jgi.p|Nanoce1779_2|599557, mRNA_7658 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599557
Unique NamemRNA_7658
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length534
Alignment locationscaffold_20:535951..536484 +

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Properties
Property NameValue
TranscriptId599643
TrackFilteredModels2
ProteinId599557
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:535951..536484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599557gene_7658Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599557mRNA_7658-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7658CDS_7658Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7658 ID=mRNA_7658|Name=jgi.p|Nanoce1779_2|599557|organism=Nannochloropsis oceanica|type=mRNA|length=534bp
GAGGAAGAGGACAAGAAAGGGAGAGAGGAAGCGCCACTCAAGTATGTTTT
GGCACTGGACACGGACGTGGCTTCGCTGCAGTCGCCGGAAAGGTTGGTTA
GTGAGTGGAAGCTGGACAGATGGGCGGAGGAAGGGAGGGAGGATGAAGAC
GAGGTTCAGGGAGGGAGAGAGGGCGCGATGGAGAAGGTACTGCGAGTGCA
TGGGATGGAGGGAGGTAGCAAGAGGAAGAATGAGGGAGACGTGCTGGCTG
AAGCGTATCAGGTATTGGTTGGCAAGCCGGGCAGCACGGAGGACGTGGGT
CGGAAGGAAAAAGACGTCCTCAAGGCGGGAAAGGAGAAGAGAGAAGGCAA
GGAGGGCGAGAAGGAGGACGAGGCGCTTTTTGAGGCCCATCAGGTCGTTA
GTGGGGCGACGATGCTTTGGTCTTTGCCAGGGCTGGAGAAGTTCGCGGAC
TTTTTAGAGGAGATGTACAGGACGAGGGAGGGAAGGGCGAGAGTGAGGGA
ATGGGGGTTTGTATTCCCGGATTGTCGACCATAA
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protein sequence of jgi.p|Nanoce1779_2|599557

>mRNA_7658-protein ID=mRNA_7658-protein|Name=jgi.p|Nanoce1779_2|599557|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
EEEDKKGREEAPLKYVLALDTDVASLQSPERLVSEWKLDRWAEEGREDED
EVQGGREGAMEKVLRVHGMEGGSKRKNEGDVLAEAYQVLVGKPGSTEDVG
RKEKDVLKAGKEKREGKEGEKEDEALFEAHQVVSGATMLWSLPGLEKFAD
FLEEMYRTREGRARVREWGFVFPDCRP*
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mRNA from alignment at scaffold_20:535951..536484+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7658 ID=mRNA_7658|Name=jgi.p|Nanoce1779_2|599557|organism=Nannochloropsis oceanica|type=mRNA|length=534bp|location=Sequence derived from alignment at scaffold_20:535951..536484+ (Nannochloropsis oceanica)
GAGGAAGAGGACAAGAAAGGGAGAGAGGAAGCGCCACTCAAGTATGTTTT
GGCACTGGACACGGACGTGGCTTCGCTGCAGTCGCCGGAAAGGTTGGTTA
GTGAGTGGAAGCTGGACAGATGGGCGGAGGAAGGGAGGGAGGATGAAGAC
GAGGTTCAGGGAGGGAGAGAGGGCGCGATGGAGAAGGTACTGCGAGTGCA
TGGGATGGAGGGAGGTAGCAAGAGGAAGAATGAGGGAGACGTGCTGGCTG
AAGCGTATCAGGTATTGGTTGGCAAGCCGGGCAGCACGGAGGACGTGGGT
CGGAAGGAAAAAGACGTCCTCAAGGCGGGAAAGGAGAAGAGAGAAGGCAA
GGAGGGCGAGAAGGAGGACGAGGCGCTTTTTGAGGCCCATCAGGTCGTTA
GTGGGGCGACGATGCTTTGGTCTTTGCCAGGGCTGGAGAAGTTCGCGGAC
TTTTTAGAGGAGATGTACAGGACGAGGGAGGGAAGGGCGAGAGTGAGGGA
ATGGGGGTTTGTATTCCCGGATTGTCGACCATAA
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Coding sequence (CDS) from alignment at scaffold_20:535951..536484+

>mRNA_7658 ID=mRNA_7658|Name=jgi.p|Nanoce1779_2|599557|organism=Nannochloropsis oceanica|type=CDS|length=534bp|location=Sequence derived from alignment at scaffold_20:535951..536484+ (Nannochloropsis oceanica)
GAGGAAGAGGACAAGAAAGGGAGAGAGGAAGCGCCACTCAAGTATGTTTT
GGCACTGGACACGGACGTGGCTTCGCTGCAGTCGCCGGAAAGGTTGGTTA
GTGAGTGGAAGCTGGACAGATGGGCGGAGGAAGGGAGGGAGGATGAAGAC
GAGGTTCAGGGAGGGAGAGAGGGCGCGATGGAGAAGGTACTGCGAGTGCA
TGGGATGGAGGGAGGTAGCAAGAGGAAGAATGAGGGAGACGTGCTGGCTG
AAGCGTATCAGGTATTGGTTGGCAAGCCGGGCAGCACGGAGGACGTGGGT
CGGAAGGAAAAAGACGTCCTCAAGGCGGGAAAGGAGAAGAGAGAAGGCAA
GGAGGGCGAGAAGGAGGACGAGGCGCTTTTTGAGGCCCATCAGGTCGTTA
GTGGGGCGACGATGCTTTGGTCTTTGCCAGGGCTGGAGAAGTTCGCGGAC
TTTTTAGAGGAGATGTACAGGACGAGGGAGGGAAGGGCGAGAGTGAGGGA
ATGGGGGTTTGTATTCCCGGATTGTCGACCATAA
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Synonyms
Publications