jgi.p|Nanoce1779_2|632399, mRNA_7653 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|632399
Unique Name	mRNA_7653
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	680
Alignment location	scaffold_20:510675..513716 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	632485
Track	FilteredModels2
ProteinId	632399

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:510675..513716 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632399	gene_7653	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632399	mRNA_7653-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7653	CDS_7653	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:510675..513716+
coding sequence from alignment at scaffold_20:510675..513716+

mRNA sequence

>mRNA_7653 ID=mRNA_7653|Name=jgi.p|Nanoce1779_2|632399|organism=Nannochloropsis oceanica|type=mRNA|length=680bp
CAGGGTGTCAGAGGGAAGGAGTGTGGTTGCTCCATGCGGTGCTGCAAGCA
AAGGGTGAAGGGAAGACGGGAGCATGATGGCACGTATCTCCAATGTCTTT
ACGATGATGTAACGGAACATGACTTCATTAGCTGGTCCTCCAGCTCGAGC
TGCTGATGCTGCGACTGGCGGTGGTGCTGCTGTCGGTGCCACTGCTGCTA
CTACGGCTGTGTGCAAGGCCAATGCCGTGGTTGTGGCACACGACTACAGG
CACCAAGACCTCAATGATGTGGGGCCAAAAAGCCAAAAGCTGGCTGCAGG
AGAAAACGCAGGAAATCGCGAGCAAGACACAAGAGGTGCGGCAGACCCGC
TTGATGTCAGACATTGAAGCGCATGGAAAGAACATCATCCATAACTTGGT
TCTTGAGTTCAAATTTCCCGGCTACCCCCTCCCCGCCCTTGGGCTGATGG
TCAAGCTTTGTCTCTCTATTGAGAACTGGCTGCAGGCGGACGATCAGAAC
GTGGCCATCGTGCATTGTCTCACTGGGAAAGGCCGTACGGATGCTGTCGA
GGGCGGGAAAGAGGGAGGGGGGGAGGAGGAGGAGGAGGCGGAAGAGCTCT
TGGGTTGCTGTCCGTACTTGCAGTTGTTCAAAAGTGGGAAACTCATCTAC
AACCGCGCCCTGCTCCCGCGACGGCAGTAA

protein sequence of jgi.p|Nanoce1779_2|632399

>mRNA_7653-protein ID=mRNA_7653-protein|Name=jgi.p|Nanoce1779_2|632399|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MLRLAVVLLSVPLLLLRLCARPMPWLWHTTTGTKTSMMWGQKAKSWLQEK
TQEIASKTQEVRQTRLMSDIEAHGKNIIHNLVLEFKFPGYPLPALGLMVK
LCLSIENWLQADDQNVAIVHCLTGKGRTDAVEGGKEGGGEEEEEAEELLG
CCPYLQLFKSGKLIYNRALLPRRQ*

