jgi.p|Nanoce1779_2|574059, mRNA_765 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574059
Unique NamemRNA_765
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length807
Alignment locationscaffold_2:385235..386041 +

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Properties
Property NameValue
TranscriptId574145
TrackFilteredModels2
ProteinId574059
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:385235..386041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574059gene_765Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574059mRNA_765-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_765CDS_765Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_765 ID=mRNA_765|Name=jgi.p|Nanoce1779_2|574059|organism=Nannochloropsis oceanica|type=mRNA|length=807bp
AGGCAGCATGAGCGTCAAGAGAAGGGAAAGACCTTCACGACCATATATAC
CTAGTACCTACGCCGTCATGGTCCTATCTCTCCTTTTGCTGTCGACCTCC
TCTCCCTTCGTAATTCCGGCCTCTCGTCCACGTTCCCACGACATTTCAGC
ATGCTGCCATTCCCAGGCAACCTCCATGAACTCCACGACGACAATGACTG
CAAGCCTTGATGACGCCGATGAACGCTTCATGAGGCTGGCGCTGGTCGAG
GCGCAAGCAGCCTTCGCTGCCCGTGAGATCCCGGTAGGCGCTGTCCTCGT
TTCGAGCGAGGGTCAGGTCTTGGCAACGGGGCGCAATCGTGTCGAGGCCA
CCGGAGACGCAAGTGCGCATGCAGAGCTTGAATGCTTGCGGGCAGCCTCC
CATTGCACAGACCGTCTGGCGAACGGCCACTGGCGCATGCTGGATAGCAC
GCTTTACGTGACCTTGGAACCGTGCCTCATGTGCTTGGGTGCCGTGCAGA
GCTTTCGGGTGAAACGCATCGTGTATGGAGCACCAAATATAATGCTGGGG
GCTATTGAGAGTTATATCAAGGTATTGGAGCAAGCACCACATCCTTTTCA
TGCTTGTCTGGAGGTACGTGGGGGCGTACAGAGAGACGAATGCGGTGCAT
TGATGAAGCGCTTTTTTGCGGAGCGCCGGCTTCAGAGCAAGATACTGGTT
GAGAAAGAACGAGAGAGAGACAAAATTGTATGATGAGCACATACTCAAAA
GAAGTATTATGTACGGTTCTTTGATTCTTTTTAAAGTAAAATAATACTTG
TGAAAAT
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protein sequence of jgi.p|Nanoce1779_2|574059

>mRNA_765-protein ID=mRNA_765-protein|Name=jgi.p|Nanoce1779_2|574059|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MSVKRRERPSRPYIPSTYAVMVLSLLLLSTSSPFVIPASRPRSHDISACC
HSQATSMNSTTTMTASLDDADERFMRLALVEAQAAFAAREIPVGAVLVSS
EGQVLATGRNRVEATGDASAHAELECLRAASHCTDRLANGHWRMLDSTLY
VTLEPCLMCLGAVQSFRVKRIVYGAPNIMLGAIESYIKVLEQAPHPFHAC
LEVRGGVQRDECGALMKRFFAERRLQSKILVEKERERDKIV*
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mRNA from alignment at scaffold_2:385235..386041+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_765 ID=mRNA_765|Name=jgi.p|Nanoce1779_2|574059|organism=Nannochloropsis oceanica|type=mRNA|length=807bp|location=Sequence derived from alignment at scaffold_2:385235..386041+ (Nannochloropsis oceanica)
AGGCAGCATGAGCGTCAAGAGAAGGGAAAGACCTTCACGACCATATATAC
CTAGTACCTACGCCGTCATGGTCCTATCTCTCCTTTTGCTGTCGACCTCC
TCTCCCTTCGTAATTCCGGCCTCTCGTCCACGTTCCCACGACATTTCAGC
ATGCTGCCATTCCCAGGCAACCTCCATGAACTCCACGACGACAATGACTG
CAAGCCTTGATGACGCCGATGAACGCTTCATGAGGCTGGCGCTGGTCGAG
GCGCAAGCAGCCTTCGCTGCCCGTGAGATCCCGGTAGGCGCTGTCCTCGT
TTCGAGCGAGGGTCAGGTCTTGGCAACGGGGCGCAATCGTGTCGAGGCCA
CCGGAGACGCAAGTGCGCATGCAGAGCTTGAATGCTTGCGGGCAGCCTCC
CATTGCACAGACCGTCTGGCGAACGGCCACTGGCGCATGCTGGATAGCAC
GCTTTACGTGACCTTGGAACCGTGCCTCATGTGCTTGGGTGCCGTGCAGA
GCTTTCGGGTGAAACGCATCGTGTATGGAGCACCAAATATAATGCTGGGG
GCTATTGAGAGTTATATCAAGGTATTGGAGCAAGCACCACATCCTTTTCA
TGCTTGTCTGGAGGTACGTGGGGGCGTACAGAGAGACGAATGCGGTGCAT
TGATGAAGCGCTTTTTTGCGGAGCGCCGGCTTCAGAGCAAGATACTGGTT
GAGAAAGAACGAGAGAGAGACAAAATTGTATGATGAGCACATACTCAAAA
GAAGTATTATGTACGGTTCTTTGATTCTTTTTAAAGTAAAATAATACTTG
TGAAAAT
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Coding sequence (CDS) from alignment at scaffold_2:385235..386041+

>mRNA_765 ID=mRNA_765|Name=jgi.p|Nanoce1779_2|574059|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_2:385235..386041+ (Nannochloropsis oceanica)
ATGAGCGTCAAGAGAAGGGAAAGACCTTCACGACCATATATACCTAGTAC
CTACGCCGTCATGGTCCTATCTCTCCTTTTGCTGTCGACCTCCTCTCCCT
TCGTAATTCCGGCCTCTCGTCCACGTTCCCACGACATTTCAGCATGCTGC
CATTCCCAGGCAACCTCCATGAACTCCACGACGACAATGACTGCAAGCCT
TGATGACGCCGATGAACGCTTCATGAGGCTGGCGCTGGTCGAGGCGCAAG
CAGCCTTCGCTGCCCGTGAGATCCCGGTAGGCGCTGTCCTCGTTTCGAGC
GAGGGTCAGGTCTTGGCAACGGGGCGCAATCGTGTCGAGGCCACCGGAGA
CGCAAGTGCGCATGCAGAGCTTGAATGCTTGCGGGCAGCCTCCCATTGCA
CAGACCGTCTGGCGAACGGCCACTGGCGCATGCTGGATAGCACGCTTTAC
GTGACCTTGGAACCGTGCCTCATGTGCTTGGGTGCCGTGCAGAGCTTTCG
GGTGAAACGCATCGTGTATGGAGCACCAAATATAATGCTGGGGGCTATTG
AGAGTTATATCAAGGTATTGGAGCAAGCACCACATCCTTTTCATGCTTGT
CTGGAGGTACGTGGGGGCGTACAGAGAGACGAATGCGGTGCATTGATGAA
GCGCTTTTTTGCGGAGCGCCGGCTTCAGAGCAAGATACTGGTTGAGAAAG
AACGAGAGAGAGACAAAATTGTATGA
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Synonyms
Publications