jgi.p|Nanoce1779_2|558783, mRNA_7656 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|558783
Unique Name	mRNA_7656
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1608
Alignment location	scaffold_20:521197..522804 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	558869
Track	FilteredModels2
ProteinId	558783

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:521197..522804 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558783	gene_7656	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558783	mRNA_7656-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7656	CDS_7656	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:521197..522804+
coding sequence from alignment at scaffold_20:521197..522804+

mRNA sequence

>mRNA_7656 ID=mRNA_7656|Name=jgi.p|Nanoce1779_2|558783|organism=Nannochloropsis oceanica|type=mRNA|length=1608bp
CGACTATCGTAATAGTCAGTCGTTCGGGCCATTTTTGCAGATTAATCGTC
TAACGTGTGATGTGTGTACGTGTGTGTGTACATTGACCAACCACACATGG
CCCCTCGCGCAAAATAATTATGTTCGGCACCGACCGTTGAAACTGTCATA
ACTGATGAAATCAGTTATGCATATTGAGCAGTTCCCCCCGACGTGGGGGG
ACCCTGGCACCCATGTAGACGTACGAACTACCCGGGTGTACCCGGATGTA
TCGAGTTAGGATATATGCTACTCGGTGCCCATCCCTATGCTCAAACAAAG
TAGCTCGGCAAATGCAAAGCCAAGGTAGCAATGCATGGTGCAATCAACCT
ATATCACCATTACCGTACCAACCATCATTTTTACTGACGCACGATGCACC
AACAACCTGCCTGTCTGGTAGTGAGTTCCACTTATGACAGAATGCTTTCG
GTCTCCTCGACGACAACACAAAATATCCTCTTACAGTGCCATCCGAAACA
TCTGTGGTATGGCATTCTCACGGTCGCGAGCCCCGCAATTTGTGGTTGCT
GGCGTCGTAGTGAGTGTATGCATGCACTACATGTATAAGCACGAATCCGT
CAGTCTGCCGTATGACCGGTCGAGTCCTACCGTTGCTGCGATGCAGTATC
TCGATGCCTATGCACGTCTTATGGCCCCACATGTTTTCCCTCAGCTTTAC
CCTTCGTGTGGCCGTATTGTTTTTTCCAGAATTACCATCCAATCTGACAG
AGGCCCAAACTTTAATGAGCAAATCTCAAAACGGAGAAGATATGGTCCTC
TTTAACTTATTGTTCCATGAAGACACGGAGCCTGGTACTTTTTTTGGAAA
TTGGAGCACTTGATGGTGTTACGTTTTCCAACACATACTTTTATGAACAT
GCTCTTGGCTGGAGAGGAATATTAGTGGAAGCAAACCCTATCAATGCTGC
CAAACTCAGGGAAGCAAACAGACCACGTTCGGCGAGCTTTTCACTGGGTA
TTTGCCCTATTGATAAGAACTTACTTAACACTGGAAACCTTACCTTCTCC
AAAACTGGTGGTCCAGTTGCTACAGCCACGGATTACGCAGCATCGGGTTT
CTTAAAGACCTGGAATGACAAGCTTGGTGAAGAAAGGGTTGTTGTGCCGT
GTGTTCCTTTACAGCTCTTAATTGAAGCCACTGGTGTTTTGGACATTGAT
TTTTTCAGCTTAGATGTGGAGGGAGCAGAGAAACTCGTACTCGAAACGGT
GAACTTAAATAAGACAAACGTTCGGCTTATAATGGTTGAACAAGACGGGT
GGAACAGAGCAAAAGATCAGTGGGTACGAGATCATTTATTAGAGCACGGT
TTTAAAAAAGTTGAAGTCAGCTTTTATAACCCTCATGGAAACGAAATATT
CATAAACCCCAATTTTGGAGAGGTAAAGTCCCGCCGTCAACTCTTACCTA
TACAGTGCTGAAAAAAGATGAAGATCATCGGTTGTGAAAATCGACAACAG
TCGATAGGATTGCTATCCAGATAATAATCCTGAAGAGTAATAGAAGATGA
CGTCGAAACGCGATGCATAAATACCGTAGAAAGAAGAAAAGATTGTGTTT
CTTGGAAA

protein sequence of jgi.p|Nanoce1779_2|558783

>mRNA_7656-protein ID=mRNA_7656-protein|Name=jgi.p|Nanoce1779_2|558783|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MKTRSLVLFLEIGALDGVTFSNTYFYEHALGWRGILVEANPINAAKLREA
NRPRSASFSLGICPIDKNLLNTGNLTFSKTGGPVATATDYAASGFLKTWN
DKLGEERVVVPCVPLQLLIEATGVLDIDFFSLDVEGAEKLVLETVNLNKT
NVRLIMVEQDGWNRAKDQWVRDHLLEHGFKKVEVSFYNPHGNEIFINPNF
GEVKSRRQLLPIQC*