mRNA from alignment at scaffold_20:510675..513716+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7653 ID=mRNA_7653|Name=jgi.p|Nanoce1779_2|632399|organism=Nannochloropsis oceanica|type=mRNA|length=3042bp|location=Sequence derived from alignment at scaffold_20:510675..513716+ (Nannochloropsis oceanica)
CAGGGTGTCAGAGGGAAGGAGTGTGGTTGCTCCATGCGGTGCTGCAAGCA
AAGGGTGAAGGGAAGACGGGAGCATGATGGCACGTATCTCCAATGTCTTT
ACGATGATGTAACGGAACATGACTTCATTAGCTGGTCCTCCAGCTCGAGC
TGCTGATGCTGCGACTGGCGGTGGTGCTGCTGTCGGTGCCACTGCTGCTA
CTACGGCTGTGTGCAAGGCCAATGCCGTGGTTGTGGTATGCGTGTAGTGG
CAGAGGCGTGTGTGCGTGACGAAGGGGTCAATGGAGGGGGGGGAGGGGGA
AAGCGATTTTACCTGTCCTCGTTCCCCCGTTCTACATGCCCACCTCCCTC
CTCCCATATCACCACATCAGGCACACGACTACAGGCACCAAGACCTCAAT
GATGTGGGGCCAAAAAGCCAAAAGCTGGCTGCAGGAGAAAACGCAGGAAA
TCGCGAGCAAGACACAAGAGGTGGGGTCCGAGGGAGGGAAGAGGGGGAGG
ATGATGTTTAGACTACAAGATCGTACCTTGACATGCATTTACACGCACAA
TCAAAGTGATCCTGCTCCTCGTTCCAATTTCGAGCGGCATTGGAATCATG
GGTCATGTTTAGCATGGTGCATATCCTCTATAGACTCACTCACCCCCCAT
ATAACCTGCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCCTCCATGTC
CTTGTTTTTCCCGCTTTAGGTGCGGCAGACCCGCTTGATGTCAGACATTG
AAGCGCATGGAAAGAACATCATCCATAACTTGGTAAGTATGAAAAAAAGA
GGGAGGGAGGGAGGGAGGGATGGCTGGAGGGGAGAAAGAGAGGCCTATTC
AGAGAGGACGCATCTAGTCATTCACTCCTTCTTCCCTCATTCCGACATCT
CCTCCCTTATTGCTCCCACATCCCCCCCCATCTTCCTCTTTTTCTTGCGA
TGCTATGCTAGGTGGCGGCGGGGACGAAGATCAACGAGCAAGAGATTCTG
TACAATGTCCGCTTCACGGTAGGGAGGGAGGGACGGACGGACGGACGGAC
GGAGGGACGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGG
AAGGAGGGAAAAAAAGTGGATGGCATGTCGAATGGTAAGGGGAGTATGAT
AAACTCCTCTCCTCCATATTTGCCATCTCTTTCTTCGACACCTCCATTGC
TATCATCTCAAACCTCAACTCATCCTCCTTTCCTCCCTCCCTTCGTCCTT
TCCTCCCTCCCTCCCTCAGCCCATCACGCCCCGAGTCATCGGCATGGCCT
TCCCACTCCTCCTGACTCGCTCGCTCGCCTCCTATCTTTTAAATATGGGC
CCCGTTACATGCTCTGGAACCTTTCGGAGGAGGCCTACGACTACTCCTTG
TTCGATGACCAGGGTAGACAGGTCAGCATCCTCCTCCCTCCCTCCCTCCT
TCCTTCCTCCCTTCCTCCCCCTCCCTCCCTTCCCTCCCTCCCTCCTCCCT
CCCTCCTCCCTCCCTCCCTCCCCTCCCTTCCTCCCTCCCTCCCTCCCTCC
TTCTTCCCTCTTTGCCTTCACGAATAGCCCACAACTGCTTGCTGGGATGA
CTCCTTGTTTGACAATCAGATAGATTAGATAGGTCTTCCCTCCCTCCCGC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCAGGTTCTTGAGTTCAAAT
TTCCCGGCTACCCCCTCCCCGCCCTTGGGCTGATGGTCAAGCTTTGTCTC
TCTATTGAGAACTGGCTGCAGGTACGCCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCTTTCCTTCCTCTTTGTCCACTTCTCGGCTACTCCTATAGGCGTT
CCCACCTCTCCCTCCCTCCCTCCCTCCTTCCCTCCAGGCGGACGATCAGA
ACGTGGCCATCGTGCATTGTCTCACTGGGAAAGGCCGTACGGTGAGGGAG
GGAGGGAGGGAGGGAGGGAGAGAGGGAAGGAGGGAGGGAGGGAGGGAAGG
AGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGCGAGGGAGGGAGCGAG
CATTGCTGAGAAACAAATGTAGAGCGTATGTCTCACCCTCCCTCCCCTCC
CTCCCTCACTCCCTCCCTCCCTCCTCCTATCCCTCCAGGCCACGGTGCTG
GCCGCAGTTTCTCTGTTGGTTAGGCATCGATGTGGGGCAGCAACCTCCGG
GTAGCTCGGCAAGCACCATGCAGGTAGGAGGGAGGAAGGGAAGAAAAAAT
GGTGGCAGTGGTAGGATGCCGACTTCACTCGGTTATCTCAGCCCTTCCTC
CCTCTCTCTTTCCCTACCTTCCTCCCTTCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCAGGCCCTCCACTTCGTGGCCGAGAGGATGGGC
ATGGCGGTCCACAAGGCCACCATTCCCTCCCAGCGACGGTACCTCCAGGT
AGGGAAGGAGGGAGGGAGGGAGGGAGGAACGGATGGTGGGGCCGGAGGGA
GGGAGGGAGGGACGGGGCGAGGGATGATTGACAGCTCCATATCTTCTAGT
TCTCGTCATTCCTACGAACGAATCTGACCAGCCCCTCTCCCTTCCTCTTC
CTCCCTCCCTCCCTCCCTCCTTGCAGTATTTCCACCACATGACGGAAGGT
ATCAAGCCTCGTCCTCAAGCCCTCCTCCTCAACCCGAGTCATCATGAACA
CCATCCCCCTCTTCGGGTCCCTCCCTCCCTCCCTCCCGAAGGATGCTGTC
GAGGGCGGGAAAGAGGGAGGGGGGGAGGAGGAGGAGGAGGCGGAAGAGCT
CTTGGGTTGCTGTCCGTACTTGCAGTTGTTCAAAAGTGAGGGGGAGGGAA
GAAGGGAGGGAGGGAGGGAGGGAGGGAGGCAGAAAGGGGGGGAGGGAGGG
AAGGAGGGATCTGGAATTAGTCGAAAAGTGTGAGCCCCGAATGACTGCAT
CCCCTCACCACCCTCCCCCTCCTCCCTCCCTCCCTTATCCCTCAGGTGGG
AAACTCATCTACAACCGCGCCCTGCTCCCGCGACGGCAGTAA

