jgi.p|Nanoce1779_2|599514, mRNA_7649 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599514
Unique NamemRNA_7649
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1009
Alignment locationscaffold_20:500318..501326 -

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Properties
Property NameValue
TranscriptId599600
TrackFilteredModels2
ProteinId599514
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:500318..501326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599514gene_7649Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599514mRNA_7649-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7649CDS_7649Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7649 ID=mRNA_7649|Name=jgi.p|Nanoce1779_2|599514|organism=Nannochloropsis oceanica|type=mRNA|length=1009bp
AAGGGGATGTGAGGGAGAGAGGAGTCAGTTGGTGACGCTGGTCGCCGCTG
GAGCTGCCACTGCTGTCCCTGCCATTGCTGCCACCCTTGCCGGCGTGCGT
GCCTGCCTGAAGTCGGAGAGACAGCATAGGGTAATTGCAGCCACATATGG
ACTGCTGGGAGCACAGTAATAATGATGAGGGGATGATGACGTCGTCAGTC
GGCTGCTTACAAACTATGTATCCCACCACGCCCCAGGCCCTTCATTGGCC
CTTCCCTCTTCATGCCAGCCTCAGTTGCCAGAGGAGGAGCGCAAGTATGT
AAGCCTTGCGTCTGTTCAGGGGTTTTTATCAGGGACACGTCAACCCTCAT
TTTTGTGGAATATTGGATAACGCGTCCGCCTATGACCACATCGGCTTTCC
AAAGAGATGCCGGTTTCGGCAAAGAGATACCTATTTAATGGTGCCGTCGG
GCACGTGAGGATAGAATAATGCCACTTTGACGGGTGAGATGTCCTTGGGC
ATTTGGACAATTCATCTGGCTTTCCTAACTTTGCTCGCTTTGTCTGCCTC
CCTCGCTGACGTTCTTTGCCCATTTGGGCTTACGTTTACCCCTTCACTCC
GTCACTTCGATGCAGTCGTGCGCCCCAAAGCACCCGGGTCGCACAGAAAA
ACGGAGGTCTCGGTCGCAAGTTTGAGTTATCCTCTCCTACTGTGCGTCAT
TTACAGATGCTTCGGCGGATAACTTGTGCAGCTAGGGGGATCTGCCTTTG
TGGCGTGTTGGCAGGGATATGTCCCCAGGATGGGGGTCGCCATCCCTCCG
AGATTTTTACGTATAAATGTCATATAGTGCACGATTAGAGGCAGCCGTTC
CATTCCTCCCTTTATACAGATAGGGTGGTGGGGCTATCTTGAGCACCCAT
CAATTGCTTAGTAAACAAGTTTAAACCAAACAAAGGGTGGTTGGTTTCCA
AGCCGAAGCCCGACGATGTAAAAGTATAGGAAGGAAAACAACCATGCGGG
TTGATAACA
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protein sequence of jgi.p|Nanoce1779_2|599514

>mRNA_7649-protein ID=mRNA_7649-protein|Name=jgi.p|Nanoce1779_2|599514|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MSLGIWTIHLAFLTLLALSASLADVLCPFGLTFTPSLRHFDAVVRPKAPG
SHRKTEVSVASLSYPLLLCVIYRCFGG*
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mRNA from alignment at scaffold_20:500318..501326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7649 ID=mRNA_7649|Name=jgi.p|Nanoce1779_2|599514|organism=Nannochloropsis oceanica|type=mRNA|length=1009bp|location=Sequence derived from alignment at scaffold_20:500318..501326- (Nannochloropsis oceanica)
AAGGGGATGTGAGGGAGAGAGGAGTCAGTTGGTGACGCTGGTCGCCGCTG
GAGCTGCCACTGCTGTCCCTGCCATTGCTGCCACCCTTGCCGGCGTGCGT
GCCTGCCTGAAGTCGGAGAGACAGCATAGGGTAATTGCAGCCACATATGG
ACTGCTGGGAGCACAGTAATAATGATGAGGGGATGATGACGTCGTCAGTC
GGCTGCTTACAAACTATGTATCCCACCACGCCCCAGGCCCTTCATTGGCC
CTTCCCTCTTCATGCCAGCCTCAGTTGCCAGAGGAGGAGCGCAAGTATGT
AAGCCTTGCGTCTGTTCAGGGGTTTTTATCAGGGACACGTCAACCCTCAT
TTTTGTGGAATATTGGATAACGCGTCCGCCTATGACCACATCGGCTTTCC
AAAGAGATGCCGGTTTCGGCAAAGAGATACCTATTTAATGGTGCCGTCGG
GCACGTGAGGATAGAATAATGCCACTTTGACGGGTGAGATGTCCTTGGGC
ATTTGGACAATTCATCTGGCTTTCCTAACTTTGCTCGCTTTGTCTGCCTC
CCTCGCTGACGTTCTTTGCCCATTTGGGCTTACGTTTACCCCTTCACTCC
GTCACTTCGATGCAGTCGTGCGCCCCAAAGCACCCGGGTCGCACAGAAAA
ACGGAGGTCTCGGTCGCAAGTTTGAGTTATCCTCTCCTACTGTGCGTCAT
TTACAGATGCTTCGGCGGATAACTTGTGCAGCTAGGGGGATCTGCCTTTG
TGGCGTGTTGGCAGGGATATGTCCCCAGGATGGGGGTCGCCATCCCTCCG
AGATTTTTACGTATAAATGTCATATAGTGCACGATTAGAGGCAGCCGTTC
CATTCCTCCCTTTATACAGATAGGGTGGTGGGGCTATCTTGAGCACCCAT
CAATTGCTTAGTAAACAAGTTTAAACCAAACAAAGGGTGGTTGGTTTCCA
AGCCGAAGCCCGACGATGTAAAAGTATAGGAAGGAAAACAACCATGCGGG
TTGATAACA
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Coding sequence (CDS) from alignment at scaffold_20:500318..501326-

>mRNA_7649 ID=mRNA_7649|Name=jgi.p|Nanoce1779_2|599514|organism=Nannochloropsis oceanica|type=CDS|length=234bp|location=Sequence derived from alignment at scaffold_20:500318..501326- (Nannochloropsis oceanica)
ATGTCCTTGGGCATTTGGACAATTCATCTGGCTTTCCTAACTTTGCTCGC
TTTGTCTGCCTCCCTCGCTGACGTTCTTTGCCCATTTGGGCTTACGTTTA
CCCCTTCACTCCGTCACTTCGATGCAGTCGTGCGCCCCAAAGCACCCGGG
TCGCACAGAAAAACGGAGGTCTCGGTCGCAAGTTTGAGTTATCCTCTCCT
ACTGTGCGTCATTTACAGATGCTTCGGCGGATAA
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Synonyms
Publications