCAATCCCTCCTCCCTCCCGCCGTCCTTCTCAA
CATCCTCCATGGTGGGTGATGTGAATCTCTTCTTTAATGATCAAGACAAC
GATTTGTCAATAGCAGAAATAGAGATAATGATTGCGGAGCCCAGGGCACG
AGGGAAGGGGATGGGGAAGGAGGGGGTAGGGATGATGATGCGCTATGCAG
TTGACAAGTTGGGGGTAAAAAGATTTTATTGCAAGATTTCGGAGGACAAC
TTGACGAGCCTGCGGATGTTTGAGGGGTAGGCAATCGGCTGATACTCGTT
CCCTATCGAAAGAAATATGTAGCCCGCTACCATGCCTGGATGCAAGACTC
TTTTCTGCAAGAAATGACGGCGTCGGTACCCTTGAGCTTGGAAGAAGAGT
ACGCTATGCAGGCCTCCTGGCGTGACGACGAGAAGAATGAAAGGCAATTG
GGAGACGGCCCTGCTTGGGGTACGTTCGTGTGGCATACGTAGCGGCCTTC
AAAGAAATCGAGTTGGAGTTTCTCATCAAGGACAACGATGGCTGGCCAGA
AAAGTTTGCGGCACTAAAAGAGACAGCTGGAGGGGCTAAAATTCAGGAGA
TGGTACAGTATGAGGAGATGGAGGAGGGGGAAGAGGGGAAGGGGATTGGC
TGAAATGCACCTTCATCCTCCTCGACAAAGCCAATCCCTCCTCCCTCCCG
CCGTCCTTCTCAACATCCTCCATGGTGGGTGATGTGAATCTCTTCTTTAA
TGATCAAGACAACGATTTGTCAATAGCAGAAATAGAGATAATGATTGCGG
AGCCCAGGGCACGAGGGAAGGGGATGGGGAAGGAGGGGGTAGGGATGATG
ATGCGCTATGCAGTTGACAAGTTGGGGGTAAAAAGATTTTATTGCAAGAT
TTCGGAGGACAACTTGACGAGCCTGCGGATGTTTGAGGGGTAGGCAATCG
GCTGATACTCGTTCCCTATCGAAAGAAATATGTAGCCCGCTACCATGCCT
GGATGCAAGACTCTTTTCTGCAAGAAATGACGGCGTCGGTACCCTTGAGC
TTGGAAGAAGAGTACGCTATGCAGGCCTCCTGGCGTGACGACGAGAAGAA
TGAAAGGCAATTGGGAGACGGCCCTGCTTGGGGTACGTTCGTGTGGCATA
CGTAGCGGCCTTCAAAGAAATCGAGTTGGAGTTTCTCATCAAGGACAACG
ATGGCTGGCCAGAAAAGTTTGCGGCACTAAAAGAGACAGCTGGAGGGGCT
AAAATTCAGGAGATGGTACAGTATGAGGAGATGGAGGAGGGGGAAGAGGG
GAAGGGGATTGGCTGAAATGCACCTTCATCCTCCTCGACAAAGCCAATCC
CTCCTCCCTCCCGCCGTCCTTCTCAACATCCTCCATGGTGGGTGATGTGA
ATCTCTTCTTTAATGATCAAGACAACGATTTGTCAATAGCAGAAATAGAG
ATAATGATTGCGGAGCCCAGGGCACGAGGGAAGGGGATGGGGAAGGAGGG
GGTAGGGATGATGATGCGCTATGCAGTTGACAAGTTGGGGGTAAAAAGAT
TTTATTGCAAGATTTCGGAGGACAACTTGACGAGCCTGCGGATGTTTGAG
GGGTAGGCAATCGGCTGATACTCGTTCCCTATCGAAAGAAATATGTAGCC
CGCTACCATGCCTGGATGCAAGACTCTTTTCTGCAAGAAATGACGGCGTC
GGTACCCTTGAGCTTGGAAGAAGAGTACGCTATGCAGGCCTCCTGGCGTG
ACGACGAGAAGAATGAAAGGCAATTGGGAGACGGCCCTGCTTGGGGTACG
TTCGTGTGGCATACGTAGCGGCCTTCAAAGAAATCGAGTTGGAGTTTCTC
ATCAAGGACAACGATGGCTGGCCAGAAAAGTTTGCGGCACTAAAAGAGAC
AGCTGGAGGGGCTAAAATTCAGGAGATGGTACAGTATGAGGAGATGGAGG
AGGGGGAAGAGGGGAAGGGGATTGGCTGAAATGCACCTTCATCCTCCTCG
ACAAAGCCAATCCCTCCTCCCTCCCGCCGTCCTTCTCAACATCCTCCATG
GTGGGTGATGTGAATCTCTTCTTTAATGATCAAGACAACGATTTGTCAAT
AGCAGAAATAGAGATAATGATTGCGGAGCCCAGGGCACGAGGGAAGGGGA
TGGGGAAGGAGGGGGTAGGGATGATGATGCGCTATGCAGTTGACAAGTTG
GGGGTAAAAAGATTTTATTGCAAGATTTCGGAGGACAACTTGACGAGCCT
GCGGATGTTTGAGGGGTAGGCAATCGGCTGATACTCGTTCCCTATCGAAA
GAAATATGTAGCCCGCTACCATGCCTGGATGCAAGACTCTTTTCTGCAAG
AAATGACGGCGTCGGTACCCTTGAGCTTGGAAGAAGAGTACGCTATGCAG
GCCTCCTGGCGTGACGACGAGAAGAATGAAAGGCAATTGGGAGACGGCCC
TG
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Synonyms
Publications