Coding sequence (CDS) from alignment at scaffold_20:510675..513716+

>mRNA_7653 ID=mRNA_7653|Name=jgi.p|Nanoce1779_2|632399|organism=Nannochloropsis oceanica|type=CDS|length=3675bp|location=Sequence derived from alignment at scaffold_20:510675..513716+ (Nannochloropsis oceanica)
ATGCTGCGACTGGCGGTGGTGCTGCTGTCGGTGCCACTGCTGCTACTACG
GCTGTGTGCAAGGCCAATGCCGTGGTTGTGGCACACGACTACAGGCACCA
AGACCTCAATGATGTGGGGCCAAAAAGCCAAAAGCTGGCTGCAGGAGAAA
ACGCAGGAAATCGCGAGCAAGACACAAGAGGTGCGGCAGACCCGCTTGAT
GTCAGACATTGAAGCGCATGGAAAGAACATCATCCATAACTTGGTTCTTG
AGTTCAAATTTCCCGGCTACCCCCTCCCCGCCCTTGGGCTGATGGTCAAG
CTTTGTCTCTCTATTGAGAACTGGCTGCAGGCGGACGATCAGAACGTGGC
CATCGTGCATTGTCTCACTGGGAAAGGCCGTACGGATGCTGTCGAGGGCG
GGAAAGAGGGAGGGGGGGAGGAGGAGGAGGAGGCGGAAGAGCTCTTGGGT
TGCTGTCCGTACTTGCAGTTGTTCAAAAGTGGGAAACTCATCTACAACCG
CGCCCTGCTCCCGCGACGGCAGTAAATGCTGCGACTGGCGGTGGTGCTGC
TGTCGGTGCCACTGCTGCTACTACGGCTGTGTGCAAGGCCAATGCCGTGG
TTGTGGCACACGACTACAGGCACCAAGACCTCAATGATGTGGGGCCAAAA
AGCCAAAAGCTGGCTGCAGGAGAAAACGCAGGAAATCGCGAGCAAGACAC
AAGAGGTGCGGCAGACCCGCTTGATGTCAGACATTGAAGCGCATGGAAAG
AACATCATCCATAACTTGGTTCTTGAGTTCAAATTTCCCGGCTACCCCCT
CCCCGCCCTTGGGCTGATGGTCAAGCTTTGTCTCTCTATTGAGAACTGGC
TGCAGGCGGACGATCAGAACGTGGCCATCGTGCATTGTCTCACTGGGAAA
GGCCGTACGGATGCTGTCGAGGGCGGGAAAGAGGGAGGGGGGGAGGAGGA
GGAGGAGGCGGAAGAGCTCTTGGGTTGCTGTCCGTACTTGCAGTTGTTCA
AAAGTGGGAAACTCATCTACAACCGCGCCCTGCTCCCGCGACGGCAGTAA
ATGCTGCGACTGGCGGTGGTGCTGCTGTCGGTGCCACTGCTGCTACTACG
GCTGTGTGCAAGGCCAATGCCGTGGTTGTGGCACACGACTACAGGCACCA
AGACCTCAATGATGTGGGGCCAAAAAGCCAAAAGCTGGCTGCAGGAGAAA
ACGCAGGAAATCGCGAGCAAGACACAAGAGGTGCGGCAGACCCGCTTGAT
GTCAGACATTGAAGCGCATGGAAAGAACATCATCCATAACTTGGTTCTTG
AGTTCAAATTTCCCGGCTACCCCCTCCCCGCCCTTGGGCTGATGGTCAAG
CTTTGTCTCTCTATTGAGAACTGGCTGCAGGCGGACGATCAGAACGTGGC
CATCGTGCATTGTCTCACTGGGAAAGGCCGTACGGATGCTGTCGAGGGCG
GGAAAGAGGGAGGGGGGGAGGAGGAGGAGGAGGCGGAAGAGCTCTTGGGT
TGCTGTCCGTACTTGCAGTTGTTCAAAAGTGGGAAACTCATCTACAACCG
CGCCCTGCTCCCGCGACGGCAGTAAATGCTGCGACTGGCGGTGGTGCTGC
TGTCGGTGCCACTGCTGCTACTACGGCTGTGTGCAAGGCCAATGCCGTGG
TTGTGGCACACGACTACAGGCACCAAGACCTCAATGATGTGGGGCCAAAA