mRNA from alignment at scaffold_20:521197..522804+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7656 ID=mRNA_7656|Name=jgi.p|Nanoce1779_2|558783|organism=Nannochloropsis oceanica|type=mRNA|length=1608bp|location=Sequence derived from alignment at scaffold_20:521197..522804+ (Nannochloropsis oceanica)
CGACTATCGTAATAGTCAGTCGTTCGGGCCATTTTTGCAGATTAATCGTC
TAACGTGTGATGTGTGTACGTGTGTGTGTACATTGACCAACCACACATGG
CCCCTCGCGCAAAATAATTATGTTCGGCACCGACCGTTGAAACTGTCATA
ACTGATGAAATCAGTTATGCATATTGAGCAGTTCCCCCCGACGTGGGGGG
ACCCTGGCACCCATGTAGACGTACGAACTACCCGGGTGTACCCGGATGTA
TCGAGTTAGGATATATGCTACTCGGTGCCCATCCCTATGCTCAAACAAAG
TAGCTCGGCAAATGCAAAGCCAAGGTAGCAATGCATGGTGCAATCAACCT
ATATCACCATTACCGTACCAACCATCATTTTTACTGACGCACGATGCACC
AACAACCTGCCTGTCTGGTAGTGAGTTCCACTTATGACAGAATGCTTTCG
GTCTCCTCGACGACAACACAAAATATCCTCTTACAGTGCCATCCGAAACA
TCTGTGGTATGGCATTCTCACGGTCGCGAGCCCCGCAATTTGTGGTTGCT
GGCGTCGTAGTGAGTGTATGCATGCACTACATGTATAAGCACGAATCCGT
CAGTCTGCCGTATGACCGGTCGAGTCCTACCGTTGCTGCGATGCAGTATC
TCGATGCCTATGCACGTCTTATGGCCCCACATGTTTTCCCTCAGCTTTAC
CCTTCGTGTGGCCGTATTGTTTTTTCCAGAATTACCATCCAATCTGACAG
AGGCCCAAACTTTAATGAGCAAATCTCAAAACGGAGAAGATATGGTCCTC
TTTAACTTATTGTTCCATGAAGACACGGAGCCTGGTACTTTTTTTGGAAA
TTGGAGCACTTGATGGTGTTACGTTTTCCAACACATACTTTTATGAACAT
GCTCTTGGCTGGAGAGGAATATTAGTGGAAGCAAACCCTATCAATGCTGC
CAAACTCAGGGAAGCAAACAGACCACGTTCGGCGAGCTTTTCACTGGGTA
TTTGCCCTATTGATAAGAACTTACTTAACACTGGAAACCTTACCTTCTCC
AAAACTGGTGGTCCAGTTGCTACAGCCACGGATTACGCAGCATCGGGTTT
CTTAAAGACCTGGAATGACAAGCTTGGTGAAGAAAGGGTTGTTGTGCCGT
GTGTTCCTTTACAGCTCTTAATTGAAGCCACTGGTGTTTTGGACATTGAT
TTTTTCAGCTTAGATGTGGAGGGAGCAGAGAAACTCGTACTCGAAACGGT
GAACTTAAATAAGACAAACGTTCGGCTTATAATGGTTGAACAAGACGGGT
GGAACAGAGCAAAAGATCAGTGGGTACGAGATCATTTATTAGAGCACGGT
TTTAAAAAAGTTGAAGTCAGCTTTTATAACCCTCATGGAAACGAAATATT
CATAAACCCCAATTTTGGAGAGGTAAAGTCCCGCCGTCAACTCTTACCTA
TACAGTGCTGAAAAAAGATGAAGATCATCGGTTGTGAAAATCGACAACAG
TCGATAGGATTGCTATCCAGATAATAATCCTGAAGAGTAATAGAAGATGA
CGTCGAAACGCGATGCATAAATACCGTAGAAAGAAGAAAAGATTGTGTTT
CTTGGAAA

Coding sequence (CDS) from alignment at scaffold_20:521197..522804+

>mRNA_7656 ID=mRNA_7656|Name=jgi.p|Nanoce1779_2|558783|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_20:521197..522804+ (Nannochloropsis oceanica)
ATGAAGACACGGAGCCTGGTACTTTTTTTGGAAATTGGAGCACTTGATGG
TGTTACGTTTTCCAACACATACTTTTATGAACATGCTCTTGGCTGGAGAG
GAATATTAGTGGAAGCAAACCCTATCAATGCTGCCAAACTCAGGGAAGCA
AACAGACCACGTTCGGCGAGCTTTTCACTGGGTATTTGCCCTATTGATAA
GAACTTACTTAACACTGGAAACCTTACCTTCTCCAAAACTGGTGGTCCAG
TTGCTACAGCCACGGATTACGCAGCATCGGGTTTCTTAAAGACCTGGAAT
GACAAGCTTGGTGAAGAAAGGGTTGTTGTGCCGTGTGTTCCTTTACAGCT
CTTAATTGAAGCCACTGGTGTTTTGGACATTGATTTTTTCAGCTTAGATG
TGGAGGGAGCAGAGAAACTCGTACTCGAAACGGTGAACTTAAATAAGACA
AACGTTCGGCTTATAATGGTTGAACAAGACGGGTGGAACAGAGCAAAAGA
TCAGTGGGTACGAGATCATTTATTAGAGCACGGTTTTAAAAAAGTTGAAG
TCAGCTTTTATAACCCTCATGGAAACGAAATATTCATAAACCCCAATTTT
GGAGAGGTAAAGTCCCGCCGTCAACTCTTACCTATACAGTGCTGA

Synonyms

Publications