AGCCAAAAGCTGGCTGCAGGAGAAAACGCAGGAAATCGCGAGCAAGACAC
AAGAGGTGCGGCAGACCCGCTTGATGTCAGACATTGAAGCGCATGGAAAG
AACATCATCCATAACTTGGTTCTTGAGTTCAAATTTCCCGGCTACCCCCT
CCCCGCCCTTGGGCTGATGGTCAAGCTTTGTCTCTCTATTGAGAACTGGC
TGCAGGCGGACGATCAGAACGTGGCCATCGTGCATTGTCTCACTGGGAAA
GGCCGTACGGATGCTGTCGAGGGCGGGAAAGAGGGAGGGGGGGAGGAGGA
GGAGGAGGCGGAAGAGCTCTTGGGTTGCTGTCCGTACTTGCAGTTGTTCA
AAAGTGGGAAACTCATCTACAACCGCGCCCTGCTCCCGCGACGGCAGTAA
ATGCTGCGACTGGCGGTGGTGCTGCTGTCGGTGCCACTGCTGCTACTACG
GCTGTGTGCAAGGCCAATGCCGTGGTTGTGGCACACGACTACAGGCACCA
AGACCTCAATGATGTGGGGCCAAAAAGCCAAAAGCTGGCTGCAGGAGAAA
ACGCAGGAAATCGCGAGCAAGACACAAGAGGTGCGGCAGACCCGCTTGAT
GTCAGACATTGAAGCGCATGGAAAGAACATCATCCATAACTTGGTTCTTG
AGTTCAAATTTCCCGGCTACCCCCTCCCCGCCCTTGGGCTGATGGTCAAG
CTTTGTCTCTCTATTGAGAACTGGCTGCAGGCGGACGATCAGAACGTGGC
CATCGTGCATTGTCTCACTGGGAAAGGCCGTACGGATGCTGTCGAGGGCG
GGAAAGAGGGAGGGGGGGAGGAGGAGGAGGAGGCGGAAGAGCTCTTGGGT
TGCTGTCCGTACTTGCAGTTGTTCAAAAGTGGGAAACTCATCTACAACCG
CGCCCTGCTCCCGCGACGGCAGTAAATGCTGCGACTGGCGGTGGTGCTGC
TGTCGGTGCCACTGCTGCTACTACGGCTGTGTGCAAGGCCAATGCCGTGG
TTGTGGCACACGACTACAGGCACCAAGACCTCAATGATGTGGGGCCAAAA
AGCCAAAAGCTGGCTGCAGGAGAAAACGCAGGAAATCGCGAGCAAGACAC
AAGAGGTGCGGCAGACCCGCTTGATGTCAGACATTGAAGCGCATGGAAAG
AACATCATCCATAACTTGGTTCTTGAGTTCAAATTTCCCGGCTACCCCCT
CCCCGCCCTTGGGCTGATGGTCAAGCTTTGTCTCTCTATTGAGAACTGGC
TGCAGGCGGACGATCAGAACGTGGCCATCGTGCATTGTCTCACTGGGAAA
GGCCGTACGGATGCTGTCGAGGGCGGGAAAGAGGGAGGGGGGGAGGAGGA
GGAGGAGGCGGAAGAGCTCTTGGGTTGCTGTCCGTACTTGCAGTTGTTCA
AAAGTGGGAAACTCATCTACAACCGCGCCCTGCTCCCGCGACGGCAGTAA
ATGCTGCGACTGGCGGTGGTGCTGCTGTCGGTGCCACTGCTGCTACTACG
GCTGTGTGCAAGGCCAATGCCGTGGTTGTGGCACACGACTACAGGCACCA
AGACCTCAATGATGTGGGGCCAAAAAGCCAAAAGCTGGCTGCAGGAGAAA
ACGCAGGAAATCGCGAGCAAGACACAAGAGGTGCGGCAGACCCGCTTGAT
GTCAGACATTGAAGCGCATGGAAAGAACATCATCCATAACTTGGTTCTTG
AGTTCAAATTTCCCGGCTACCCCCTCCCCGCCCTTGGGCTGATGGTCAAG
CTTTGTCTCTCTATTGAGAACTGGCTGCAGGCGGACGATCAGAACGTGGC
CATCGTGCATTGTCTCACTGGGAAAGGCCGTACGGATGCTGTCGAGGGCG
GGAAAGAGGGAGGGGGGGAGGAGGAGGAGGAGGCGGAAGAGCTCTTGGGT
TGCTGTCCGTACTTGCAGTTGTTCAAAAGTGGGAAACTCATCTACAACCG
CGCCCTGCTCCCGCGACGGCAGTAA

Synonyms

Publications